Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004503

Physical Location & Seq

Genomic Coordinates Forward (+)

15836978 .. 15842459

Gene Structure 5482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0184000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGATCTGGGTTATCTTCTCCACCTCCTAATTCCCTCGTGGAACTCCGTCGCTATACTAGCATTCTTCTTTGCTTACCTGGCCATTGCCGGATCTATACTTCCCGGAAAACTTGTCCCCGGAGCCGTCTTACAAGATGGGTCTCGTCTTCATTATCGCTGCAATGGTCTGATATCGCTTCTGCTGCTGGCTGGGATTCTAGGGGCTGCTTCCAAGTTGGAGATCATATCACTTACTGTAATAGCAGACAGAGGACTTGAGCTGTTAGCGACCACTTTCCTGTTTAGTTTTCTGGTCACACTAGTACTTTACGCTGTTGGCTGCAAATCGAGCAACCGCAGTTCTTCCTTAAAGCCTCATCTGTCTGGGAACCTTCTAGATGACTGGTGGTTTGGAATACAGCTGAACCCTCAGTTTATGGGCATCGACCTCAAGTTTTTCTTTGTTAGAGCTGGAATGATGGGCTGGCTATTTATCAACCTTTCAATTTTCGCAAGAAGTATCCAAGAGGGCATGTTGAGTCAATCAATGGTCCTCTTCCAGTTATTCTGTGCGTTATACATTCTGGACTACTTTATTCATGAGGAGTACATGACCTCCACATGGGACATAATTGCAGAGAGATTGGGCTTCATGCTGGTATTTGGAGATCTAGTGTGGATTCCTTTCACTTTCAGTATCCAGGGCTGGTGGCTTCTGAGTAACAAGGTAGAGTTAAGAACAGCCGCTGTCATTGCAAATTGCTTCACTTTTGTGATCGGGTACCTAGTATTTAGAGGAGCCAACAAGCAAAAGCATGTTTTTAAGAAAGATCCCAAAGCGCCTATATGGGGTAAACCTCCAAGGGTCATTGGGGGAAAGTTGCTTGCTTCTGGTTATTGGGGAATTGCAAGACACTGTAATTACCTTGGGGACTTGTTACTTGCACTGTCTTTTAGTTTACCTTGTGGGATGAGTTCTCCAGTCCCATATTTCTATCCAATTTATCTTCTAATTCTGCTTATATGGAGAGAAAGAAGAGATGAAGCTCGCTGTGCCGAGAAGTATAGGGAGATCTGGGCAGAATACCGCCGACTTGTTCCATGGAGAATTTTACCCTATGTTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00830 ko00943 ko00980 ko01100 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00943 map00980 map01100 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

369

Amino Acids

42.03

Weight (kDa)

9.15

Isoelectric Point (pI)

34.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ERG4_ERG24	PF01222	10 - 369	2.7e-95	Ergosterol biosynthesis ERG4/ERG24 family
DUF1295	PF06966	207 - 315	1.4e-06	Protein of unknown function (DUF1295)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06900
fragaria_vesca	FvH4_6g22820 FvH4_6g22840
malus_domestica	MD14G1063000.v1.1
prunus_persica	Prupe.7G071900_v2.0.a1 Prupe.7G072200_v2.0.a1 Prupe.7G072300_v2.0.a1 Prupe.7G072400_v2.0.a1
pyrus_communis	pycom14g05060
rosa_chinensis	RchiOBHm_Chr3g0480431 RchiOBHm_Chr3g0480461
rosa_laevigata	RLG00000023470 RLG00000023477 RLG00000023481 RLG00000023482
rosa_multiflora	Rmu_sc0002205.1_g000025 Rmu_sc0002205.1_g000030 Rmu_sc0002205.1_g000033
rosa_roxburghii	Rroxscaffold_6G00401330 Rroxscaffold_6G00401350
rosa_rugosa	Rorug03G0184000 Rorug03G0184100 Rorug03G0184200
rosa_samantha	Rh3AG235400 Rh3AG235500 Rh3BG268300 Rh3BG268700 Rh3CG265400 Rh3DG261300 Rh3DG261400
rosa_wichuraiana	Rw3G021130 Rw3G021140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	762
AccB1I	GGYRCC	1 cut(s)	762
AciI	CCGC	3 cut(s)	337, 726, 1069
AclWI	GGATC	3 cut(s)	12, 100, 806
AcoI	YGGCCR	1 cut(s)	81
AcsI	RAATTY	1 cut(s)	1089
AfaI	GTAC	3 cut(s)	306, 590, 764
AfiI	CCNNNNNNNGG	2 cut(s)	603, 830
AgsI	TTSAA	1 cut(s)	486
AhlI	ACTAGT	1 cut(s)	301
AjnI	CCWGG	2 cut(s)	78, 681
AleI	CACNNNNGTG	1 cut(s)	752
AluBI	AGCT	4 cut(s)	262, 403, 452, 1028
AluI	AGCT	4 cut(s)	262, 403, 452, 1028
Alw26I	GTCTC	1 cut(s)	147
AlwI	GGATC	3 cut(s)	12, 100, 806
AlwNI	CAGNNNCTG	1 cut(s)	728
AoxI	GGCC	1 cut(s)	81
ApeKI	GCWGC	4 cut(s)	159, 184, 206, 321
ApoI	RAATTY	1 cut(s)	1089
ArsI	GACNNNNNNTTYG	2 cut(s)	374, 406
Asp718I	GGTACC	1 cut(s)	762
AspLEI	GCGC	1 cut(s)	823
AspS9I	GGNCC	1 cut(s)	532
AsuC2I	CCSGG	2 cut(s)	105, 120
AvaII	GGWCC	1 cut(s)	532
BalI	TGGCCA	1 cut(s)	83
BanI	GGYRCC	1 cut(s)	762
BauI	CACGAG	1 cut(s)	37
BbsI	GAAGAC	1 cut(s)	140
BbvI	GCAGC	4 cut(s)	146, 171, 193, 308
BccI	CCATC	2 cut(s)	131, 454
BceAI	ACGGC	1 cut(s)	110
BciT130I	CCWGG	2 cut(s)	80, 683
BciVI	GTATCC	2 cut(s)	512, 689
BcnI	CCSGG	2 cut(s)	105, 120
BcoDI	GTCTC	1 cut(s)	147
BcuI	ACTAGT	1 cut(s)	301
BfaI	CTAG	6 cut(s)	59, 200, 302, 377, 653, 767
BfoI	RGCGCY	1 cut(s)	824
BfuI	GTATCC	2 cut(s)	512, 689
BglII	AGATCT	2 cut(s)	649, 1053
BisI	GCNGC	5 cut(s)	160, 185, 207, 322, 726
BlsI	GCNGC	5 cut(s)	161, 186, 208, 323, 727
BmcAI	AGTACT	1 cut(s)	306
Bme1390I	CCNGG	4 cut(s)	80, 105, 120, 683
Bme18I	GGWCC	1 cut(s)	532
BmgT120I	GGNCC	1 cut(s)	532
BmiI	GGNNCC	4 cut(s)	124, 371, 764, 781
BmrFI	CCNGG	4 cut(s)	80, 105, 120, 683
BmsI	GCATC	1 cut(s)	432
BpiI	GAAGAC	1 cut(s)	140
BpmI	CTGGAG	1 cut(s)	945
BpuEI	CTTGAG	2 cut(s)	278, 416
BpuMI	CCSGG	2 cut(s)	105, 120
BsaI	GGTCTC	1 cut(s)	147
BsaJI	CCNNGG	5 cut(s)	118, 682, 842, 907, 1082
BsaXI	ACNNNNNCTCC	4 cut(s)	581, 611, 639, 669
Bsc4I	CCNNNNNNNGG	2 cut(s)	603, 830
Bse1I	ACTGG	3 cut(s)	389, 541, 962
Bse3DI	GCAATG	3 cut(s)	84, 169, 732
BseBI	CCWGG	2 cut(s)	80, 683
BseDI	CCNNGG	5 cut(s)	118, 682, 842, 907, 1082
BseGI	GGATG	1 cut(s)	957
BseLI	CCNNNNNNNGG	2 cut(s)	603, 830
BseMI	GCAATG	3 cut(s)	84, 169, 732
BseMII	CTCAG	2 cut(s)	425, 689
BseNI	ACTGG	3 cut(s)	389, 541, 962
BseRI	GAGGAG	2 cut(s)	599, 792
BseXI	GCAGC	4 cut(s)	146, 171, 193, 308
BseYI	CCCAGC	1 cut(s)	191
BshFI	GGCC	1 cut(s)	83
BshNI	GGYRCC	1 cut(s)	762
BsiSI	CCGG	3 cut(s)	90, 105, 120
BslFI	GGGAC	4 cut(s)	101, 620, 926, 950
BslI	CCNNNNNNNGG	2 cut(s)	603, 830
BsmAI	GTCTC	1 cut(s)	147
BsmFI	GGGAC	4 cut(s)	101, 620, 926, 950
BsmI	GAATGC	1 cut(s)	62
BsnI	GGCC	1 cut(s)	83
Bso31I	GGTCTC	1 cut(s)	147
Bsp143I	GATC	7 cut(s)	4, 92, 222, 649, 756, 811, 1053
Bsp19I	CCATGG	1 cut(s)	1082
BspACI	CCGC	3 cut(s)	337, 726, 1069
BspANI	GGCC	1 cut(s)	83
BspCNI	CTCAG	2 cut(s)	424, 690
BspHI	TCATGA	1 cut(s)	580
BspLI	GGNNCC	4 cut(s)	124, 371, 764, 781
BspPI	GGATC	3 cut(s)	12, 100, 806
BspT107I	GGYRCC	1 cut(s)	762
BspTNI	GGTCTC	1 cut(s)	147
BsrDI	GCAATG	3 cut(s)	84, 169, 732
BsrI	ACTGG	3 cut(s)	389, 541, 962
BssECI	CCNNGG	5 cut(s)	118, 682, 842, 907, 1082
BssMI	GATC	7 cut(s)	4, 92, 222, 649, 756, 811, 1053
BssSI	CACGAG	1 cut(s)	37
BssT1I	CCWWGG	3 cut(s)	842, 907, 1082
Bst2BI	CACGAG	1 cut(s)	37
Bst2UI	CCWGG	2 cut(s)	80, 683
Bst4CI	ACNGT	3 cut(s)	238, 899, 930
Bst6I	CTCTTC	2 cut(s)	542, 1012
BstC8I	GCNNGC	4 cut(s)	189, 467, 867, 1030
BstDEI	CTNAG	2 cut(s)	411, 698
BstDSI	CCRYGG	1 cut(s)	1082
BstF5I	GGATG	1 cut(s)	957
BstH2I	RGCGCY	1 cut(s)	824
BstHHI	GCGC	1 cut(s)	823
BstKTI	GATC	7 cut(s)	7, 95, 225, 652, 759, 814, 1056
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	7 cut(s)	4, 92, 222, 649, 756, 811, 1053
BstMWI	GCNNNNNNNGC	6 cut(s)	59, 80, 184, 330, 734, 1034
BstNI	CCWGG	2 cut(s)	80, 683
BstNSI	RCATGY	2 cut(s)	517, 800
BstSCI	CCNGG	4 cut(s)	78, 103, 118, 681
BstV1I	GCAGC	4 cut(s)	146, 171, 193, 308
BstV2I	GAAGAC	1 cut(s)	140
BstX2I	RGATCY	5 cut(s)	4, 92, 649, 811, 1053
BstYI	RGATCY	5 cut(s)	4, 92, 649, 811, 1053
BsuI	GTATCC	2 cut(s)	512, 689
BsuRI	GGCC	1 cut(s)	83
BtgI	CCRYGG	1 cut(s)	1082
BtsCI	GGATG	1 cut(s)	957
BtsIMutI	CAGTG	2 cut(s)	895, 926
Cac8I	GCNNGC	4 cut(s)	189, 467, 867, 1030
CaiI	CAGNNNCTG	1 cut(s)	728
CciI	TCATGA	1 cut(s)	580
CfoI	GCGC	1 cut(s)	823
Cfr13I	GGNCC	1 cut(s)	532
Csp6I	GTAC	3 cut(s)	305, 589, 763
CviAII	CATG	7 cut(s)	514, 581, 592, 603, 634, 797, 1083
CviQI	GTAC	3 cut(s)	305, 589, 763
DdeI	CTNAG	2 cut(s)	411, 698
DpnI	GATC	7 cut(s)	6, 94, 224, 651, 758, 813, 1055
DpnII	GATC	7 cut(s)	4, 92, 222, 649, 756, 811, 1053
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	2 cut(s)	542, 1012
EarI	CTCTTC	2 cut(s)	542, 1012
Eco130I	CCWWGG	3 cut(s)	842, 907, 1082
Eco31I	GGTCTC	1 cut(s)	147
Eco32I	GATATC	1 cut(s)	174
Eco47I	GGWCC	1 cut(s)	532
EcoRII	CCWGG	2 cut(s)	78, 681
EcoRV	GATATC	1 cut(s)	174
EcoT14I	CCWWGG	3 cut(s)	842, 907, 1082
ErhI	CCWWGG	3 cut(s)	842, 907, 1082
FaeI	CATG	7 cut(s)	517, 584, 595, 606, 637, 800, 1086
FalI	AAGNNNNNCTT	2 cut(s)	425, 457
FaqI	GGGAC	4 cut(s)	101, 620, 926, 950
FatI	CATG	7 cut(s)	513, 580, 591, 602, 633, 796, 1082
Fnu4HI	GCNGC	5 cut(s)	160, 185, 207, 322, 726
FokI	GGATG	1 cut(s)	964
Fsp4HI	GCNGC	5 cut(s)	160, 185, 207, 322, 726
FspBI	CTAG	6 cut(s)	59, 200, 302, 377, 653, 767
GlaI	GCGC	1 cut(s)	822
GluI	GCNGC	5 cut(s)	160, 185, 207, 322, 726
GsaI	CCCAGC	1 cut(s)	195
GsuI	CTGGAG	1 cut(s)	945
HaeII	RGCGCY	1 cut(s)	824
HaeIII	GGCC	1 cut(s)	83
HapII	CCGG	3 cut(s)	90, 105, 120
HhaI	GCGC	1 cut(s)	823
Hin1II	CATG	7 cut(s)	517, 584, 595, 606, 637, 800, 1086
Hin6I	GCGC	1 cut(s)	821
HinP1I	GCGC	1 cut(s)	821
HinfI	GANTC	3 cut(s)	196, 520, 661
HpaII	CCGG	3 cut(s)	90, 105, 120
Hpy166II	GTNNAC	2 cut(s)	836, 941
Hpy188I	TCNGA	2 cut(s)	171, 699
Hpy188III	TCNNGA	3 cut(s)	377, 566, 581
Hpy8I	GTNNAC	2 cut(s)	836, 941
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	1 cut(s)	383
HpyCH4III	ACNGT	3 cut(s)	238, 899, 930
HpyCH4V	TGCA	6 cut(s)	162, 324, 617, 737, 890, 926
HpyF10VI	GCNNNNNNNGC	6 cut(s)	59, 80, 184, 330, 734, 1034
HpyF3I	CTNAG	2 cut(s)	411, 698
Hsp92II	CATG	7 cut(s)	517, 584, 595, 606, 637, 800, 1086
HspAI	GCGC	1 cut(s)	821
KpnI	GGTACC	1 cut(s)	766
Kzo9I	GATC	7 cut(s)	4, 92, 222, 649, 756, 811, 1053
LmnI	GCTCC	2 cut(s)	122, 779
Lsp1109I	GCAGC	4 cut(s)	146, 171, 193, 308
LweI	GCATC	1 cut(s)	432
MaeI	CTAG	6 cut(s)	59, 200, 302, 377, 653, 767
MaeIII	GTNAC	3 cut(s)	295, 701, 918
MalI	GATC	7 cut(s)	6, 94, 224, 651, 758, 813, 1055
MboI	GATC	7 cut(s)	4, 92, 222, 649, 756, 811, 1053
MboII	GAAGA	7 cut(s)	8, 58, 140, 336, 529, 980, 1029
MflI	RGATCY	5 cut(s)	4, 92, 649, 811, 1053
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	9 cut(s)	30, 486, 612, 739, 885, 901, 981, 993, 1089
MluNI	TGGCCA	1 cut(s)	83
MlyI	GAGTC	1 cut(s)	529
MmeI	TCCRAC	1 cut(s)	198
Mox20I	TGGCCA	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	4 cut(s)	350, 716, 804, 1108
MslI	CAYNNNNRTG	1 cut(s)	752
Msp20I	TGGCCA	1 cut(s)	83
MspA1I	CMGCKG	2 cut(s)	403, 728
MspI	CCGG	3 cut(s)	90, 105, 120
MspR9I	CCNGG	4 cut(s)	80, 105, 120, 683
Mva1269I	GAATGC	1 cut(s)	62
MvaI	CCWGG	2 cut(s)	80, 683
MwoI	GCNNNNNNNGC	6 cut(s)	59, 80, 184, 330, 734, 1034
NciI	CCSGG	2 cut(s)	105, 120
NcoI	CCATGG	1 cut(s)	1082
NdeII	GATC	7 cut(s)	4, 92, 222, 649, 756, 811, 1053
NlaIII	CATG	7 cut(s)	517, 584, 595, 606, 637, 800, 1086
NlaIV	GGNNCC	4 cut(s)	124, 371, 764, 781
NmeAIII	GCCGAG	1 cut(s)	1063
NmuCI	GTSAC	1 cut(s)	295
NspI	RCATGY	2 cut(s)	517, 800
OliI	CACNNNNGTG	1 cut(s)	752
PagI	TCATGA	1 cut(s)	580
PctI	GAATGC	1 cut(s)	62
PfeI	GAWTC	2 cut(s)	196, 661
PfoI	TCCNGGA	1 cut(s)	103
PkrI	GCNGC	5 cut(s)	161, 186, 208, 323, 727
PleI	GAGTC	1 cut(s)	528
PpsI	GAGTC	1 cut(s)	528
Psp6I	CCWGG	2 cut(s)	78, 681
PspFI	CCCAGC	1 cut(s)	191
PspGI	CCWGG	2 cut(s)	78, 681
PspN4I	GGNNCC	4 cut(s)	124, 371, 764, 781
PspPI	GGNCC	1 cut(s)	532
PstNI	CAGNNNCTG	1 cut(s)	728
PsuI	RGATCY	5 cut(s)	4, 92, 649, 811, 1053
PvuII	CAGCTG	1 cut(s)	403
RsaI	GTAC	3 cut(s)	306, 590, 764
RsaNI	GTAC	3 cut(s)	305, 589, 763
RseI	CAYNNNNRTG	1 cut(s)	752
SaqAI	TTAA	4 cut(s)	350, 716, 804, 1108
SatI	GCNGC	5 cut(s)	160, 185, 207, 322, 726
Sau3AI	GATC	7 cut(s)	4, 92, 222, 649, 756, 811, 1053
Sau96I	GGNCC	1 cut(s)	532
ScaI	AGTACT	1 cut(s)	306
SchI	GAGTC	1 cut(s)	529
ScrFI	CCNGG	4 cut(s)	80, 105, 120, 683
SfaNI	GCATC	1 cut(s)	432
SinI	GGWCC	1 cut(s)	532
SmiMI	CAYNNNNRTG	1 cut(s)	752
SmlI	CTYRAG	2 cut(s)	257, 431
SmoI	CTYRAG	2 cut(s)	257, 431
SpeI	ACTAGT	1 cut(s)	301
Sse9I	AATT	9 cut(s)	30, 486, 612, 739, 885, 901, 981, 993, 1089
SsiI	CCGC	3 cut(s)	337, 726, 1069
SspMI	CTAG	6 cut(s)	59, 200, 302, 377, 653, 767
StyD4I	CCNGG	4 cut(s)	78, 103, 118, 681
StyI	CCWWGG	3 cut(s)	842, 907, 1082
TaaI	ACNGT	3 cut(s)	238, 899, 930
TaqI	TCGA	2 cut(s)	329, 426
TasI	AATT	9 cut(s)	30, 486, 612, 739, 885, 901, 981, 993, 1089
TatI	WGTACW	2 cut(s)	304, 588
TauI	GCSGC	1 cut(s)	728
TfiI	GAWTC	2 cut(s)	196, 661
Tru1I	TTAA	4 cut(s)	350, 716, 804, 1108
Tru9I	TTAA	4 cut(s)	350, 716, 804, 1108
TscAI	CASTG	2 cut(s)	902, 933
TseFI	GTSAC	1 cut(s)	295
TseI	GCWGC	4 cut(s)	159, 184, 206, 321
Tsp45I	GTSAC	1 cut(s)	295
TspDTI	ATGAA	4 cut(s)	140, 569, 622, 1038
TspGWI	ACGGA	1 cut(s)	37
TspRI	CASTG	2 cut(s)	902, 933
VpaK11BI	GGWCC	1 cut(s)	532
XapI	RAATTY	1 cut(s)	1089
XbaI	TCTAGA	1 cut(s)	376
XceI	RCATGY	2 cut(s)	517, 800
XspI	CTAG	6 cut(s)	59, 200, 302, 377, 653, 767
ZrmI	AGTACT	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.