Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002205.1

Orthogroup ID

OG0004503

Physical Location & Seq

Genomic Coordinates Reverse (-)

143421 .. 145056

Gene Structure 1636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002205.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

atgacgaatttccatgagtaccttgttcttctcctcgtatggttagtcccgttcatctttttccgaaccatcttcaccaaatctcgaactcaccatcgtctgcctccgagtccacgggcccttcccatcatcggacatcttcacctccttggccgaatccctcaccaagctcttcacaagctctcatcccgacacggacccctaattcaactctaccttggctccaaaccctgtgtcgtcgtttcctcaccagaaatggccagagaatgcctaaaaacccatgaaatgtccttcttgaaccgtcccaaaatgaccaacgtagactaccttacttatggctcagccgactttgtcatggcaccttatggaccttactggaaatttatgaaaaagctttgcatgtctgagctgcttgggggccgaatcttagaccaaaatctaccaattaggcacgaagagatagagcgattcttacatttcatggttaagaaagctgacaagggagaacaagtagatgttggaggagagcttgtacggtgttcggatgatgatgaagaagcatacgaggtgagggaagtgctggaagagatgtgtgagcttgccgggaggttcaatttctcggatatgttttggttttgcaagaatttggacttgcaaggatatggaaaaagggttaaagatgtgcgtaacagatatgacaaaatgatgggaaagattatggaggagcatgaggagtcaagaaggaagaggaagaatgatccatctaaatgtgataacgcagtgaatttgattgatattctgcttgatatatatgaagaccaaagctcagagatcaaattgacaagagagaacataaagggctttatcatgaatatgttcggtgctgggactgatacatcatcggtaacaatagaatgggcactatcggagctaatcaaccgcctgaacgtgatggcaaaagcaagagaagaaattgattccatagtgggaaccaacagattagtaaaagaatctgatatcgtcaatcttccctatctccaagccataacaattgtcaacgtttgggccatcaatagggacccaaagcacaggaaggacccgctcgagttcgtgtcggagaggttttggaagatcacactggatgtgagaggccagagcttccagtttctgccgtttgggagtggaagaagaagttgccctggaactagtttggctcttcaggttgttaatgcaacactggcagctgtaattcagtgctttgattggaaggttggggatggagctgctggaattgatggtacggtggggatggaagaaggacctgggatatcacttcctagggctaaacctctggtttgtgttccttcggtcaggtttagtccatttccatcaacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00830 ko00909 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00830 map00909 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

465

Amino Acids

53.1

Weight (kDa)

7.6

Isoelectric Point (pI)

42.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06900
fragaria_vesca	FvH4_6g22820 FvH4_6g22840
malus_domestica	MD14G1063000.v1.1
prunus_persica	Prupe.7G071900_v2.0.a1 Prupe.7G072200_v2.0.a1 Prupe.7G072300_v2.0.a1 Prupe.7G072400_v2.0.a1
pyrus_communis	pycom14g05060
rosa_chinensis	RchiOBHm_Chr3g0480431 RchiOBHm_Chr3g0480461
rosa_laevigata	RLG00000023470 RLG00000023477 RLG00000023481 RLG00000023482
rosa_multiflora	Rmu_sc0002205.1_g000025 Rmu_sc0002205.1_g000030 Rmu_sc0002205.1_g000033
rosa_roxburghii	Rroxscaffold_6G00401330 Rroxscaffold_6G00401350
rosa_rugosa	Rorug03G0184000 Rorug03G0184100 Rorug03G0184200
rosa_samantha	Rh3AG235400 Rh3AG235500 Rh3BG268300 Rh3BG268700 Rh3CG265400 Rh3DG261300 Rh3DG261400
rosa_wichuraiana	Rw3G021130 Rw3G021140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	358
AccBSI	CCGCTC	1 cut(s)	1102
AccI	GTMKAC	1 cut(s)	321
AciI	CCGC	2 cut(s)	940, 1100
AclI	AACGTT	1 cut(s)	1059
AclWI	GGATC	1 cut(s)	752
AcoI	YGGCCR	2 cut(s)	151, 258
AcsI	RAATTY	4 cut(s)	7, 380, 643, 784
AcuI	CTGAAG	1 cut(s)	1202
AfaI	GTAC	3 cut(s)	20, 534, 1300
AfiI	CCNNNNNNNGG	2 cut(s)	131, 1074
AgsI	TTSAA	3 cut(s)	209, 298, 613
AhlI	ACTAGT	1 cut(s)	1205
AjnI	CCWGG	2 cut(s)	1198, 1321
AlwI	GGATC	1 cut(s)	752
AlwNI	CAGNNNCTG	1 cut(s)	1168
Ama87I	CYCGRG	1 cut(s)	1103
AoxI	GGCC	6 cut(s)	117, 151, 258, 418, 1065, 1150
ApaI	GGGCCC	1 cut(s)	121
ApeKI	GCWGC	3 cut(s)	409, 1241, 1283
ApoI	RAATTY	4 cut(s)	7, 380, 643, 784
ArsI	GACNNNNNNTTYG	2 cut(s)	219, 251
Asp700I	GAANNNNTTC	1 cut(s)	875
AspA2I	CCTAGG	1 cut(s)	1337
AspS9I	GGNCC	9 cut(s)	117, 118, 197, 368, 418, 1065, 1078, 1096, 1319
AsuC2I	CCSGG	1 cut(s)	604
AsuHPI	GGTGA	6 cut(s)	67, 83, 134, 155, 240, 580
AvaI	CYCGRG	1 cut(s)	1103
AvaII	GGWCC	5 cut(s)	197, 368, 1078, 1096, 1319
AvrII	CCTAGG	1 cut(s)	1337
BaeGI	GKGCMC	2 cut(s)	121, 922
BalI	TGGCCA	1 cut(s)	260
BanI	GGYRCC	1 cut(s)	358
BanII	GRGCYC	1 cut(s)	121
BbsI	GAAGAC	1 cut(s)	822
BbvI	GCAGC	3 cut(s)	396, 1253, 1270
BceAI	ACGGC	1 cut(s)	1156
BciT130I	CCWGG	2 cut(s)	1200, 1323
BcnI	CCSGG	1 cut(s)	604
BcuI	ACTAGT	1 cut(s)	1205
BfaI	CTAG	2 cut(s)	1206, 1338
BisI	GCNGC	3 cut(s)	410, 1242, 1284
BlnI	CCTAGG	1 cut(s)	1337
BlpI	GCTNAGC	1 cut(s)	340
BlsI	GCNGC	3 cut(s)	411, 1243, 1285
Bme1390I	CCNGG	3 cut(s)	604, 1200, 1323
Bme18I	GGWCC	5 cut(s)	197, 368, 1078, 1096, 1319
BmeT110I	CYCGRG	1 cut(s)	1103
BmgT120I	GGNCC	9 cut(s)	117, 118, 197, 368, 418, 1065, 1078, 1096, 1319
BmiI	GGNNCC	9 cut(s)	119, 199, 223, 360, 419, 991, 1079, 1080, 1098
BmrFI	CCNGG	3 cut(s)	604, 1200, 1323
BpiI	GAAGAC	1 cut(s)	822
Bpu1102I	GCTNAGC	1 cut(s)	340
BpuMI	CCSGG	1 cut(s)	604
BsaJI	CCNNGG	6 cut(s)	113, 148, 217, 1198, 1322, 1337
BsaXI	ACNNNNNCTCC	6 cut(s)	206, 236, 495, 516, 525, 546
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 1074
Bse1I	ACTGG	4 cut(s)	380, 1143, 1162, 1242
BseBI	CCWGG	2 cut(s)	1200, 1323
BseDI	CCNNGG	6 cut(s)	113, 148, 217, 1198, 1322, 1337
BseGI	GGATG	5 cut(s)	185, 550, 1147, 1282, 1314
BseLI	CCNNNNNNNGG	2 cut(s)	131, 1074
BseMII	CTCAG	3 cut(s)	354, 396, 840
BseNI	ACTGG	4 cut(s)	380, 1143, 1162, 1242
BseRI	GAGGAG	4 cut(s)	23, 537, 737, 746
BseSI	GKGCMC	2 cut(s)	121, 922
BseXI	GCAGC	3 cut(s)	396, 1253, 1270
BseYI	CCCAGC	1 cut(s)	884
BshFI	GGCC	6 cut(s)	119, 153, 260, 420, 1067, 1152
BshNI	GGYRCC	1 cut(s)	358
BsiHKCI	CYCGRG	1 cut(s)	1103
BsiSI	CCGG	1 cut(s)	603
BslFI	GGGAC	4 cut(s)	32, 288, 901, 1091
BslI	CCNNNNNNNGG	2 cut(s)	131, 1074
BsmFI	GGGAC	4 cut(s)	32, 288, 901, 1091
BsmI	GAATGC	1 cut(s)	272
BsnI	GGCC	6 cut(s)	119, 153, 260, 420, 1067, 1152
BsoBI	CYCGRG	1 cut(s)	1103
Bsp120I	GGGCCC	1 cut(s)	117
Bsp1286I	GDGCHC	2 cut(s)	121, 922
Bsp143I	GATC	3 cut(s)	757, 831, 1131
Bsp1720I	GCTNAGC	1 cut(s)	340
BspACI	CCGC	2 cut(s)	940, 1100
BspANI	GGCC	6 cut(s)	119, 153, 260, 420, 1067, 1152
BspCNI	CTCAG	3 cut(s)	353, 397, 839
BspHI	TCATGA	1 cut(s)	867
BspLI	GGNNCC	9 cut(s)	119, 199, 223, 360, 419, 991, 1079, 1080, 1098
BspPI	GGATC	1 cut(s)	752
BspQI	GCTCTTC	2 cut(s)	177, 1221
BspT107I	GGYRCC	1 cut(s)	358
BsrBI	CCGCTC	1 cut(s)	1102
BsrI	ACTGG	4 cut(s)	380, 1143, 1162, 1242
BssECI	CCNNGG	6 cut(s)	113, 148, 217, 1198, 1322, 1337
BssMI	GATC	3 cut(s)	757, 831, 1131
BssT1I	CCWWGG	3 cut(s)	148, 217, 1337
Bst2UI	CCWGG	2 cut(s)	1200, 1323
Bst4CI	ACNGT	3 cut(s)	302, 537, 1303
Bst6I	CTCTTC	5 cut(s)	177, 450, 579, 740, 1221
BstC8I	GCNNGC	1 cut(s)	600
BstDEI	CTNAG	4 cut(s)	340, 405, 427, 826
BstDSI	CCRYGG	1 cut(s)	113
BstF5I	GGATG	5 cut(s)	185, 550, 1147, 1282, 1314
BstKTI	GATC	3 cut(s)	760, 834, 1134
BstMBI	GATC	3 cut(s)	757, 831, 1131
BstMWI	GCNNNNNNNGC	1 cut(s)	1238
BstNI	CCWGG	2 cut(s)	1200, 1323
BstNSI	RCATGY	1 cut(s)	403
BstSCI	CCNGG	3 cut(s)	602, 1198, 1321
BstSLI	GKGCMC	2 cut(s)	121, 922
BstV1I	GCAGC	3 cut(s)	396, 1253, 1270
BstV2I	GAAGAC	1 cut(s)	822
BsuRI	GGCC	6 cut(s)	119, 153, 260, 420, 1067, 1152
BtgI	CCRYGG	1 cut(s)	113
BtsCI	GGATG	5 cut(s)	185, 550, 1147, 1282, 1314
BtsI	GCAGTG	1 cut(s)	786
BtsIMutI	CAGTG	4 cut(s)	786, 1136, 1235, 1259
Cac8I	GCNNGC	1 cut(s)	600
CaiI	CAGNNNCTG	1 cut(s)	1168
CciI	TCATGA	1 cut(s)	867
Cfr13I	GGNCC	9 cut(s)	117, 118, 197, 368, 418, 1065, 1078, 1096, 1319
Csp6I	GTAC	3 cut(s)	19, 533, 1299
CviAII	CATG	7 cut(s)	14, 281, 355, 400, 481, 728, 868
CviQI	GTAC	3 cut(s)	19, 533, 1299
DdeI	CTNAG	4 cut(s)	340, 405, 427, 826
DpnI	GATC	3 cut(s)	759, 833, 1133
DpnII	GATC	3 cut(s)	757, 831, 1131
EaeI	YGGCCR	2 cut(s)	151, 258
Eam1104I	CTCTTC	5 cut(s)	177, 450, 579, 740, 1221
EarI	CTCTTC	5 cut(s)	177, 450, 579, 740, 1221
Eco130I	CCWWGG	3 cut(s)	148, 217, 1337
Eco24I	GRGCYC	1 cut(s)	121
Eco32I	GATATC	2 cut(s)	1018, 1329
Eco47I	GGWCC	5 cut(s)	197, 368, 1078, 1096, 1319
Eco57I	CTGAAG	1 cut(s)	1202
Eco88I	CYCGRG	1 cut(s)	1103
EcoO109I	RGGNCCY	4 cut(s)	118, 1078, 1096, 1319
EcoRII	CCWGG	2 cut(s)	1198, 1321
EcoRV	GATATC	2 cut(s)	1018, 1329
EcoT14I	CCWWGG	3 cut(s)	148, 217, 1337
EcoT38I	GRGCYC	1 cut(s)	121
ErhI	CCWWGG	3 cut(s)	148, 217, 1337
FaeI	CATG	7 cut(s)	17, 284, 358, 403, 484, 731, 871
FaqI	GGGAC	4 cut(s)	32, 288, 901, 1091
FatI	CATG	7 cut(s)	13, 280, 354, 399, 480, 727, 867
FauI	CCCGC	1 cut(s)	1107
FblI	GTMKAC	1 cut(s)	321
Fnu4HI	GCNGC	3 cut(s)	410, 1242, 1284
FokI	GGATG	5 cut(s)	172, 557, 1154, 1289, 1321
FriOI	GRGCYC	1 cut(s)	121
Fsp4HI	GCNGC	3 cut(s)	410, 1242, 1284
FspBI	CTAG	2 cut(s)	1206, 1338
GluI	GCNGC	3 cut(s)	410, 1242, 1284
GsaI	CCCAGC	1 cut(s)	888
HaeIII	GGCC	6 cut(s)	119, 153, 260, 420, 1067, 1152
HapII	CCGG	1 cut(s)	603
Hin1II	CATG	7 cut(s)	17, 284, 358, 403, 484, 731, 871
HincII	GTYRAC	1 cut(s)	1057
HindII	GTYRAC	1 cut(s)	1057
HindIII	AAGCTT	1 cut(s)	392
HinfI	GANTC	7 cut(s)	109, 156, 423, 468, 734, 977, 1010
HpaII	CCGG	1 cut(s)	603
HphI	GGTGA	6 cut(s)	67, 83, 134, 155, 240, 580
Hpy166II	GTNNAC	3 cut(s)	113, 322, 1057
Hpy188III	TCNNGA	5 cut(s)	84, 189, 295, 738, 868
Hpy8I	GTNNAC	3 cut(s)	113, 322, 1057
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	7 cut(s)	131, 301, 735, 1087, 1261, 1310, 1374
HpyCH4III	ACNGT	3 cut(s)	302, 537, 1303
HpyCH4IV	ACGT	3 cut(s)	318, 948, 1059
HpyCH4V	TGCA	4 cut(s)	399, 639, 655, 1232
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1238
HpyF3I	CTNAG	4 cut(s)	340, 405, 427, 826
HpySE526I	ACGT	3 cut(s)	318, 948, 1059
Hsp92II	CATG	7 cut(s)	17, 284, 358, 403, 484, 731, 871
KflI	GGGWCCC	1 cut(s)	1078
Kzo9I	GATC	3 cut(s)	757, 831, 1131
LguI	GCTCTTC	2 cut(s)	177, 1221
LmnI	GCTCC	4 cut(s)	227, 724, 928, 1280
Lsp1109I	GCAGC	3 cut(s)	396, 1253, 1270
MaeI	CTAG	2 cut(s)	1206, 1338
MaeII	ACGT	3 cut(s)	318, 948, 1059
MaeIII	GTNAC	2 cut(s)	686, 904
MalI	GATC	3 cut(s)	759, 833, 1133
MbiI	CCGCTC	1 cut(s)	1102
MboI	GATC	3 cut(s)	757, 831, 1131
MfeI	CAATTG	1 cut(s)	1050
MhlI	GDGCHC	2 cut(s)	121, 922
MlsI	TGGCCA	1 cut(s)	260
MluNI	TGGCCA	1 cut(s)	260
MlyI	GAGTC	2 cut(s)	118, 743
MmeI	TCCRAC	2 cut(s)	499, 1095
Mox20I	TGGCCA	1 cut(s)	260
MroXI	GAANNNNTTC	1 cut(s)	875
MscI	TGGCCA	1 cut(s)	260
MseI	TTAA	3 cut(s)	486, 675, 1227
MslI	CAYNNNNRTG	2 cut(s)	766, 872
Msp20I	TGGCCA	1 cut(s)	260
MspA1I	CMGCKG	1 cut(s)	1244
MspI	CCGG	1 cut(s)	603
MspR9I	CCNGG	3 cut(s)	604, 1200, 1323
MunI	CAATTG	1 cut(s)	1050
Mva1269I	GAATGC	1 cut(s)	272
MvaI	CCWGG	2 cut(s)	1200, 1323
MwoI	GCNNNNNNNGC	1 cut(s)	1238
NciI	CCSGG	1 cut(s)	604
NdeII	GATC	3 cut(s)	757, 831, 1131
NlaIII	CATG	7 cut(s)	17, 284, 358, 403, 484, 731, 871
NlaIV	GGNNCC	9 cut(s)	119, 199, 223, 360, 419, 991, 1079, 1080, 1098
NspI	RCATGY	1 cut(s)	403
PaeR7I	CTCGAG	1 cut(s)	1103
PagI	TCATGA	1 cut(s)	867
PciSI	GCTCTTC	2 cut(s)	177, 1221
PctI	GAATGC	1 cut(s)	272
PdmI	GAANNNNTTC	1 cut(s)	875
PfeI	GAWTC	5 cut(s)	156, 423, 468, 977, 1010
PflFI	GACNNNGTC	1 cut(s)	350
PkrI	GCNGC	3 cut(s)	411, 1243, 1285
PleI	GAGTC	2 cut(s)	117, 742
PpsI	GAGTC	2 cut(s)	117, 742
PpuMI	RGGWCCY	3 cut(s)	1078, 1096, 1319
Psp1406I	AACGTT	1 cut(s)	1059
Psp5II	RGGWCCY	3 cut(s)	1078, 1096, 1319
Psp6I	CCWGG	2 cut(s)	1198, 1321
PspFI	CCCAGC	1 cut(s)	884
PspGI	CCWGG	2 cut(s)	1198, 1321
PspN4I	GGNNCC	9 cut(s)	119, 199, 223, 360, 419, 991, 1079, 1080, 1098
PspOMI	GGGCCC	1 cut(s)	117
PspPI	GGNCC	9 cut(s)	117, 118, 197, 368, 418, 1065, 1078, 1096, 1319
PspPPI	RGGWCCY	3 cut(s)	1078, 1096, 1319
PspXI	VCTCGAGB	1 cut(s)	1103
PstNI	CAGNNNCTG	1 cut(s)	1168
PsyI	GACNNNGTC	1 cut(s)	350
PvuII	CAGCTG	1 cut(s)	1244
RsaI	GTAC	3 cut(s)	20, 534, 1300
RsaNI	GTAC	3 cut(s)	19, 533, 1299
RseI	CAYNNNNRTG	2 cut(s)	766, 872
SapI	GCTCTTC	2 cut(s)	177, 1221
SaqAI	TTAA	3 cut(s)	486, 675, 1227
SatI	GCNGC	3 cut(s)	410, 1242, 1284
Sau3AI	GATC	3 cut(s)	757, 831, 1131
Sau96I	GGNCC	9 cut(s)	117, 118, 197, 368, 418, 1065, 1078, 1096, 1319
SchI	GAGTC	2 cut(s)	118, 743
ScrFI	CCNGG	3 cut(s)	604, 1200, 1323
SduI	GDGCHC	2 cut(s)	121, 922
Sfr274I	CTCGAG	1 cut(s)	1103
SinI	GGWCC	5 cut(s)	197, 368, 1078, 1096, 1319
SlaI	CTCGAG	1 cut(s)	1103
SmiMI	CAYNNNNRTG	2 cut(s)	766, 872
SmlI	CTYRAG	1 cut(s)	1103
SmoI	CTYRAG	1 cut(s)	1103
SpeI	ACTAGT	1 cut(s)	1205
SsiI	CCGC	2 cut(s)	940, 1100
SspMI	CTAG	2 cut(s)	1206, 1338
StyD4I	CCNGG	3 cut(s)	602, 1198, 1321
StyI	CCWWGG	3 cut(s)	148, 217, 1337
TaaI	ACNGT	3 cut(s)	302, 537, 1303
TaiI	ACGT	3 cut(s)	321, 951, 1062
TaqI	TCGA	2 cut(s)	85, 1104
TaqII	GACCGA	1 cut(s)	1357
TfiI	GAWTC	5 cut(s)	156, 423, 468, 977, 1010
Tru1I	TTAA	3 cut(s)	486, 675, 1227
Tru9I	TTAA	3 cut(s)	486, 675, 1227
TscAI	CASTG	4 cut(s)	786, 1143, 1242, 1259
TseI	GCWGC	3 cut(s)	409, 1241, 1283
TspDTI	ATGAA	7 cut(s)	43, 297, 401, 469, 567, 828, 884
TspGWI	ACGGA	1 cut(s)	210
TspRI	CASTG	4 cut(s)	786, 1143, 1242, 1259
Tth111I	GACNNNGTC	1 cut(s)	350
VpaK11BI	GGWCC	5 cut(s)	197, 368, 1078, 1096, 1319
XapI	RAATTY	4 cut(s)	7, 380, 643, 784
XceI	RCATGY	1 cut(s)	403
XhoI	CTCGAG	1 cut(s)	1103
XmaJI	CCTAGG	1 cut(s)	1337
XmiI	GTMKAC	1 cut(s)	321
XmnI	GAANNNNTTC	1 cut(s)	875
XspI	CTAG	2 cut(s)	1206, 1338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.