Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0004503

Physical Location & Seq

Genomic Coordinates Forward (+)

24391955 .. 24392767

Gene Structure 813 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023477

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGTTAGCCCAATTTCGGACCAATTCTAGCCTTCCACCAAGTCCAATGGCAGTACCAATCATTGGACACCTTCACCTCCTTGCCCCAATACCTCACCAAGCTCTTCACAAGCTATCAAACCGCCTTGGACCACTAGTTCACATCTTTCTTTGTTCTGTCCCTTGTATAGTTGTTTCCTCCCCAGAAATGGCGAAAGAGTTTCTCAAGACTCATGAAGCTTCCTTCTCCAACAGACCACACATATCTGCTGTTGATTATCTCACATATGGACGAAAAGGGGCTGATGAGGGATTTGGGAAAAGGCTTAAGGAAGTGTGTGATCAATTCGACACTATGATGCAGAGGATCATAAAGGAGCACCAAGAGGCGCGAAAGAAGGAGGAAGTGGGTGAAAGTGATGATGATGTTAAAGATTTGTTGACATTTTACTTGATATATCTGAAGACGACACTACTACAATATGGGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00830 ko00943 ko00980 ko01100 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00943 map00980 map01100 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

157

Amino Acids

17.64

Weight (kDa)

7.09

Isoelectric Point (pI)

35.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	12 - 93	2.4e-11	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06900
fragaria_vesca	FvH4_6g22820 FvH4_6g22840
malus_domestica	MD14G1063000.v1.1
prunus_persica	Prupe.7G071900_v2.0.a1 Prupe.7G072200_v2.0.a1 Prupe.7G072300_v2.0.a1 Prupe.7G072400_v2.0.a1
pyrus_communis	pycom14g05060
rosa_chinensis	RchiOBHm_Chr3g0480431 RchiOBHm_Chr3g0480461
rosa_laevigata	RLG00000023470 RLG00000023477 RLG00000023481 RLG00000023482
rosa_multiflora	Rmu_sc0002205.1_g000025 Rmu_sc0002205.1_g000030 Rmu_sc0002205.1_g000033
rosa_roxburghii	Rroxscaffold_6G00401330 Rroxscaffold_6G00401350
rosa_rugosa	Rorug03G0184000 Rorug03G0184100 Rorug03G0184200
rosa_samantha	Rh3AG235400 Rh3AG235500 Rh3BG268300 Rh3BG268700 Rh3CG265400 Rh3DG261300 Rh3DG261400
rosa_wichuraiana	Rw3G021130 Rw3G021140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	62
AccII	CGCG	1 cut(s)	370
AciI	CCGC	1 cut(s)	121
AclWI	GGATC	1 cut(s)	353
AcuI	CTGAAG	1 cut(s)	461
AfaI	GTAC	1 cut(s)	54
AfiI	CCNNNNNNNGG	3 cut(s)	15, 62, 187
AflII	CTTAAG	1 cut(s)	305
AhlI	ACTAGT	1 cut(s)	133
AloI	GAACNNNNNNTCC	2 cut(s)	120, 152
AluBI	AGCT	3 cut(s)	101, 112, 218
AluI	AGCT	3 cut(s)	101, 112, 218
Alw21I	GWGCWC	1 cut(s)	360
AlwI	GGATC	1 cut(s)	353
AoxI	GGCC	1 cut(s)	464
AspLEI	GCGC	1 cut(s)	370
AspS9I	GGNCC	3 cut(s)	18, 128, 464
AsuHPI	GGTGA	3 cut(s)	65, 86, 401
AvaII	GGWCC	2 cut(s)	18, 128
BbsI	GAAGAC	1 cut(s)	449
Bbv12I	GWGCWC	1 cut(s)	360
BclI	TGATCA	1 cut(s)	319
BcuI	ACTAGT	1 cut(s)	133
BfaI	CTAG	2 cut(s)	27, 134
BfrI	CTTAAG	1 cut(s)	305
Bme18I	GGWCC	2 cut(s)	18, 128
BmgT120I	GGNCC	3 cut(s)	18, 128, 464
BmsI	GCATC	1 cut(s)	327
BpiI	GAAGAC	1 cut(s)	449
BpuEI	CTTGAG	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	124
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 62, 187
BseDI	CCNNGG	1 cut(s)	124
BseLI	CCNNNNNNNGG	3 cut(s)	15, 62, 187
Bsh1236I	CGCG	1 cut(s)	370
BshFI	GGCC	1 cut(s)	466
BsiHKAI	GWGCWC	1 cut(s)	360
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	3 cut(s)	15, 62, 187
BsmFI	GGGAC	1 cut(s)	143
BsnI	GGCC	1 cut(s)	466
Bsp1286I	GDGCHC	1 cut(s)	360
Bsp143I	GATC	2 cut(s)	319, 345
BspACI	CCGC	1 cut(s)	121
BspANI	GGCC	1 cut(s)	466
BspFNI	CGCG	1 cut(s)	370
BspHI	TCATGA	1 cut(s)	211
BspPI	GGATC	1 cut(s)	353
BspQI	GCTCTTC	1 cut(s)	108
BspTI	CTTAAG	1 cut(s)	305
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	2 cut(s)	319, 345
BssT1I	CCWWGG	1 cut(s)	124
Bst6I	CTCTTC	1 cut(s)	108
BstAFI	CTTAAG	1 cut(s)	305
BstFNI	CGCG	1 cut(s)	370
BstHHI	GCGC	1 cut(s)	370
BstKTI	GATC	2 cut(s)	322, 348
BstMBI	GATC	2 cut(s)	319, 345
BstUI	CGCG	1 cut(s)	370
BstV2I	GAAGAC	1 cut(s)	449
BsuRI	GGCC	1 cut(s)	466
CciI	TCATGA	1 cut(s)	211
CfoI	GCGC	1 cut(s)	370
Cfr13I	GGNCC	3 cut(s)	18, 128, 464
Csp6I	GTAC	1 cut(s)	53
CviAII	CATG	1 cut(s)	212
CviJI	RGCY	8 cut(s)	8, 30, 101, 112, 218, 281, 304, 466
CviKI_1	RGCY	8 cut(s)	8, 30, 101, 112, 218, 281, 304, 466
CviQI	GTAC	1 cut(s)	53
DpnI	GATC	2 cut(s)	321, 347
DpnII	GATC	2 cut(s)	319, 345
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	124
Eco47I	GGWCC	2 cut(s)	18, 128
Eco57I	CTGAAG	1 cut(s)	461
EcoT14I	CCWWGG	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	124
FaeI	CATG	1 cut(s)	215
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	1 cut(s)	211
FauNDI	CATATG	1 cut(s)	265
FbaI	TGATCA	1 cut(s)	319
FspBI	CTAG	2 cut(s)	27, 134
GlaI	GCGC	1 cut(s)	369
HaeIII	GGCC	1 cut(s)	466
HhaI	GCGC	1 cut(s)	370
Hin1II	CATG	1 cut(s)	215
Hin6I	GCGC	1 cut(s)	368
HinP1I	GCGC	1 cut(s)	368
HincII	GTYRAC	1 cut(s)	420
HindII	GTYRAC	1 cut(s)	420
HindIII	AAGCTT	1 cut(s)	216
HinfI	GANTC	1 cut(s)	208
HphI	GGTGA	3 cut(s)	65, 86, 401
Hpy166II	GTNNAC	2 cut(s)	139, 420
Hpy188I	TCNGA	2 cut(s)	18, 441
Hpy188III	TCNNGA	2 cut(s)	205, 212
Hpy8I	GTNNAC	2 cut(s)	139, 420
HpyAV	CCTTC	4 cut(s)	41, 80, 232, 370
HpyCH4V	TGCA	1 cut(s)	340
Hsp92II	CATG	1 cut(s)	215
HspAI	GCGC	1 cut(s)	368
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	2 cut(s)	319, 345
LguI	GCTCTTC	1 cut(s)	108
LmnI	GCTCC	1 cut(s)	355
LpnPI	CCDG	1 cut(s)	195
LweI	GCATC	1 cut(s)	327
MaeI	CTAG	2 cut(s)	27, 134
MalI	GATC	2 cut(s)	321, 347
MboI	GATC	2 cut(s)	319, 345
MboII	GAAGA	2 cut(s)	95, 454
MhlI	GDGCHC	1 cut(s)	360
MluCI	AATT	3 cut(s)	11, 22, 323
MlyI	GAGTC	1 cut(s)	202
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	7 cut(s)	86, 102, 187, 280, 336, 358, 373
MseI	TTAA	2 cut(s)	306, 408
MslI	CAYNNNNRTG	1 cut(s)	335
MspCI	CTTAAG	1 cut(s)	305
MvnI	CGCG	1 cut(s)	370
NdeI	CATATG	1 cut(s)	265
NdeII	GATC	2 cut(s)	319, 345
NlaIII	CATG	1 cut(s)	215
PagI	TCATGA	1 cut(s)	211
PciSI	GCTCTTC	1 cut(s)	108
PflMI	CCANNNNNTGG	1 cut(s)	62
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
PspPI	GGNCC	3 cut(s)	18, 128, 464
RsaI	GTAC	1 cut(s)	54
RsaNI	GTAC	1 cut(s)	53
RseI	CAYNNNNRTG	1 cut(s)	335
SapI	GCTCTTC	1 cut(s)	108
SaqAI	TTAA	2 cut(s)	306, 408
Sau3AI	GATC	2 cut(s)	319, 345
Sau96I	GGNCC	3 cut(s)	18, 128, 464
SchI	GAGTC	1 cut(s)	202
SduI	GDGCHC	1 cut(s)	360
SetI	ASST	6 cut(s)	72, 78, 94, 103, 114, 220
SfaNI	GCATC	1 cut(s)	327
SinI	GGWCC	2 cut(s)	18, 128
SmiMI	CAYNNNNRTG	1 cut(s)	335
SmlI	CTYRAG	2 cut(s)	203, 305
SmoI	CTYRAG	2 cut(s)	203, 305
SpeI	ACTAGT	1 cut(s)	133
Sse9I	AATT	3 cut(s)	11, 22, 323
SsiI	CCGC	1 cut(s)	121
SspMI	CTAG	2 cut(s)	27, 134
StyI	CCWWGG	1 cut(s)	124
TaqI	TCGA	1 cut(s)	327
TasI	AATT	3 cut(s)	11, 22, 323
Tru1I	TTAA	2 cut(s)	306, 408
Tru9I	TTAA	2 cut(s)	306, 408
TspDTI	ATGAA	1 cut(s)	228
Van91I	CCANNNNNTGG	1 cut(s)	62
Vha464I	CTTAAG	1 cut(s)	305
VpaK11BI	GGWCC	2 cut(s)	18, 128
XspI	CTAG	2 cut(s)	27, 134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.