RLG00000023481

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0004503
Physical Location & Seq
Forward (+)
24417263 .. 24418031
769 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023481

Sequence Viewer

Length: 426 bp
ATGGCCGTACCAATCATTGGACACCTTCACCTCCTTGCCCCAATACCTCACCAAGCTCTTCACAAGCTATCAAACCGCCTTGGACCACTAGTTCACATCTTTCTTGGTTCTGTCCCTTGTATAGTTGTTTCCTCCCCAGAAATGGCGAAAGAGTTTCTCAAGACTCATGAAGCTTCCTTCTCCAACAGACCACACATATCTGCTGTTGATTATCTCACATATGGACGAAAAGGGGCTGATGAGGGATTTGGGAAAAGGCTTAAGGAAGTGTGTGATCAGTTCGACACTATGATGCAGAGGATCATAAAGGAGCACCAAGAGGCGCGAAAGAAGGAGGAAGTGGGTGAAAGTGATGATGATGTTAAAGATTTGTTGACATTTTACTTGATATATCTGAAGACGACACTACTACAATATGGGCCATAG

Protein Analysis

142

Amino Acids

15.97

Weight (kDa)

6.7

Isoelectric Point (pI)

32.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 3 - 78 7.4e-11 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 17
AccII CGCG 1 cut(s) 325
AciI CCGC 1 cut(s) 76
AclWI GGATC 1 cut(s) 308
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 416
AfaI GTAC 1 cut(s) 9
AfiI CCNNNNNNNGG 2 cut(s) 17, 142
AflII CTTAAG 1 cut(s) 260
AhlI ACTAGT 1 cut(s) 88
AloI GAACNNNNNNTCC 2 cut(s) 75, 107
AluBI AGCT 3 cut(s) 56, 67, 173
AluI AGCT 3 cut(s) 56, 67, 173
Alw21I GWGCWC 1 cut(s) 315
AlwI GGATC 1 cut(s) 308
AoxI GGCC 2 cut(s) 3, 419
AspLEI GCGC 1 cut(s) 325
AspS9I GGNCC 2 cut(s) 83, 419
AsuHPI GGTGA 3 cut(s) 20, 41, 356
AvaII GGWCC 1 cut(s) 83
BbsI GAAGAC 1 cut(s) 404
Bbv12I GWGCWC 1 cut(s) 315
BclI TGATCA 1 cut(s) 274
BcuI ACTAGT 1 cut(s) 88
BfaI CTAG 1 cut(s) 89
BfrI CTTAAG 1 cut(s) 260
Bme18I GGWCC 1 cut(s) 83
BmgT120I GGNCC 2 cut(s) 83, 419
BmsI GCATC 1 cut(s) 282
BpiI GAAGAC 1 cut(s) 404
BpuEI CTTGAG 1 cut(s) 143
BsaJI CCNNGG 1 cut(s) 79
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 142
BseDI CCNNGG 1 cut(s) 79
BseLI CCNNNNNNNGG 2 cut(s) 17, 142
Bsh1236I CGCG 1 cut(s) 325
BshFI GGCC 2 cut(s) 5, 421
BsiHKAI GWGCWC 1 cut(s) 315
BslFI GGGAC 1 cut(s) 98
BslI CCNNNNNNNGG 2 cut(s) 17, 142
BsmFI GGGAC 1 cut(s) 98
BsnI GGCC 2 cut(s) 5, 421
Bsp1286I GDGCHC 1 cut(s) 315
Bsp143I GATC 2 cut(s) 274, 300
BspACI CCGC 1 cut(s) 76
BspANI GGCC 2 cut(s) 5, 421
BspFNI CGCG 1 cut(s) 325
BspHI TCATGA 1 cut(s) 166
BspPI GGATC 1 cut(s) 308
BspQI GCTCTTC 1 cut(s) 63
BspTI CTTAAG 1 cut(s) 260
BssECI CCNNGG 1 cut(s) 79
BssMI GATC 2 cut(s) 274, 300
BssT1I CCWWGG 1 cut(s) 79
Bst6I CTCTTC 1 cut(s) 63
BstAFI CTTAAG 1 cut(s) 260
BstFNI CGCG 1 cut(s) 325
BstHHI GCGC 1 cut(s) 325
BstKTI GATC 2 cut(s) 277, 303
BstMBI GATC 2 cut(s) 274, 300
BstUI CGCG 1 cut(s) 325
BstV2I GAAGAC 1 cut(s) 404
BsuRI GGCC 2 cut(s) 5, 421
CciI TCATGA 1 cut(s) 166
CfoI GCGC 1 cut(s) 325
Cfr13I GGNCC 2 cut(s) 83, 419
Csp6I GTAC 1 cut(s) 8
CviAII CATG 1 cut(s) 167
CviJI RGCY 7 cut(s) 5, 56, 67, 173, 236, 259, 421
CviKI_1 RGCY 7 cut(s) 5, 56, 67, 173, 236, 259, 421
CviQI GTAC 1 cut(s) 8
DpnI GATC 2 cut(s) 276, 302
DpnII GATC 2 cut(s) 274, 300
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 79
Eco47I GGWCC 1 cut(s) 83
Eco57I CTGAAG 1 cut(s) 416
EcoT14I CCWWGG 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 79
FaeI CATG 1 cut(s) 170
FaqI GGGAC 1 cut(s) 98
FatI CATG 1 cut(s) 166
FauNDI CATATG 1 cut(s) 220
FbaI TGATCA 1 cut(s) 274
FspBI CTAG 1 cut(s) 89
GlaI GCGC 1 cut(s) 324
HaeIII GGCC 2 cut(s) 5, 421
HhaI GCGC 1 cut(s) 325
Hin1II CATG 1 cut(s) 170
Hin6I GCGC 1 cut(s) 323
HinP1I GCGC 1 cut(s) 323
HincII GTYRAC 1 cut(s) 375
HindII GTYRAC 1 cut(s) 375
HindIII AAGCTT 1 cut(s) 171
HinfI GANTC 1 cut(s) 163
HphI GGTGA 3 cut(s) 20, 41, 356
Hpy166II GTNNAC 2 cut(s) 94, 375
Hpy188I TCNGA 1 cut(s) 396
Hpy188III TCNNGA 2 cut(s) 160, 167
Hpy8I GTNNAC 2 cut(s) 94, 375
HpyAV CCTTC 3 cut(s) 35, 187, 325
HpyCH4V TGCA 1 cut(s) 295
Hsp92II CATG 1 cut(s) 170
HspAI GCGC 1 cut(s) 323
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 2 cut(s) 274, 300
LguI GCTCTTC 1 cut(s) 63
LmnI GCTCC 1 cut(s) 310
LpnPI CCDG 1 cut(s) 150
LweI GCATC 1 cut(s) 282
MaeI CTAG 1 cut(s) 89
MalI GATC 2 cut(s) 276, 302
MboI GATC 2 cut(s) 274, 300
MboII GAAGA 2 cut(s) 50, 409
MhlI GDGCHC 1 cut(s) 315
MlyI GAGTC 1 cut(s) 157
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 7 cut(s) 41, 57, 142, 235, 291, 313, 328
MseI TTAA 2 cut(s) 261, 363
MslI CAYNNNNRTG 1 cut(s) 290
MspCI CTTAAG 1 cut(s) 260
MvnI CGCG 1 cut(s) 325
NdeI CATATG 1 cut(s) 220
NdeII GATC 2 cut(s) 274, 300
NlaIII CATG 1 cut(s) 170
PagI TCATGA 1 cut(s) 166
PciSI GCTCTTC 1 cut(s) 63
PflMI CCANNNNNTGG 1 cut(s) 17
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
PspPI GGNCC 2 cut(s) 83, 419
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
RseI CAYNNNNRTG 1 cut(s) 290
SapI GCTCTTC 1 cut(s) 63
SaqAI TTAA 2 cut(s) 261, 363
Sau3AI GATC 2 cut(s) 274, 300
Sau96I GGNCC 2 cut(s) 83, 419
SchI GAGTC 1 cut(s) 157
SduI GDGCHC 1 cut(s) 315
SetI ASST 6 cut(s) 27, 33, 49, 58, 69, 175
SfaNI GCATC 1 cut(s) 282
SinI GGWCC 1 cut(s) 83
SmiMI CAYNNNNRTG 1 cut(s) 290
SmlI CTYRAG 2 cut(s) 158, 260
SmoI CTYRAG 2 cut(s) 158, 260
SpeI ACTAGT 1 cut(s) 88
SsiI CCGC 1 cut(s) 76
SspMI CTAG 1 cut(s) 89
StyI CCWWGG 1 cut(s) 79
TaqI TCGA 1 cut(s) 282
Tru1I TTAA 2 cut(s) 261, 363
Tru9I TTAA 2 cut(s) 261, 363
TspDTI ATGAA 1 cut(s) 183
Van91I CCANNNNNTGG 1 cut(s) 17
Vha464I CTTAAG 1 cut(s) 260
VpaK11BI GGWCC 1 cut(s) 83
XspI CTAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.