AT5G06900

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
2136002 .. 2137941
1940 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G06900.1

Sequence Viewer

Length: 1524 bp
ATGGTGGATTTACAATACTTCTCCGTAATCATCCTTGTATGTCTTGGAATCACAGTCTTGATCCAAGCTATTACTAACAGATTACGTGACAGACTTCCACTCCCACCAAGCCCAACAGCTTTACCGATCATCGGTCACATTCACCTCCTTGGTCCCATAGCTCACCAAGCACTTCACAAGCTCTCAATCCGCTACGGACCTTTGATGTATCTCTTCATTGGCTCTATTCCTAATCTTATTGTCTCATCAGCCGAGATGGCGAATGAGATTCTCAAATCCAATGAACTCAACTTCCTGAACCGTCCCACAATGCAAAACGTTGACTACCTTACTTATGGCTCAGCCGATTTTTTCTCAGCGCCTTACGGGCTTCACTGGAAGTTCATGAAGAGAATTTGTATGGTGGAGCTCTTCAGCAGCAGAGCTTTAGATAGCTTTGTTTCCGTAAGAAGCGAGGAGTTAAAGAAGCTTCTAATACGAGTTCTGAAGAAAGCAGAAGCAGAAGAGAGTGTTAATCTTGGTGAACAGCTAAAGGAATTGACAAGCAACATCATAACGAGAATGATGTTCAGGAAAATGCAATCGGATAGTGACGGTGGCGAAAAATCAGAGGAGGTTATCAAAATGGTGGTGGAGTTAAATGAACTAGCCGGATTTTTCAACGTTTCTGAAACGTTTTGGTTCTTGAAAAGGCTTGACTTGCAAGGACTGAAGAAAAGGCTCAAGAATGCTCGAGACAAATATGATGTGATCATAGAAAGAATAATGGAAGAGCATGAGTCTAGTAAGAAGAATGCTACAGGAGAAAGAAACATGCTAGACGTTTTGCTCGACATATATGAAGACAAAAACGCAGAGATGAAGCTGACAAGAGAAAACATTAAGGCCTTCATCATGAATATTTATGGGGGTGGAACAGATACATCTGCCATAACAGTAGAATGGGCACTAGCAGAGCTGATAAACCATCCAGAGATCATGAAGAAAGCACAACAAGAGATAGAGCAAGTGGTGGGAAACAAGAGAGTAGTTGAAGAATCGGATTTGTGTAATCTTAGTTACACCCAAGCAGTGGTGAAGGAGACAATGAGGTTACACCCTGGAGGACCAATATTCGTGAGAGAATCTGATGAAGAATGCGCGGTGGCTGGATTCAGAATCCCGGCTAAAACAAGAGTGATAGTTAACGTGTGGGCGATTGGGAGAGACTCAAATCAATGGGAAGATCCATTGGAGTTTAGGCCTGAGAGATTTGAAGGGAGTGAATGGAAGGTCATGAGTGAGAAGATGATGTCTTTTGGAGCTGGGAGAAGAAGTTGTCCTGGAGAGAAAATGGTGTTTAGATTCGTTCCAATAATTTTAGCTGCAATAATACAGTGTTTTGAGCTGAAAGTGAAGGGAAGTGTGGATATGGATGAAGGGACTGGATCATCTTTGCCTAGAGCTACACCTTTAGTGTGTGTTCCTGTTGCTAAAGAGGCTACACAATCATTTTCTCTACTAGAACCAAATGTCAACTTCTAG

Protein Analysis

507

Amino Acids

57.48

Weight (kDa)

6.04

Isoelectric Point (pI)

44.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 35 - 481 2.3e-100 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1072
AccII CGCG 1 cut(s) 1142
AciI CCGC 2 cut(s) 190, 1142
AclI AACGTT 3 cut(s) 318, 663, 674
AclWI GGATC 3 cut(s) 55, 1220, 1435
AcsI RAATTY 1 cut(s) 393
AcuI CTGAAG 3 cut(s) 397, 506, 731
AfiI CCNNNNNNNGG 2 cut(s) 131, 1072
AflIII ACRYGT 1 cut(s) 1188
AgsI TTSAA 4 cut(s) 661, 688, 1034, 1256
AjnI CCWGG 2 cut(s) 1099, 1321
AloI GAACNNNNNNTCC 2 cut(s) 276, 308
Alw21I GWGCWC 1 cut(s) 411
Alw26I GTCTC 4 cut(s) 247, 729, 1076, 1200
AlwI GGATC 3 cut(s) 55, 1220, 1435
Ama87I CYCGRG 1 cut(s) 732
AoxI GGCC 2 cut(s) 885, 1241
ApeKI GCWGC 2 cut(s) 417, 1364
ApoI RAATTY 1 cut(s) 393
AspLEI GCGC 2 cut(s) 361, 1142
AspS9I GGNCC 3 cut(s) 152, 197, 1106
AsuC2I CCSGG 1 cut(s) 1163
AsuHPI GGTGA 4 cut(s) 134, 155, 533, 1087
AvaI CYCGRG 1 cut(s) 732
AvaII GGWCC 3 cut(s) 152, 197, 1106
BaeGI GKGCMC 1 cut(s) 949
BanII GRGCYC 1 cut(s) 411
BbsI GAAGAC 1 cut(s) 849
Bbv12I GWGCWC 1 cut(s) 411
BbvI GCAGC 2 cut(s) 429, 1351
BccI CCATC 2 cut(s) 250, 975
BciT130I CCWGG 2 cut(s) 1101, 1323
BclI TGATCA 1 cut(s) 750
BcnI CCSGG 1 cut(s) 1163
BcoDI GTCTC 4 cut(s) 247, 729, 1076, 1200
BfaI CTAG 7 cut(s) 647, 783, 818, 950, 1440, 1502, 1522
BfmI CTRYAG 1 cut(s) 798
BfoI RGCGCY 1 cut(s) 362
BglI GCCNNNNNGGC 2 cut(s) 257, 367
BisI GCNGC 2 cut(s) 418, 1365
BlpI GCTNAGC 1 cut(s) 340
BlsI GCNGC 2 cut(s) 419, 1366
Bme1390I CCNGG 3 cut(s) 1101, 1163, 1323
Bme18I GGWCC 3 cut(s) 152, 197, 1106
BmeT110I CYCGRG 1 cut(s) 732
BmgT120I GGNCC 3 cut(s) 152, 197, 1106
BmiI GGNNCC 1 cut(s) 154
BmrFI CCNGG 3 cut(s) 1101, 1163, 1323
BpiI GAAGAC 1 cut(s) 849
BpmI CTGGAG 2 cut(s) 1122, 1344
Bpu1102I GCTNAGC 1 cut(s) 340
BpuEI CTTGAG 1 cut(s) 707
BpuMI CCSGG 1 cut(s) 1163
BsaAI YACGTR 1 cut(s) 86
BsaJI CCNNGG 2 cut(s) 148, 1099
BsaXI ACNNNNNCTCC 4 cut(s) 84, 114, 1300, 1330
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 1072
Bse1I ACTGG 2 cut(s) 380, 1429
BseBI CCWGG 2 cut(s) 1101, 1323
BseDI CCNNGG 2 cut(s) 148, 1099
BseGI GGATG 3 cut(s) 30, 967, 1420
BseLI CCNNNNNNNGG 2 cut(s) 131, 1072
BseMII CTCAG 3 cut(s) 354, 369, 1236
BseNI ACTGG 2 cut(s) 380, 1429
BseRI GAGGAG 2 cut(s) 470, 626
BseSI GKGCMC 1 cut(s) 949
BseXI GCAGC 2 cut(s) 429, 1351
BseYI CCCAGC 1 cut(s) 1304
Bsh1236I CGCG 1 cut(s) 1142
BshFI GGCC 2 cut(s) 887, 1243
BsiHKAI GWGCWC 1 cut(s) 411
BsiHKCI CYCGRG 1 cut(s) 732
BsiSI CCGG 2 cut(s) 651, 1163
BslFI GGGAC 3 cut(s) 138, 288, 1435
BslI CCNNNNNNNGG 2 cut(s) 131, 1072
BsmAI GTCTC 4 cut(s) 247, 729, 1076, 1200
BsmFI GGGAC 3 cut(s) 138, 288, 1435
BsmI GAATGC 3 cut(s) 733, 799, 1142
BsnI GGCC 2 cut(s) 887, 1243
BsoBI CYCGRG 1 cut(s) 732
Bsp1286I GDGCHC 2 cut(s) 411, 949
Bsp143I GATC 6 cut(s) 60, 126, 750, 975, 1225, 1427
Bsp1720I GCTNAGC 1 cut(s) 340
BspACI CCGC 2 cut(s) 190, 1142
BspANI GGCC 2 cut(s) 887, 1243
BspCNI CTCAG 3 cut(s) 353, 368, 1237
BspFNI CGCG 1 cut(s) 1142
BspHI TCATGA 4 cut(s) 384, 894, 978, 1275
BspLI GGNNCC 1 cut(s) 154
BspPI GGATC 3 cut(s) 55, 1220, 1435
BspQI GCTCTTC 2 cut(s) 416, 765
BsrI ACTGG 2 cut(s) 380, 1429
BssECI CCNNGG 2 cut(s) 148, 1099
BssMI GATC 6 cut(s) 60, 126, 750, 975, 1225, 1427
BssT1I CCWWGG 1 cut(s) 148
Bst2UI CCWGG 2 cut(s) 1101, 1323
Bst4CI ACNGT 5 cut(s) 55, 302, 596, 937, 1377
Bst6I CTCTTC 5 cut(s) 218, 383, 416, 498, 765
BstBAI YACGTR 1 cut(s) 86
BstDEI CTNAG 4 cut(s) 340, 355, 1055, 1245
BstF5I GGATG 3 cut(s) 30, 967, 1420
BstFNI CGCG 1 cut(s) 1142
BstH2I RGCGCY 1 cut(s) 362
BstHHI GCGC 2 cut(s) 361, 1142
BstKTI GATC 6 cut(s) 63, 129, 753, 978, 1228, 1430
BstMAI GTCTC 4 cut(s) 247, 729, 1076, 1200
BstMBI GATC 6 cut(s) 60, 126, 750, 975, 1225, 1427
BstMWI GCNNNNNNNGC 5 cut(s) 167, 257, 367, 700, 1478
BstNI CCWGG 2 cut(s) 1101, 1323
BstNSI RCATGY 1 cut(s) 817
BstSCI CCNGG 3 cut(s) 1099, 1161, 1321
BstSFI CTRYAG 1 cut(s) 798
BstSLI GKGCMC 1 cut(s) 949
BstUI CGCG 1 cut(s) 1142
BstV1I GCAGC 2 cut(s) 429, 1351
BstV2I GAAGAC 1 cut(s) 849
BstX2I RGATCY 1 cut(s) 1225
BstYI RGATCY 1 cut(s) 1225
BsuRI GGCC 2 cut(s) 887, 1243
BtsCI GGATG 3 cut(s) 30, 967, 1420
BtsI GCAGTG 1 cut(s) 1077
BtsIMutI CAGTG 3 cut(s) 373, 1077, 1382
CciI TCATGA 4 cut(s) 384, 894, 978, 1275
CfoI GCGC 2 cut(s) 361, 1142
Cfr13I GGNCC 3 cut(s) 152, 197, 1106
CviAII CATG 6 cut(s) 385, 776, 814, 895, 979, 1276
DdeI CTNAG 4 cut(s) 340, 355, 1055, 1245
DpnI GATC 6 cut(s) 62, 128, 752, 977, 1227, 1429
DpnII GATC 6 cut(s) 60, 126, 750, 975, 1225, 1427
Eam1104I CTCTTC 5 cut(s) 218, 383, 416, 498, 765
EarI CTCTTC 5 cut(s) 218, 383, 416, 498, 765
Ecl136II GAGCTC 1 cut(s) 409
Eco130I CCWWGG 1 cut(s) 148
Eco147I AGGCCT 2 cut(s) 887, 1243
Eco24I GRGCYC 1 cut(s) 411
Eco47I GGWCC 3 cut(s) 152, 197, 1106
Eco53kI GAGCTC 1 cut(s) 409
Eco57I CTGAAG 3 cut(s) 397, 506, 731
Eco88I CYCGRG 1 cut(s) 732
EcoICRI GAGCTC 1 cut(s) 409
EcoRII CCWGG 2 cut(s) 1099, 1321
EcoT14I CCWWGG 1 cut(s) 148
EcoT38I GRGCYC 1 cut(s) 411
ErhI CCWWGG 1 cut(s) 148
FaeI CATG 6 cut(s) 388, 779, 817, 898, 982, 1279
FaqI GGGAC 3 cut(s) 138, 288, 1435
FatI CATG 6 cut(s) 384, 775, 813, 894, 978, 1275
FbaI TGATCA 1 cut(s) 750
Fnu4HI GCNGC 2 cut(s) 418, 1365
FokI GGATG 3 cut(s) 17, 954, 1427
FriOI GRGCYC 1 cut(s) 411
Fsp4HI GCNGC 2 cut(s) 418, 1365
FspBI CTAG 7 cut(s) 647, 783, 818, 950, 1440, 1502, 1522
GlaI GCGC 2 cut(s) 360, 1141
GluI GCNGC 2 cut(s) 418, 1365
GsaI CCCAGC 1 cut(s) 1308
GsuI CTGGAG 2 cut(s) 1122, 1344
HaeII RGCGCY 1 cut(s) 362
HaeIII GGCC 2 cut(s) 887, 1243
HapII CCGG 2 cut(s) 651, 1163
HhaI GCGC 2 cut(s) 361, 1142
Hin1II CATG 6 cut(s) 388, 779, 817, 898, 982, 1279
Hin6I GCGC 2 cut(s) 359, 1140
HinP1I GCGC 2 cut(s) 359, 1140
HincII GTYRAC 3 cut(s) 322, 1186, 1516
HindII GTYRAC 3 cut(s) 322, 1186, 1516
HindIII AAGCTT 1 cut(s) 467
HinfI GANTC 9 cut(s) 48, 268, 779, 1037, 1124, 1152, 1158, 1208, 1344
HpaI GTTAAC 1 cut(s) 1186
HpaII CCGG 2 cut(s) 651, 1163
HphI GGTGA 4 cut(s) 134, 155, 533, 1087
Hpy166II GTNNAC 4 cut(s) 322, 524, 1186, 1516
Hpy188I TCNGA 7 cut(s) 486, 586, 610, 670, 1042, 1129, 1157
Hpy8I GTNNAC 4 cut(s) 322, 524, 1186, 1516
HpyAV CCTTC 6 cut(s) 898, 1072, 1250, 1264, 1390, 1412
HpyCH4III ACNGT 5 cut(s) 55, 302, 596, 937, 1377
HpyCH4IV ACGT 6 cut(s) 85, 318, 663, 674, 822, 1188
HpyCH4V TGCA 4 cut(s) 313, 580, 703, 1367
HpyF10VI GCNNNNNNNGC 5 cut(s) 167, 257, 367, 700, 1478
HpyF3I CTNAG 4 cut(s) 340, 355, 1055, 1245
HpySE526I ACGT 6 cut(s) 85, 318, 663, 674, 822, 1188
Hsp92II CATG 6 cut(s) 388, 779, 817, 898, 982, 1279
HspAI GCGC 2 cut(s) 359, 1140
Ksp22I TGATCA 1 cut(s) 750
KspAI GTTAAC 1 cut(s) 1186
Kzo9I GATC 6 cut(s) 60, 126, 750, 975, 1225, 1427
LguI GCTCTTC 2 cut(s) 416, 765
LmnI GCTCC 2 cut(s) 406, 1301
Lsp1109I GCAGC 2 cut(s) 429, 1351
MaeI CTAG 7 cut(s) 647, 783, 818, 950, 1440, 1502, 1522
MaeII ACGT 6 cut(s) 85, 318, 663, 674, 822, 1188
MaeIII GTNAC 5 cut(s) 86, 134, 590, 1058, 1092
MalI GATC 6 cut(s) 62, 128, 752, 977, 1227, 1429
MboI GATC 6 cut(s) 60, 126, 750, 975, 1225, 1427
MflI RGATCY 1 cut(s) 1225
MhlI GDGCHC 2 cut(s) 411, 949
MluCI AATT 3 cut(s) 393, 536, 1356
MlyI GAGTC 2 cut(s) 788, 1202
MnlI CCTC 7 cut(s) 155, 448, 604, 607, 1083, 1097, 1471
MseI TTAA 5 cut(s) 461, 513, 638, 882, 1185
MspI CCGG 2 cut(s) 651, 1163
MspR9I CCNGG 3 cut(s) 1101, 1163, 1323
Mva1269I GAATGC 3 cut(s) 733, 799, 1142
MvaI CCWGG 2 cut(s) 1101, 1323
MvnI CGCG 1 cut(s) 1142
MwoI GCNNNNNNNGC 5 cut(s) 167, 257, 367, 700, 1478
NciI CCSGG 1 cut(s) 1163
NdeII GATC 6 cut(s) 60, 126, 750, 975, 1225, 1427
NlaIII CATG 6 cut(s) 388, 779, 817, 898, 982, 1279
NlaIV GGNNCC 1 cut(s) 154
NmeAIII GCCGAG 1 cut(s) 277
NmuCI GTSAC 3 cut(s) 86, 134, 590
NspI RCATGY 1 cut(s) 817
PaeR7I CTCGAG 1 cut(s) 732
PagI TCATGA 4 cut(s) 384, 894, 978, 1275
PceI AGGCCT 2 cut(s) 887, 1243
PciSI GCTCTTC 2 cut(s) 416, 765
PcsI WCGNNNNNNNCGW 1 cut(s) 828
PctI GAATGC 3 cut(s) 733, 799, 1142
PfeI GAWTC 7 cut(s) 48, 268, 1037, 1124, 1152, 1158, 1344
PflMI CCANNNNNTGG 1 cut(s) 1072
PfoI TCCNGGA 1 cut(s) 1321
PkrI GCNGC 2 cut(s) 419, 1366
PleI GAGTC 2 cut(s) 787, 1202
PpsI GAGTC 2 cut(s) 787, 1202
Ppu21I YACGTR 1 cut(s) 86
Psp124BI GAGCTC 1 cut(s) 411
Psp1406I AACGTT 3 cut(s) 318, 663, 674
Psp6I CCWGG 2 cut(s) 1099, 1321
PspFI CCCAGC 1 cut(s) 1304
PspGI CCWGG 2 cut(s) 1099, 1321
PspN4I GGNNCC 1 cut(s) 154
PspPI GGNCC 3 cut(s) 152, 197, 1106
PsuI RGATCY 1 cut(s) 1225
SacI GAGCTC 1 cut(s) 411
SapI GCTCTTC 2 cut(s) 416, 765
SaqAI TTAA 5 cut(s) 461, 513, 638, 882, 1185
SatI GCNGC 2 cut(s) 418, 1365
Sau3AI GATC 6 cut(s) 60, 126, 750, 975, 1225, 1427
Sau96I GGNCC 3 cut(s) 152, 197, 1106
SchI GAGTC 2 cut(s) 788, 1202
ScrFI CCNGG 3 cut(s) 1101, 1163, 1323
SduI GDGCHC 2 cut(s) 411, 949
SfcI CTRYAG 1 cut(s) 798
Sfr274I CTCGAG 1 cut(s) 732
SinI GGWCC 3 cut(s) 152, 197, 1106
SlaI CTCGAG 1 cut(s) 732
SmlI CTYRAG 2 cut(s) 722, 732
SmoI CTYRAG 2 cut(s) 722, 732
Sse9I AATT 3 cut(s) 393, 536, 1356
SseBI AGGCCT 2 cut(s) 887, 1243
SsiI CCGC 2 cut(s) 190, 1142
SspI AATATT 2 cut(s) 901, 1113
SspMI CTAG 7 cut(s) 647, 783, 818, 950, 1440, 1502, 1522
SstI GAGCTC 1 cut(s) 411
StuI AGGCCT 2 cut(s) 887, 1243
StyD4I CCNGG 3 cut(s) 1099, 1161, 1321
StyI CCWWGG 1 cut(s) 148
TaaI ACNGT 5 cut(s) 55, 302, 596, 937, 1377
TaiI ACGT 6 cut(s) 88, 321, 666, 677, 825, 1191
TaqI TCGA 2 cut(s) 733, 831
TaqII GACCGA 1 cut(s) 122
TasI AATT 3 cut(s) 393, 536, 1356
TfiI GAWTC 7 cut(s) 48, 268, 1037, 1124, 1152, 1158, 1344
Tru1I TTAA 5 cut(s) 461, 513, 638, 882, 1185
Tru9I TTAA 5 cut(s) 461, 513, 638, 882, 1185
TscAI CASTG 3 cut(s) 380, 1077, 1382
TseFI GTSAC 3 cut(s) 86, 134, 590
TseI GCWGC 2 cut(s) 417, 1364
Tsp45I GTSAC 3 cut(s) 86, 134, 590
TspGWI ACGGA 3 cut(s) 13, 210, 433
TspRI CASTG 3 cut(s) 380, 1077, 1382
Van91I CCANNNNNTGG 1 cut(s) 1072
VpaK11BI GGWCC 3 cut(s) 152, 197, 1106
XapI RAATTY 1 cut(s) 393
XceI RCATGY 1 cut(s) 817
XhoI CTCGAG 1 cut(s) 732
XspI CTAG 7 cut(s) 647, 783, 818, 950, 1440, 1502, 1522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.