RLG00000023470

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
24308553 .. 24310210
1658 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023470

Sequence Viewer

Length: 1563 bp
ATGGCGAATTTCCATGAGTACCTTGTTCTTCTCGTCATATGGTTAGTCTCTTTCATCTTTTTCCGAACCATCTTCACCAAATCTCGAACTCAATATCGTCTGCCTCCGAGTCCACGGGCCCTTCCCATCATCGGACATCTTCACCTCCTTGGCCGAATCCCTCACCAAGCTCTTCACAAGCTCTCATCTCGACACGGACCCCTAATTCACCTCTACTTTGGCTCCAAACCCTGTGTCGTCGTTTCCTCACCCGAAATGGCCAGAAAATGCCTAAAAACCCATGAAATGTCCTTCTTGAACCGCCCCAAAATGACCAACGTAGACTACCTTACTTATGGCTCAGCCGACTTTGTCATGGCACCTTATGGACCTTACTGGAAATTTATGAAAAAGCTTTGCATGTCTGAGCTGCTTGGGGGCCAAATCCTAGACCAAAATCGACCAATTAGGCACGAAGAGATAGAGCGATTCTTACATTTCATGGTTAAGAAAGCTGACAAGGGAGAACAAGTAGATGTTGGAGGAGAGCTTGTACGGTTAACAAATAACATCATCTCGCGGATGGCATTTAATCGAAGGTGTTCGGATGATGATGAAGAAGCATACGAGGTGAGGGAAGTGCTGGAAGAGATGTGTGAGCTTGCCGGGAGGTTCAATTTCTCGGATATGTTTTGGTTCTGCAAGAATTTGGACTTGCAAGGATATGGAAAAAGGCTTAAAGATGTGCGTAACAGATATGACAAAATGATGGGAAAGATTATGGAGGAGCATGAGGAGTCAAGAAGGAAGAGGAAGAATGATCCATCTAAAGGTGATAACGCAGTGAATTTGCTTGATATTCTGCTTGATATATATGAAGACCAAAGCTCAGAGATCAAATTGACAAGAGAGAACATAAAGGGCTTTATCATGAATATGTTCGGTGCTGGGACTGATACATCATCGGTAACAATAGAATGGGCACTATCGGAGCTAATCAACCGCCCAAACGTGATGGCAAAAGCAAGGGCAGAAATTGATTCCATAGTGGGAACCAACAGATTAGTAAAAGAATCTGATATCGTCAATCTTCCCTATCTCCAAGCCATAGTAAAAGAAACACTGAGGCTGCACCCAACAGGCCCAATGATCGCGAGAGAGAGCACTGAACATTGCACCATCAACGGCTATGATATTCCGGCGAAGACCAGACTCTTTGTCAACGTTTGGGCCATCAATAGGGACCCAAAGCACTGGAAGGACCCGCTCGAGTTCGTGCCGGAGAGGTTTTGGAAGAGCACACTGGATGTGAGAGGCCAGAGCTTCCAGTTTCTGCCGTTTGGGAGTGGAAGAAGAAGTTGCCCTGGAACTAGTTGGGCTCTTCAGGTTGTTCATGCAACACTGGCAGCTGTAATTCAGTGCTTTGATTGGAAGGTTGGGGATGGAGCTGCTGGAATTGATGATGCGGTGGGGATGGAAGAAGGACCTGGGATATCACTTCCTAGGGCTAAACCTCTGGTTTGTGTTCCTTCGGTCAGGTTTAGCCCATTTCCATCAACCGTACCTGATATTGCTCTTTCTTAG

Protein Analysis

521

Amino Acids

59.42

Weight (kDa)

8.54

Isoelectric Point (pI)

41.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 35 - 475 4.1e-106 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 358
AccBSI CCGCTC 1 cut(s) 1246
AccI GTMKAC 1 cut(s) 321
AccII CGCG 2 cut(s) 559, 1133
AciI CCGC 5 cut(s) 301, 559, 982, 1244, 1445
AclI AACGTT 1 cut(s) 1203
AclWI GGATC 1 cut(s) 794
AcoI YGGCCR 2 cut(s) 151, 258
AcsI RAATTY 4 cut(s) 7, 380, 685, 826
AcuI CTGAAG 1 cut(s) 1346
AfaI GTAC 3 cut(s) 20, 534, 1542
AfiI CCNNNNNNNGG 3 cut(s) 131, 809, 1218
AgsI TTSAA 2 cut(s) 298, 655
AhdI GACNNNNNGTC 1 cut(s) 1196
AhlI ACTAGT 1 cut(s) 1349
AjnI CCWGG 2 cut(s) 1342, 1465
Alw21I GWGCWC 2 cut(s) 1145, 1280
Alw26I GTCTC 1 cut(s) 52
AlwI GGATC 1 cut(s) 794
AlwNI CAGNNNCTG 1 cut(s) 1312
Ama87I CYCGRG 1 cut(s) 1247
AoxI GGCC 7 cut(s) 117, 151, 258, 418, 1120, 1209, 1294
ApaI GGGCCC 1 cut(s) 121
ApeKI GCWGC 4 cut(s) 409, 1108, 1385, 1427
ApoI RAATTY 4 cut(s) 7, 380, 685, 826
ArsI GACNNNNNNTTYG 2 cut(s) 219, 251
Asp700I GAANNNNTTC 2 cut(s) 580, 917
AspA2I CCTAGG 1 cut(s) 1481
AsuC2I CCSGG 1 cut(s) 646
AsuHPI GGTGA 7 cut(s) 67, 134, 155, 200, 240, 622, 824
AvaI CYCGRG 1 cut(s) 1247
AvaII GGWCC 5 cut(s) 197, 368, 1222, 1240, 1463
AvrII CCTAGG 1 cut(s) 1481
BaeGI GKGCMC 2 cut(s) 121, 964
BalI TGGCCA 1 cut(s) 260
BanI GGYRCC 1 cut(s) 358
BanII GRGCYC 2 cut(s) 121, 1360
BbsI GAAGAC 2 cut(s) 864, 1190
Bbv12I GWGCWC 2 cut(s) 1145, 1280
BbvI GCAGC 4 cut(s) 396, 1095, 1397, 1414
BceAI ACGGC 2 cut(s) 1180, 1300
BciT130I CCWGG 2 cut(s) 1344, 1467
BcnI CCSGG 1 cut(s) 646
BcoDI GTCTC 1 cut(s) 52
BcuI ACTAGT 1 cut(s) 1349
BfaI CTAG 3 cut(s) 428, 1350, 1482
BisI GCNGC 4 cut(s) 410, 1109, 1386, 1428
BlnI CCTAGG 1 cut(s) 1481
BlpI GCTNAGC 1 cut(s) 340
BlsI GCNGC 4 cut(s) 411, 1110, 1387, 1429
Bme1390I CCNGG 3 cut(s) 646, 1344, 1467
Bme18I GGWCC 5 cut(s) 197, 368, 1222, 1240, 1463
BmeRI GACNNNNNGTC 1 cut(s) 1196
BmeT110I CYCGRG 1 cut(s) 1247
BmiI GGNNCC 9 cut(s) 119, 199, 223, 360, 419, 1033, 1223, 1224, 1242
BmrFI CCNGG 3 cut(s) 646, 1344, 1467
BmsI GCATC 1 cut(s) 1432
BpiI GAAGAC 2 cut(s) 864, 1190
Bpu1102I GCTNAGC 1 cut(s) 340
BpuMI CCSGG 1 cut(s) 646
BsaJI CCNNGG 5 cut(s) 113, 148, 1342, 1466, 1481
BsaXI ACNNNNNCTCC 6 cut(s) 206, 236, 495, 516, 525, 546
Bsc4I CCNNNNNNNGG 3 cut(s) 131, 809, 1218
Bse1I ACTGG 5 cut(s) 380, 1238, 1287, 1306, 1386
Bse3DI GCAATG 1 cut(s) 1150
BseBI CCWGG 2 cut(s) 1344, 1467
BseDI CCNNGG 5 cut(s) 113, 148, 1342, 1466, 1481
BseGI GGATG 5 cut(s) 567, 592, 1291, 1426, 1458
BseLI CCNNNNNNNGG 3 cut(s) 131, 809, 1218
BseMI GCAATG 1 cut(s) 1150
BseMII CTCAG 4 cut(s) 354, 396, 882, 1094
BseNI ACTGG 5 cut(s) 380, 1238, 1287, 1306, 1386
BseRI GAGGAG 3 cut(s) 537, 779, 788
BseSI GKGCMC 2 cut(s) 121, 964
BseXI GCAGC 4 cut(s) 396, 1095, 1397, 1414
BseYI CCCAGC 1 cut(s) 926
BsgI GTGCAG 1 cut(s) 1094
Bsh1236I CGCG 2 cut(s) 559, 1133
BshFI GGCC 7 cut(s) 119, 153, 260, 420, 1122, 1211, 1296
BshNI GGYRCC 1 cut(s) 358
BsiHKAI GWGCWC 2 cut(s) 1145, 1280
BsiHKCI CYCGRG 1 cut(s) 1247
BsiSI CCGG 3 cut(s) 645, 1178, 1259
BslFI GGGAC 2 cut(s) 943, 1235
BslI CCNNNNNNNGG 3 cut(s) 131, 809, 1218
BsmAI GTCTC 1 cut(s) 52
BsmFI GGGAC 2 cut(s) 943, 1235
BsnI GGCC 7 cut(s) 119, 153, 260, 420, 1122, 1211, 1296
BsoBI CYCGRG 1 cut(s) 1247
Bsp120I GGGCCC 1 cut(s) 117
Bsp1286I GDGCHC 5 cut(s) 121, 964, 1145, 1280, 1360
Bsp143I GATC 3 cut(s) 799, 873, 1128
Bsp1720I GCTNAGC 1 cut(s) 340
Bsp68I TCGCGA 1 cut(s) 1133
BspACI CCGC 5 cut(s) 301, 559, 982, 1244, 1445
BspANI GGCC 7 cut(s) 119, 153, 260, 420, 1122, 1211, 1296
BspCNI CTCAG 4 cut(s) 353, 397, 881, 1095
BspFNI CGCG 2 cut(s) 559, 1133
BspHI TCATGA 1 cut(s) 909
BspLI GGNNCC 9 cut(s) 119, 199, 223, 360, 419, 1033, 1223, 1224, 1242
BspPI GGATC 1 cut(s) 794
BspQI GCTCTTC 3 cut(s) 177, 1268, 1365
BspT107I GGYRCC 1 cut(s) 358
BsrBI CCGCTC 1 cut(s) 1246
BsrDI GCAATG 1 cut(s) 1150
BsrI ACTGG 5 cut(s) 380, 1238, 1287, 1306, 1386
BssECI CCNNGG 5 cut(s) 113, 148, 1342, 1466, 1481
BssMI GATC 3 cut(s) 799, 873, 1128
BssT1I CCWWGG 2 cut(s) 148, 1481
Bst2UI CCWGG 2 cut(s) 1344, 1467
Bst4CI ACNGT 2 cut(s) 537, 1540
Bst6I CTCTTC 6 cut(s) 177, 450, 621, 782, 1268, 1365
BstC8I GCNNGC 1 cut(s) 642
BstDEI CTNAG 5 cut(s) 340, 405, 868, 1103, 1560
BstDSI CCRYGG 1 cut(s) 113
BstF5I GGATG 5 cut(s) 567, 592, 1291, 1426, 1458
BstFNI CGCG 2 cut(s) 559, 1133
BstKTI GATC 3 cut(s) 802, 876, 1131
BstMAI GTCTC 1 cut(s) 52
BstMBI GATC 3 cut(s) 799, 873, 1128
BstMWI GCNNNNNNNGC 1 cut(s) 1382
BstNI CCWGG 2 cut(s) 1344, 1467
BstNSI RCATGY 1 cut(s) 403
BstSCI CCNGG 3 cut(s) 644, 1342, 1465
BstSLI GKGCMC 2 cut(s) 121, 964
BstUI CGCG 2 cut(s) 559, 1133
BstV1I GCAGC 4 cut(s) 396, 1095, 1397, 1414
BstV2I GAAGAC 2 cut(s) 864, 1190
BstXI CCANNNNNNTGG 1 cut(s) 1233
BsuRI GGCC 7 cut(s) 119, 153, 260, 420, 1122, 1211, 1296
BtgI CCRYGG 1 cut(s) 113
BtsCI GGATG 5 cut(s) 567, 592, 1291, 1426, 1458
BtsI GCAGTG 1 cut(s) 828
BtsIMutI CAGTG 7 cut(s) 828, 1100, 1143, 1231, 1280, 1379, 1403
BtuMI TCGCGA 1 cut(s) 1133
Cac8I GCNNGC 1 cut(s) 642
CaiI CAGNNNCTG 1 cut(s) 1312
CciI TCATGA 1 cut(s) 909
Csp6I GTAC 3 cut(s) 19, 533, 1541
CviAII CATG 8 cut(s) 14, 281, 355, 400, 481, 770, 910, 1373
CviQI GTAC 3 cut(s) 19, 533, 1541
DdeI CTNAG 5 cut(s) 340, 405, 868, 1103, 1560
DpnI GATC 3 cut(s) 801, 875, 1130
DpnII GATC 3 cut(s) 799, 873, 1128
DriI GACNNNNNGTC 1 cut(s) 1196
EaeI YGGCCR 2 cut(s) 151, 258
Eam1104I CTCTTC 6 cut(s) 177, 450, 621, 782, 1268, 1365
Eam1105I GACNNNNNGTC 1 cut(s) 1196
EarI CTCTTC 6 cut(s) 177, 450, 621, 782, 1268, 1365
Eco130I CCWWGG 2 cut(s) 148, 1481
Eco24I GRGCYC 2 cut(s) 121, 1360
Eco32I GATATC 2 cut(s) 1060, 1473
Eco47I GGWCC 5 cut(s) 197, 368, 1222, 1240, 1463
Eco57I CTGAAG 1 cut(s) 1346
Eco88I CYCGRG 1 cut(s) 1247
EcoO109I RGGNCCY 4 cut(s) 118, 1222, 1240, 1463
EcoRII CCWGG 2 cut(s) 1342, 1465
EcoRV GATATC 2 cut(s) 1060, 1473
EcoT14I CCWWGG 2 cut(s) 148, 1481
EcoT38I GRGCYC 2 cut(s) 121, 1360
ErhI CCWWGG 2 cut(s) 148, 1481
FaeI CATG 8 cut(s) 17, 284, 358, 403, 484, 773, 913, 1376
FaqI GGGAC 2 cut(s) 943, 1235
FatI CATG 8 cut(s) 13, 280, 354, 399, 480, 769, 909, 1372
FauI CCCGC 1 cut(s) 1251
FauNDI CATATG 1 cut(s) 38
FblI GTMKAC 1 cut(s) 321
Fnu4HI GCNGC 4 cut(s) 410, 1109, 1386, 1428
FokI GGATG 5 cut(s) 574, 599, 1298, 1433, 1465
FriOI GRGCYC 2 cut(s) 121, 1360
Fsp4HI GCNGC 4 cut(s) 410, 1109, 1386, 1428
FspBI CTAG 3 cut(s) 428, 1350, 1482
GluI GCNGC 4 cut(s) 410, 1109, 1386, 1428
GsaI CCCAGC 1 cut(s) 930
HaeIII GGCC 7 cut(s) 119, 153, 260, 420, 1122, 1211, 1296
HapII CCGG 3 cut(s) 645, 1178, 1259
Hin1II CATG 8 cut(s) 17, 284, 358, 403, 484, 773, 913, 1376
HincII GTYRAC 2 cut(s) 540, 1201
HindII GTYRAC 2 cut(s) 540, 1201
HindIII AAGCTT 1 cut(s) 392
HinfI GANTC 7 cut(s) 109, 156, 468, 776, 1019, 1052, 1191
HpaI GTTAAC 1 cut(s) 540
HpaII CCGG 3 cut(s) 645, 1178, 1259
HphI GGTGA 7 cut(s) 67, 134, 155, 200, 240, 622, 824
Hpy166II GTNNAC 4 cut(s) 113, 322, 540, 1201
Hpy188I TCNGA 9 cut(s) 65, 108, 134, 406, 586, 664, 871, 970, 1057
Hpy188III TCNNGA 6 cut(s) 84, 189, 295, 780, 910, 1132
Hpy8I GTNNAC 4 cut(s) 113, 322, 540, 1201
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 8 cut(s) 131, 301, 570, 777, 1231, 1405, 1454, 1518
HpyCH4III ACNGT 2 cut(s) 537, 1540
HpyCH4IV ACGT 3 cut(s) 318, 990, 1203
HpyCH4V TGCA 6 cut(s) 399, 681, 697, 1111, 1155, 1376
HpyF10VI GCNNNNNNNGC 1 cut(s) 1382
HpyF3I CTNAG 5 cut(s) 340, 405, 868, 1103, 1560
HpySE526I ACGT 3 cut(s) 318, 990, 1203
Hsp92II CATG 8 cut(s) 17, 284, 358, 403, 484, 773, 913, 1376
KflI GGGWCCC 1 cut(s) 1222
KspAI GTTAAC 1 cut(s) 540
Kzo9I GATC 3 cut(s) 799, 873, 1128
LguI GCTCTTC 3 cut(s) 177, 1268, 1365
LmnI GCTCC 4 cut(s) 227, 766, 970, 1424
Lsp1109I GCAGC 4 cut(s) 396, 1095, 1397, 1414
LweI GCATC 1 cut(s) 1432
MaeI CTAG 3 cut(s) 428, 1350, 1482
MaeII ACGT 3 cut(s) 318, 990, 1203
MaeIII GTNAC 2 cut(s) 728, 946
MalI GATC 3 cut(s) 801, 875, 1130
MbiI CCGCTC 1 cut(s) 1246
MboI GATC 3 cut(s) 799, 873, 1128
MhlI GDGCHC 5 cut(s) 121, 964, 1145, 1280, 1360
MlsI TGGCCA 1 cut(s) 260
MluNI TGGCCA 1 cut(s) 260
MlyI GAGTC 3 cut(s) 118, 785, 1185
MmeI TCCRAC 1 cut(s) 499
Mox20I TGGCCA 1 cut(s) 260
MroXI GAANNNNTTC 2 cut(s) 580, 917
MscI TGGCCA 1 cut(s) 260
MseI TTAA 4 cut(s) 486, 539, 570, 717
MslI CAYNNNNRTG 1 cut(s) 914
Msp20I TGGCCA 1 cut(s) 260
MspA1I CMGCKG 1 cut(s) 1388
MspI CCGG 3 cut(s) 645, 1178, 1259
MspR9I CCNGG 3 cut(s) 646, 1344, 1467
MvaI CCWGG 2 cut(s) 1344, 1467
MvnI CGCG 2 cut(s) 559, 1133
MwoI GCNNNNNNNGC 1 cut(s) 1382
NciI CCSGG 1 cut(s) 646
NdeI CATATG 1 cut(s) 38
NdeII GATC 3 cut(s) 799, 873, 1128
NlaIII CATG 8 cut(s) 17, 284, 358, 403, 484, 773, 913, 1376
NlaIV GGNNCC 9 cut(s) 119, 199, 223, 360, 419, 1033, 1223, 1224, 1242
NruI TCGCGA 1 cut(s) 1133
NspI RCATGY 1 cut(s) 403
PaeR7I CTCGAG 1 cut(s) 1247
PagI TCATGA 1 cut(s) 909
PciSI GCTCTTC 3 cut(s) 177, 1268, 1365
PdmI GAANNNNTTC 2 cut(s) 580, 917
PfeI GAWTC 4 cut(s) 156, 468, 1019, 1052
PflFI GACNNNGTC 1 cut(s) 350
PkrI GCNGC 4 cut(s) 411, 1110, 1387, 1429
PleI GAGTC 3 cut(s) 117, 784, 1185
PpsI GAGTC 3 cut(s) 117, 784, 1185
PpuMI RGGWCCY 3 cut(s) 1222, 1240, 1463
Psp1406I AACGTT 1 cut(s) 1203
Psp5II RGGWCCY 3 cut(s) 1222, 1240, 1463
Psp6I CCWGG 2 cut(s) 1342, 1465
PspFI CCCAGC 1 cut(s) 926
PspGI CCWGG 2 cut(s) 1342, 1465
PspN4I GGNNCC 9 cut(s) 119, 199, 223, 360, 419, 1033, 1223, 1224, 1242
PspOMI GGGCCC 1 cut(s) 117
PspPPI RGGWCCY 3 cut(s) 1222, 1240, 1463
PspXI VCTCGAGB 1 cut(s) 1247
PstNI CAGNNNCTG 1 cut(s) 1312
PsyI GACNNNGTC 1 cut(s) 350
PvuII CAGCTG 1 cut(s) 1388
RruI TCGCGA 1 cut(s) 1133
RsaI GTAC 3 cut(s) 20, 534, 1542
RsaNI GTAC 3 cut(s) 19, 533, 1541
RseI CAYNNNNRTG 1 cut(s) 914
SapI GCTCTTC 3 cut(s) 177, 1268, 1365
SaqAI TTAA 4 cut(s) 486, 539, 570, 717
SatI GCNGC 4 cut(s) 410, 1109, 1386, 1428
Sau3AI GATC 3 cut(s) 799, 873, 1128
SchI GAGTC 3 cut(s) 118, 785, 1185
ScrFI CCNGG 3 cut(s) 646, 1344, 1467
SduI GDGCHC 5 cut(s) 121, 964, 1145, 1280, 1360
SfaNI GCATC 1 cut(s) 1432
Sfr274I CTCGAG 1 cut(s) 1247
SinI GGWCC 5 cut(s) 197, 368, 1222, 1240, 1463
SlaI CTCGAG 1 cut(s) 1247
SmiMI CAYNNNNRTG 1 cut(s) 914
SmlI CTYRAG 1 cut(s) 1247
SmoI CTYRAG 1 cut(s) 1247
SpeI ACTAGT 1 cut(s) 1349
SsiI CCGC 5 cut(s) 301, 559, 982, 1244, 1445
SspMI CTAG 3 cut(s) 428, 1350, 1482
StyD4I CCNGG 3 cut(s) 644, 1342, 1465
StyI CCWWGG 2 cut(s) 148, 1481
TaaI ACNGT 2 cut(s) 537, 1540
TaiI ACGT 3 cut(s) 321, 993, 1206
TaqI TCGA 5 cut(s) 85, 190, 439, 574, 1248
TaqII GACCGA 1 cut(s) 1501
TfiI GAWTC 4 cut(s) 156, 468, 1019, 1052
Tru1I TTAA 4 cut(s) 486, 539, 570, 717
Tru9I TTAA 4 cut(s) 486, 539, 570, 717
TscAI CASTG 7 cut(s) 828, 1107, 1150, 1238, 1287, 1386, 1403
TseI GCWGC 4 cut(s) 409, 1108, 1385, 1427
TspDTI ATGAA 8 cut(s) 43, 297, 401, 469, 609, 870, 926, 1361
TspGWI ACGGA 1 cut(s) 210
TspRI CASTG 7 cut(s) 828, 1107, 1150, 1238, 1287, 1386, 1403
Tth111I GACNNNGTC 1 cut(s) 350
VpaK11BI GGWCC 5 cut(s) 197, 368, 1222, 1240, 1463
XapI RAATTY 4 cut(s) 7, 380, 685, 826
XceI RCATGY 1 cut(s) 403
XhoI CTCGAG 1 cut(s) 1247
XmaJI CCTAGG 1 cut(s) 1481
XmiI GTMKAC 1 cut(s) 321
XmnI GAANNNNTTC 2 cut(s) 580, 917
XspI CTAG 3 cut(s) 428, 1350, 1482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.