Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0006160

Physical Location & Seq

Genomic Coordinates Forward (+)

81372209 .. 81380201

Gene Structure 7993 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G053640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGAAGGTCAGGGTGGTGTATAGGAAAGTGCGGGATTACATTCGTTATGATCTGAAAGAGATCACATTTCCATCATCACTGCCGGACCCTCCTTATATCACCTGGCATGACCGCTTCTTGCTACTACGTGATATTGATCGTGAACTGCAACCTAATGATTATAAGAAGGATGAAGAGAGTGAGAATGAACCTAGTGGAGCAAGAAGCACAACTAAAGACATGGAACCCTTAACGTTAGAGGATCTTGGAAAGATCTACATGACAAGAGCTTCTGCATATAGGGATGCTCTTAGAAGTTTTATCCATGGGTACCAAGAAGGCATTCAGCAAGTAGTGGAGAAAAAGGAAGAGGCTAAATCCGAACAGGAAAGTGATATACCAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

15.19

Weight (kDa)

5.3

Isoelectric Point (pI)

51.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06240
fragaria_vesca	FvH4_2g10910
malus_domestica	MD05G1051100.v1.1 MD07G1268900.v1.1 MD10G1058500.v1.1 MD13G1200900.v1.1
prunus_persica	Prupe.8G077900_v2.0.a1
pyrus_communis	pycom05g04320 pycom10g04520
rosa_chinensis	RchiOBHm_Chr2g0174001 RchiOBHm_Chr2g0174011 RchiOBHm_Chr6g0269071
rosa_laevigata	RLG00000013886
rosa_multiflora	Rmu_sc0004350.1_g000002 Rmu_sc0032469.1_g000007
rosa_roxburghii	Rroxscaffold_7G00199050
rosa_rugosa	Rorug05G0301400 Rorug06G0044700 Rorug06G0044700
rosa_samantha	Rh2CG628600 Rh6AG165300 Rh6BG170700 Rh6CG164200 Rh6DG155800
rosa_wichuraiana	Rw2G053640 Rw6G014220 Rw6G014260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	162
Acc65I	GGTACC	1 cut(s)	309
AccB1I	GGYRCC	1 cut(s)	309
AciI	CCGC	2 cut(s)	31, 112
AclI	AACGTT	1 cut(s)	233
AclWI	GGATC	1 cut(s)	249
AfaI	GTAC	1 cut(s)	311
AjnI	CCWGG	1 cut(s)	101
AjuI	GAANNNNNNNTTGG	2 cut(s)	306, 338
AluBI	AGCT	1 cut(s)	269
AluI	AGCT	1 cut(s)	269
AlwI	GGATC	1 cut(s)	249
Asp700I	GAANNNNTTC	1 cut(s)	321
Asp718I	GGTACC	1 cut(s)	309
AspS9I	GGNCC	1 cut(s)	85
AsuHPI	GGTGA	1 cut(s)	91
AvaII	GGWCC	1 cut(s)	85
BanI	GGYRCC	1 cut(s)	309
BccI	CCATC	1 cut(s)	79
BciT130I	CCWGG	1 cut(s)	103
BfaI	CTAG	1 cut(s)	192
BglII	AGATCT	1 cut(s)	252
Bme1390I	CCNGG	1 cut(s)	103
Bme18I	GGWCC	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	3 cut(s)	87, 225, 311
BmrFI	CCNGG	1 cut(s)	103
BmsI	GCATC	1 cut(s)	274
BsaAI	YACGTR	1 cut(s)	128
BsaBI	GATNNNNATC	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	304
Bse8I	GATNNNNATC	1 cut(s)	135
BseBI	CCWGG	1 cut(s)	103
BseDI	CCNNGG	1 cut(s)	304
BseGI	GGATG	2 cut(s)	175, 289
BseJI	GATNNNNATC	1 cut(s)	135
BshNI	GGYRCC	1 cut(s)	309
BsiSI	CCGG	1 cut(s)	83
BsmI	GAATGC	1 cut(s)	321
Bsp143I	GATC	5 cut(s)	49, 60, 136, 241, 252
Bsp19I	CCATGG	1 cut(s)	304
BspACI	CCGC	2 cut(s)	31, 112
BspLI	GGNNCC	3 cut(s)	87, 225, 311
BspPI	GGATC	1 cut(s)	249
BspT107I	GGYRCC	1 cut(s)	309
BssECI	CCNNGG	1 cut(s)	304
BssMI	GATC	5 cut(s)	49, 60, 136, 241, 252
BssT1I	CCWWGG	1 cut(s)	304
Bst2UI	CCWGG	1 cut(s)	103
Bst6I	CTCTTC	2 cut(s)	168, 342
BstBAI	YACGTR	1 cut(s)	128
BstDEI	CTNAG	1 cut(s)	290
BstDSI	CCRYGG	1 cut(s)	304
BstF5I	GGATG	2 cut(s)	175, 289
BstKTI	GATC	5 cut(s)	52, 63, 139, 244, 255
BstMBI	GATC	5 cut(s)	49, 60, 136, 241, 252
BstNI	CCWGG	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	101
BstX2I	RGATCY	2 cut(s)	241, 252
BstYI	RGATCY	2 cut(s)	241, 252
BtgI	CCRYGG	1 cut(s)	304
BtsCI	GGATG	2 cut(s)	175, 289
BtsI	GCAGTG	1 cut(s)	77
BtsIMutI	CAGTG	1 cut(s)	77
Cfr13I	GGNCC	1 cut(s)	85
Csp6I	GTAC	1 cut(s)	310
CviAII	CATG	4 cut(s)	107, 220, 259, 305
CviJI	RGCY	2 cut(s)	269, 353
CviKI_1	RGCY	2 cut(s)	269, 353
CviQI	GTAC	1 cut(s)	310
DdeI	CTNAG	1 cut(s)	290
DpnI	GATC	5 cut(s)	51, 62, 138, 243, 254
DpnII	GATC	5 cut(s)	49, 60, 136, 241, 252
Eam1104I	CTCTTC	2 cut(s)	168, 342
EarI	CTCTTC	2 cut(s)	168, 342
Eco130I	CCWWGG	1 cut(s)	304
Eco47I	GGWCC	1 cut(s)	85
EcoRII	CCWGG	1 cut(s)	101
EcoT14I	CCWWGG	1 cut(s)	304
ErhI	CCWWGG	1 cut(s)	304
FaeI	CATG	4 cut(s)	110, 223, 262, 308
FatI	CATG	4 cut(s)	106, 219, 258, 304
FauI	CCCGC	1 cut(s)	24
FokI	GGATG	2 cut(s)	182, 296
FspBI	CTAG	1 cut(s)	192
HapII	CCGG	1 cut(s)	83
Hin1II	CATG	4 cut(s)	110, 223, 262, 308
HpaII	CCGG	1 cut(s)	83
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	1 cut(s)	143
Hpy188I	TCNGA	2 cut(s)	54, 361
Hpy188III	TCNNGA	1 cut(s)	140
Hpy8I	GTNNAC	1 cut(s)	143
HpyAV	CCTTC	2 cut(s)	160, 311
HpyCH4IV	ACGT	2 cut(s)	127, 233
HpyCH4V	TGCA	2 cut(s)	148, 275
HpyF3I	CTNAG	1 cut(s)	290
HpySE526I	ACGT	2 cut(s)	127, 233
Hsp92II	CATG	4 cut(s)	110, 223, 262, 308
KpnI	GGTACC	1 cut(s)	313
Kzo9I	GATC	5 cut(s)	49, 60, 136, 241, 252
LmnI	GCTCC	1 cut(s)	197
LpnPI	CCDG	4 cut(s)	88, 96, 115, 350
LweI	GCATC	1 cut(s)	274
MaeI	CTAG	1 cut(s)	192
MaeII	ACGT	2 cut(s)	127, 233
MalI	GATC	5 cut(s)	51, 62, 138, 243, 254
MboI	GATC	5 cut(s)	49, 60, 136, 241, 252
MboII	GAAGA	2 cut(s)	185, 359
MflI	RGATCY	2 cut(s)	241, 252
MnlI	CCTC	3 cut(s)	99, 232, 343
MroXI	GAANNNNTTC	1 cut(s)	321
MseI	TTAA	1 cut(s)	230
MspI	CCGG	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	103
Mva1269I	GAATGC	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	103
NcoI	CCATGG	1 cut(s)	304
NdeII	GATC	5 cut(s)	49, 60, 136, 241, 252
NlaIII	CATG	4 cut(s)	110, 223, 262, 308
NlaIV	GGNNCC	3 cut(s)	87, 225, 311
PctI	GAATGC	1 cut(s)	321
PdmI	GAANNNNTTC	1 cut(s)	321
Ppu21I	YACGTR	1 cut(s)	128
PsiI	TTATAA	1 cut(s)	162
Psp1406I	AACGTT	1 cut(s)	233
Psp6I	CCWGG	1 cut(s)	101
PspGI	CCWGG	1 cut(s)	101
PspN4I	GGNNCC	3 cut(s)	87, 225, 311
PspPI	GGNCC	1 cut(s)	85
PsuI	RGATCY	2 cut(s)	241, 252
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
SaqAI	TTAA	1 cut(s)	230
Sau3AI	GATC	5 cut(s)	49, 60, 136, 241, 252
Sau96I	GGNCC	1 cut(s)	85
ScrFI	CCNGG	1 cut(s)	103
SetI	ASST	7 cut(s)	9, 104, 130, 154, 193, 236, 271
SfaNI	GCATC	1 cut(s)	274
SinI	GGWCC	1 cut(s)	85
SsiI	CCGC	2 cut(s)	31, 112
SspMI	CTAG	1 cut(s)	192
StyD4I	CCNGG	1 cut(s)	101
StyI	CCWWGG	1 cut(s)	304
TaiI	ACGT	2 cut(s)	130, 236
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TscAI	CASTG	1 cut(s)	84
TspDTI	ATGAA	3 cut(s)	17, 186, 201
TspRI	CASTG	1 cut(s)	84
VpaK11BI	GGWCC	1 cut(s)	85
XmnI	GAANNNNTTC	1 cut(s)	321
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.