transcription factor
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 410 |
| Acc16I | TGCGCA | 1 cut(s) | 414 |
| Acc36I | ACCTGC | 2 cut(s) | 410, 666 |
| AccBSI | CCGCTC | 1 cut(s) | 744 |
| AciI | CCGC | 3 cut(s) | 226, 744, 841 |
| AclWI | GGATC | 1 cut(s) | 138 |
| AcoI | YGGCCR | 1 cut(s) | 798 |
| AcuI | CTGAAG | 1 cut(s) | 702 |
| AcvI | CACGTG | 1 cut(s) | 914 |
| AcyI | GRCGYC | 1 cut(s) | 279 |
| AfaI | GTAC | 1 cut(s) | 823 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 62, 118 |
| AgsI | TTSAA | 2 cut(s) | 232, 759 |
| AhlI | ACTAGT | 1 cut(s) | 79 |
| AjnI | CCWGG | 2 cut(s) | 303, 843 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 739, 771 |
| Alw21I | GWGCWC | 3 cut(s) | 79, 919, 958 |
| Alw26I | GTCTC | 6 cut(s) | 34, 294, 628, 699, 853, 895 |
| AlwI | GGATC | 1 cut(s) | 138 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 256 |
| AoxI | GGCC | 2 cut(s) | 306, 798 |
| ApeKI | GCWGC | 6 cut(s) | 92, 170, 211, 256, 497, 673 |
| AspLEI | GCGC | 1 cut(s) | 415 |
| AspS9I | GGNCC | 1 cut(s) | 307 |
| AsuHPI | GGTGA | 1 cut(s) | 434 |
| AsuII | TTCGAA | 1 cut(s) | 436 |
| BalI | TGGCCA | 1 cut(s) | 800 |
| BanII | GRGCYC | 1 cut(s) | 958 |
| BbrPI | CACGTG | 1 cut(s) | 914 |
| BbsI | GAAGAC | 1 cut(s) | 274 |
| Bbv12I | GWGCWC | 3 cut(s) | 79, 919, 958 |
| BbvCI | CCTCAGC | 1 cut(s) | 395 |
| BbvI | GCAGC | 6 cut(s) | 79, 182, 223, 243, 509, 685 |
| BccI | CCATC | 6 cut(s) | 121, 443, 451, 637, 697, 790 |
| BceAI | ACGGC | 1 cut(s) | 962 |
| BciT130I | CCWGG | 2 cut(s) | 305, 845 |
| BcoDI | GTCTC | 6 cut(s) | 34, 294, 628, 699, 853, 895 |
| BcuI | ACTAGT | 1 cut(s) | 79 |
| BfaI | CTAG | 3 cut(s) | 80, 215, 725 |
| BfuAI | ACCTGC | 2 cut(s) | 410, 666 |
| BisI | GCNGC | 7 cut(s) | 93, 171, 212, 226, 257, 498, 674 |
| BlsI | GCNGC | 7 cut(s) | 94, 172, 213, 227, 258, 499, 675 |
| Bme1390I | CCNGG | 2 cut(s) | 305, 845 |
| BmgT120I | GGNCC | 1 cut(s) | 307 |
| BmiI | GGNNCC | 1 cut(s) | 621 |
| BmrFI | CCNGG | 2 cut(s) | 305, 845 |
| BmsI | GCATC | 2 cut(s) | 334, 676 |
| BpiI | GAAGAC | 1 cut(s) | 274 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 388, 420, 733, 765 |
| Bpu10I | CCTNAGC | 1 cut(s) | 395 |
| Bpu14I | TTCGAA | 1 cut(s) | 436 |
| BpuEI | CTTGAG | 2 cut(s) | 266, 681 |
| BsaAI | YACGTR | 1 cut(s) | 914 |
| BsaHI | GRCGYC | 1 cut(s) | 279 |
| BsaI | GGTCTC | 1 cut(s) | 294 |
| BsaJI | CCNNGG | 1 cut(s) | 801 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 66, 96 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 62, 118 |
| Bse1I | ACTGG | 2 cut(s) | 12, 322 |
| Bse3DI | GCAATG | 3 cut(s) | 499, 813, 869 |
| BseBI | CCWGG | 2 cut(s) | 305, 845 |
| BseDI | CCNNGG | 1 cut(s) | 801 |
| BseGI | GGATG | 3 cut(s) | 52, 584, 708 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 62, 118 |
| BseMI | GCAATG | 3 cut(s) | 499, 813, 869 |
| BseMII | CTCAG | 3 cut(s) | 386, 420, 540 |
| BseNI | ACTGG | 2 cut(s) | 12, 322 |
| BseRI | GAGGAG | 1 cut(s) | 485 |
| BseXI | GCAGC | 6 cut(s) | 79, 182, 223, 243, 509, 685 |
| BseYI | CCCAGC | 1 cut(s) | 240 |
| Bsh1285I | CGRYCG | 1 cut(s) | 116 |
| BshFI | GGCC | 2 cut(s) | 308, 800 |
| BsiEI | CGRYCG | 1 cut(s) | 116 |
| BsiHKAI | GWGCWC | 3 cut(s) | 79, 919, 958 |
| BslFI | GGGAC | 1 cut(s) | 760 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 62, 118 |
| BsmAI | GTCTC | 6 cut(s) | 34, 294, 628, 699, 853, 895 |
| BsmFI | GGGAC | 1 cut(s) | 760 |
| BsmI | GAATGC | 1 cut(s) | 415 |
| BsnI | GGCC | 2 cut(s) | 308, 800 |
| Bso31I | GGTCTC | 1 cut(s) | 294 |
| Bsp119I | TTCGAA | 1 cut(s) | 436 |
| Bsp1286I | GDGCHC | 3 cut(s) | 79, 919, 958 |
| Bsp143I | GATC | 4 cut(s) | 49, 58, 113, 130 |
| Bsp19I | CCATGG | 1 cut(s) | 801 |
| BspACI | CCGC | 3 cut(s) | 226, 744, 841 |
| BspANI | GGCC | 2 cut(s) | 308, 800 |
| BspCNI | CTCAG | 3 cut(s) | 387, 421, 541 |
| BspLI | GGNNCC | 1 cut(s) | 621 |
| BspMI | ACCTGC | 2 cut(s) | 410, 666 |
| BspPI | GGATC | 1 cut(s) | 138 |
| BspT104I | TTCGAA | 1 cut(s) | 436 |
| BspTNI | GGTCTC | 1 cut(s) | 294 |
| BsrBI | CCGCTC | 1 cut(s) | 744 |
| BsrDI | GCAATG | 3 cut(s) | 499, 813, 869 |
| BsrI | ACTGG | 2 cut(s) | 12, 322 |
| BssECI | CCNNGG | 1 cut(s) | 801 |
| BssMI | GATC | 4 cut(s) | 49, 58, 113, 130 |
| BssNI | GRCGYC | 1 cut(s) | 279 |
| BssT1I | CCWWGG | 1 cut(s) | 801 |
| Bst2UI | CCWGG | 2 cut(s) | 305, 845 |
| Bst4CI | ACNGT | 5 cut(s) | 164, 360, 639, 720, 906 |
| Bst6I | CTCTTC | 1 cut(s) | 147 |
| BstACI | GRCGYC | 1 cut(s) | 279 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 256 |
| BstBAI | YACGTR | 1 cut(s) | 914 |
| BstBI | TTCGAA | 1 cut(s) | 436 |
| BstC8I | GCNNGC | 5 cut(s) | 153, 417, 678, 781, 975 |
| BstDEI | CTNAG | 5 cut(s) | 395, 429, 501, 549, 959 |
| BstDSI | CCRYGG | 1 cut(s) | 801 |
| BstF5I | GGATG | 3 cut(s) | 52, 584, 708 |
| BstHHI | GCGC | 1 cut(s) | 415 |
| BstKTI | GATC | 4 cut(s) | 52, 61, 116, 133 |
| BstMAI | GTCTC | 6 cut(s) | 34, 294, 628, 699, 853, 895 |
| BstMBI | GATC | 4 cut(s) | 49, 58, 113, 130 |
| BstMCI | CGRYCG | 1 cut(s) | 116 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 256, 344, 410, 686, 923 |
| BstNI | CCWGG | 2 cut(s) | 305, 845 |
| BstNSI | RCATGY | 2 cut(s) | 419, 535 |
| BstSCI | CCNGG | 2 cut(s) | 303, 843 |
| BstV1I | GCAGC | 6 cut(s) | 79, 182, 223, 243, 509, 685 |
| BstV2I | GAAGAC | 1 cut(s) | 274 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 317, 808 |
| BsuRI | GGCC | 2 cut(s) | 308, 800 |
| BtgI | CCRYGG | 1 cut(s) | 801 |
| BtgZI | GCGATG | 1 cut(s) | 654 |
| BtsCI | GGATG | 3 cut(s) | 52, 584, 708 |
| BveI | ACCTGC | 2 cut(s) | 410, 666 |
| Cac8I | GCNNGC | 5 cut(s) | 153, 417, 678, 781, 975 |
| CaiI | CAGNNNCTG | 1 cut(s) | 256 |
| CfoI | GCGC | 1 cut(s) | 415 |
| Cfr13I | GGNCC | 1 cut(s) | 307 |
| CseI | GACGC | 1 cut(s) | 268 |
| Csp6I | GTAC | 1 cut(s) | 822 |
| CviAII | CATG | 4 cut(s) | 416, 532, 787, 802 |
| CviQI | GTAC | 1 cut(s) | 822 |
| DdeI | CTNAG | 5 cut(s) | 395, 429, 501, 549, 959 |
| DpnI | GATC | 4 cut(s) | 51, 60, 115, 132 |
| DpnII | GATC | 4 cut(s) | 49, 58, 113, 130 |
| EaeI | YGGCCR | 1 cut(s) | 798 |
| Eam1104I | CTCTTC | 1 cut(s) | 147 |
| EarI | CTCTTC | 1 cut(s) | 147 |
| EciI | GGCGGA | 1 cut(s) | 830 |
| Ecl136II | GAGCTC | 1 cut(s) | 956 |
| Eco130I | CCWWGG | 1 cut(s) | 801 |
| Eco24I | GRGCYC | 1 cut(s) | 958 |
| Eco31I | GGTCTC | 1 cut(s) | 294 |
| Eco53kI | GAGCTC | 1 cut(s) | 956 |
| Eco57I | CTGAAG | 1 cut(s) | 702 |
| Eco72I | CACGTG | 1 cut(s) | 914 |
| EcoICRI | GAGCTC | 1 cut(s) | 956 |
| EcoRII | CCWGG | 2 cut(s) | 303, 843 |
| EcoT14I | CCWWGG | 1 cut(s) | 801 |
| EcoT38I | GRGCYC | 1 cut(s) | 958 |
| ErhI | CCWWGG | 1 cut(s) | 801 |
| FaeI | CATG | 4 cut(s) | 419, 535, 790, 805 |
| FaiI | YATR | 8 cut(s) | 204, 417, 468, 533, 650, 788, 803, 970 |
| FaqI | GGGAC | 1 cut(s) | 760 |
| FatI | CATG | 4 cut(s) | 415, 531, 786, 801 |
| FauI | CCCGC | 1 cut(s) | 737 |
| Fnu4HI | GCNGC | 7 cut(s) | 93, 171, 212, 226, 257, 498, 674 |
| FokI | GGATG | 3 cut(s) | 39, 571, 715 |
| FriOI | GRGCYC | 1 cut(s) | 958 |
| Fsp4HI | GCNGC | 7 cut(s) | 93, 171, 212, 226, 257, 498, 674 |
| FspAI | RTGCGCAY | 1 cut(s) | 414 |
| FspBI | CTAG | 3 cut(s) | 80, 215, 725 |
| FspI | TGCGCA | 1 cut(s) | 414 |
| GlaI | GCGC | 1 cut(s) | 414 |
| GluI | GCNGC | 7 cut(s) | 93, 171, 212, 226, 257, 498, 674 |
| GsaI | CCCAGC | 1 cut(s) | 244 |
| HaeIII | GGCC | 2 cut(s) | 308, 800 |
| HgaI | GACGC | 1 cut(s) | 268 |
| HhaI | GCGC | 1 cut(s) | 415 |
| Hin1I | GRCGYC | 1 cut(s) | 279 |
| Hin1II | CATG | 4 cut(s) | 419, 535, 790, 805 |
| Hin6I | GCGC | 1 cut(s) | 413 |
| HinP1I | GCGC | 1 cut(s) | 413 |
| HindIII | AAGCTT | 1 cut(s) | 599 |
| HinfI | GANTC | 5 cut(s) | 101, 139, 425, 610, 748 |
| HphI | GGTGA | 1 cut(s) | 434 |
| Hpy166II | GTNNAC | 1 cut(s) | 824 |
| Hpy188I | TCNGA | 7 cut(s) | 18, 70, 100, 408, 430, 589, 795 |
| Hpy188III | TCNNGA | 2 cut(s) | 56, 481 |
| Hpy8I | GTNNAC | 1 cut(s) | 824 |
| HpyAV | CCTTC | 3 cut(s) | 112, 190, 824 |
| HpyCH4III | ACNGT | 5 cut(s) | 164, 360, 639, 720, 906 |
| HpyCH4IV | ACGT | 1 cut(s) | 913 |
| HpyCH4V | TGCA | 6 cut(s) | 259, 419, 497, 661, 874, 926 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 256, 344, 410, 686, 923 |
| HpyF3I | CTNAG | 5 cut(s) | 395, 429, 501, 549, 959 |
| HpySE526I | ACGT | 1 cut(s) | 913 |
| Hsp92I | GRCGYC | 1 cut(s) | 279 |
| Hsp92II | CATG | 4 cut(s) | 419, 535, 790, 805 |
| HspAI | GCGC | 1 cut(s) | 413 |
| Kzo9I | GATC | 4 cut(s) | 49, 58, 113, 130 |
| LmnI | GCTCC | 5 cut(s) | 74, 253, 472, 619, 968 |
| Lsp1109I | GCAGC | 6 cut(s) | 79, 182, 223, 243, 509, 685 |
| LweI | GCATC | 2 cut(s) | 334, 676 |
| MaeI | CTAG | 3 cut(s) | 80, 215, 725 |
| MaeII | ACGT | 1 cut(s) | 913 |
| MaeIII | GTNAC | 2 cut(s) | 107, 720 |
| MalI | GATC | 4 cut(s) | 51, 60, 115, 132 |
| MbiI | CCGCTC | 1 cut(s) | 744 |
| MboI | GATC | 4 cut(s) | 49, 58, 113, 130 |
| MboII | GAAGA | 5 cut(s) | 134, 205, 274, 380, 695 |
| MhlI | GDGCHC | 3 cut(s) | 79, 919, 958 |
| MlsI | TGGCCA | 1 cut(s) | 800 |
| MluCI | AATT | 1 cut(s) | 853 |
| MluNI | TGGCCA | 1 cut(s) | 800 |
| MlyI | GAGTC | 2 cut(s) | 133, 742 |
| MmeI | TCCRAC | 3 cut(s) | 48, 345, 597 |
| MnlI | CCTC | 5 cut(s) | 64, 160, 183, 390, 463 |
| Mox20I | TGGCCA | 1 cut(s) | 800 |
| MscI | TGGCCA | 1 cut(s) | 800 |
| MseI | TTAA | 1 cut(s) | 893 |
| MslI | CAYNNNNRTG | 2 cut(s) | 420, 806 |
| Msp20I | TGGCCA | 1 cut(s) | 800 |
| MspA1I | CMGCKG | 1 cut(s) | 548 |
| MspR9I | CCNGG | 2 cut(s) | 305, 845 |
| Mva1269I | GAATGC | 1 cut(s) | 415 |
| MvaI | CCWGG | 2 cut(s) | 305, 845 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 256, 344, 410, 686, 923 |
| NcoI | CCATGG | 1 cut(s) | 801 |
| NdeII | GATC | 4 cut(s) | 49, 58, 113, 130 |
| NlaIII | CATG | 4 cut(s) | 419, 535, 790, 805 |
| NlaIV | GGNNCC | 1 cut(s) | 621 |
| NmuCI | GTSAC | 2 cut(s) | 107, 720 |
| NsbI | TGCGCA | 1 cut(s) | 414 |
| NspI | RCATGY | 2 cut(s) | 419, 535 |
| NspV | TTCGAA | 1 cut(s) | 436 |
| PaeI | GCATGC | 1 cut(s) | 419 |
| PaqCI | CACCTGC | 1 cut(s) | 410 |
| PctI | GAATGC | 1 cut(s) | 415 |
| PfeI | GAWTC | 3 cut(s) | 101, 425, 610 |
| PkrI | GCNGC | 7 cut(s) | 94, 172, 213, 227, 258, 499, 675 |
| Ple19I | CGATCG | 1 cut(s) | 116 |
| PleI | GAGTC | 2 cut(s) | 133, 742 |
| PmaCI | CACGTG | 1 cut(s) | 914 |
| PmlI | CACGTG | 1 cut(s) | 914 |
| PpsI | GAGTC | 2 cut(s) | 133, 742 |
| Ppu21I | YACGTR | 1 cut(s) | 914 |
| Psp124BI | GAGCTC | 1 cut(s) | 958 |
| Psp6I | CCWGG | 2 cut(s) | 303, 843 |
| PspCI | CACGTG | 1 cut(s) | 914 |
| PspFI | CCCAGC | 1 cut(s) | 240 |
| PspGI | CCWGG | 2 cut(s) | 303, 843 |
| PspN4I | GGNNCC | 1 cut(s) | 621 |
| PspPI | GGNCC | 1 cut(s) | 307 |
| PstNI | CAGNNNCTG | 1 cut(s) | 256 |
| PvuI | CGATCG | 1 cut(s) | 116 |
| PvuII | CAGCTG | 1 cut(s) | 548 |
| RsaI | GTAC | 1 cut(s) | 823 |
| RsaNI | GTAC | 1 cut(s) | 822 |
| RseI | CAYNNNNRTG | 2 cut(s) | 420, 806 |
| SacI | GAGCTC | 1 cut(s) | 958 |
| SaqAI | TTAA | 1 cut(s) | 893 |
| SatI | GCNGC | 7 cut(s) | 93, 171, 212, 226, 257, 498, 674 |
| Sau3AI | GATC | 4 cut(s) | 49, 58, 113, 130 |
| Sau96I | GGNCC | 1 cut(s) | 307 |
| SchI | GAGTC | 2 cut(s) | 133, 742 |
| ScrFI | CCNGG | 2 cut(s) | 305, 845 |
| SduI | GDGCHC | 3 cut(s) | 79, 919, 958 |
| SfaNI | GCATC | 2 cut(s) | 334, 676 |
| SfuI | TTCGAA | 1 cut(s) | 436 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 420, 806 |
| SmlI | CTYRAG | 2 cut(s) | 245, 696 |
| SmoI | CTYRAG | 2 cut(s) | 245, 696 |
| SpeI | ACTAGT | 1 cut(s) | 79 |
| SphI | GCATGC | 1 cut(s) | 419 |
| Sse9I | AATT | 1 cut(s) | 853 |
| SsiI | CCGC | 3 cut(s) | 226, 744, 841 |
| SspMI | CTAG | 3 cut(s) | 80, 215, 725 |
| SstI | GAGCTC | 1 cut(s) | 958 |
| StyD4I | CCNGG | 2 cut(s) | 303, 843 |
| StyI | CCWWGG | 1 cut(s) | 801 |
| TaaI | ACNGT | 5 cut(s) | 164, 360, 639, 720, 906 |
| TaiI | ACGT | 1 cut(s) | 916 |
| TaqI | TCGA | 7 cut(s) | 104, 116, 436, 447, 740, 828, 979 |
| TaqII | GACCGA | 1 cut(s) | 126 |
| TasI | AATT | 1 cut(s) | 853 |
| TauI | GCSGC | 1 cut(s) | 228 |
| TfiI | GAWTC | 3 cut(s) | 101, 425, 610 |
| Tru1I | TTAA | 1 cut(s) | 893 |
| Tru9I | TTAA | 1 cut(s) | 893 |
| TseFI | GTSAC | 2 cut(s) | 107, 720 |
| TseI | GCWGC | 6 cut(s) | 92, 170, 211, 256, 497, 673 |
| Tsp45I | GTSAC | 2 cut(s) | 107, 720 |
| TspDTI | ATGAA | 4 cut(s) | 274, 401, 573, 753 |
| XceI | RCATGY | 2 cut(s) | 419, 535 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 317 |
| XspI | CTAG | 3 cut(s) | 80, 215, 725 |