AT5G06950
BZIP Family

transcription factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
2150840 .. 2154586
3747 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G06950.3

Sequence Viewer

Length: 993 bp
ATGGCTGATACCAGTCCGAGAACTGATGTCTCAACAGATGACGACACAGATCATCCTGATCTTGGGTCGGAGGGAGCACTAGTGAATACTGCTGCTTCTGATTCGAGTGACCGATCGAAGGGAAAGATGGATCAAAAGACTCTTCGTAGGCTTGCTCAAAACCGTGAGGCAGCAAGGAAAAGCAGATTGAGGAAGAAGGCTTATGTTCAGCAGCTAGAGAACAGCCGCTTGAAACTAACCCAGCTTGAGCAGGAGCTGCAAAGAGCAAGACAGCAGGGCGTCTTCATTTCAGGCACAGGAGACCAGGCCCATTCTACTGGTGGAAATGGTGCTTTGGCGTTTGATGCTGAACATTCACGGTGGTTGGAAGAAAAGAACAAGCAAATGAACGAGCTGAGGTCTGCTCTGAATGCGCATGCAGGTGATTCTGAGCTTCGAATAATAGTCGATGGTGTGATGGCTCACTATGAGGAGCTTTTCAGGATAAAGAGCAATGCAGCTAAGAATGATGTCTTTCACTTGCTATCTGGCATGTGGAAAACACCAGCTGAGAGATGTTTCTTGTGGCTCGGTGGATTTCGTTCATCCGAACTTCTAAAGCTTCTGGCGAATCAGTTGGAGCCAATGACAGAGAGACAGTTGATGGGCATAAATAACCTGCAACAGACATCGCAGCAGGCTGAAGATGCTTTGTCTCAAGGGATGGAGAGCTTACAACAGTCACTAGCTGATACTTTATCGAGCGGGACTCTTGGTTCAAGTTCATCAGGGAATGTCGCAAGCTACATGGGTCAGATGGCCATGGCAATGGGAAAGTTAGGTACACTCGAAGGATTTATCCGCCAGGCTGATAATTTGAGACTACAAACATTGCAACAGATGATAAGAGTATTAACAACGAGACAGTCAGCACGTGCTCTACTTGCAATACACGATTACTTCTCACGGCTACGAGCTCTAAGCTCCTTATGGCTTGCTCGACCCAGAGAGTGA

Protein Analysis

330

Amino Acids

36.68

Weight (kDa)

8.63

Isoelectric Point (pI)

52.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_1 PF00170 46 - 86 1e-06 bZIP transcription factor
DOG1 PF14144 128 - 203 1.6e-34 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 410
Acc16I TGCGCA 1 cut(s) 414
Acc36I ACCTGC 2 cut(s) 410, 666
AccBSI CCGCTC 1 cut(s) 744
AciI CCGC 3 cut(s) 226, 744, 841
AclWI GGATC 1 cut(s) 138
AcoI YGGCCR 1 cut(s) 798
AcuI CTGAAG 1 cut(s) 702
AcvI CACGTG 1 cut(s) 914
AcyI GRCGYC 1 cut(s) 279
AfaI GTAC 1 cut(s) 823
AfiI CCNNNNNNNGG 2 cut(s) 62, 118
AgsI TTSAA 2 cut(s) 232, 759
AhlI ACTAGT 1 cut(s) 79
AjnI CCWGG 2 cut(s) 303, 843
AloI GAACNNNNNNTCC 2 cut(s) 739, 771
Alw21I GWGCWC 3 cut(s) 79, 919, 958
Alw26I GTCTC 6 cut(s) 34, 294, 628, 699, 853, 895
AlwI GGATC 1 cut(s) 138
AlwNI CAGNNNCTG 1 cut(s) 256
AoxI GGCC 2 cut(s) 306, 798
ApeKI GCWGC 6 cut(s) 92, 170, 211, 256, 497, 673
AspLEI GCGC 1 cut(s) 415
AspS9I GGNCC 1 cut(s) 307
AsuHPI GGTGA 1 cut(s) 434
AsuII TTCGAA 1 cut(s) 436
BalI TGGCCA 1 cut(s) 800
BanII GRGCYC 1 cut(s) 958
BbrPI CACGTG 1 cut(s) 914
BbsI GAAGAC 1 cut(s) 274
Bbv12I GWGCWC 3 cut(s) 79, 919, 958
BbvCI CCTCAGC 1 cut(s) 395
BbvI GCAGC 6 cut(s) 79, 182, 223, 243, 509, 685
BccI CCATC 6 cut(s) 121, 443, 451, 637, 697, 790
BceAI ACGGC 1 cut(s) 962
BciT130I CCWGG 2 cut(s) 305, 845
BcoDI GTCTC 6 cut(s) 34, 294, 628, 699, 853, 895
BcuI ACTAGT 1 cut(s) 79
BfaI CTAG 3 cut(s) 80, 215, 725
BfuAI ACCTGC 2 cut(s) 410, 666
BisI GCNGC 7 cut(s) 93, 171, 212, 226, 257, 498, 674
BlsI GCNGC 7 cut(s) 94, 172, 213, 227, 258, 499, 675
Bme1390I CCNGG 2 cut(s) 305, 845
BmgT120I GGNCC 1 cut(s) 307
BmiI GGNNCC 1 cut(s) 621
BmrFI CCNGG 2 cut(s) 305, 845
BmsI GCATC 2 cut(s) 334, 676
BpiI GAAGAC 1 cut(s) 274
BplI GAGNNNNNCTC 4 cut(s) 388, 420, 733, 765
Bpu10I CCTNAGC 1 cut(s) 395
Bpu14I TTCGAA 1 cut(s) 436
BpuEI CTTGAG 2 cut(s) 266, 681
BsaAI YACGTR 1 cut(s) 914
BsaHI GRCGYC 1 cut(s) 279
BsaI GGTCTC 1 cut(s) 294
BsaJI CCNNGG 1 cut(s) 801
BsaXI ACNNNNNCTCC 2 cut(s) 66, 96
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 118
Bse1I ACTGG 2 cut(s) 12, 322
Bse3DI GCAATG 3 cut(s) 499, 813, 869
BseBI CCWGG 2 cut(s) 305, 845
BseDI CCNNGG 1 cut(s) 801
BseGI GGATG 3 cut(s) 52, 584, 708
BseLI CCNNNNNNNGG 2 cut(s) 62, 118
BseMI GCAATG 3 cut(s) 499, 813, 869
BseMII CTCAG 3 cut(s) 386, 420, 540
BseNI ACTGG 2 cut(s) 12, 322
BseRI GAGGAG 1 cut(s) 485
BseXI GCAGC 6 cut(s) 79, 182, 223, 243, 509, 685
BseYI CCCAGC 1 cut(s) 240
Bsh1285I CGRYCG 1 cut(s) 116
BshFI GGCC 2 cut(s) 308, 800
BsiEI CGRYCG 1 cut(s) 116
BsiHKAI GWGCWC 3 cut(s) 79, 919, 958
BslFI GGGAC 1 cut(s) 760
BslI CCNNNNNNNGG 2 cut(s) 62, 118
BsmAI GTCTC 6 cut(s) 34, 294, 628, 699, 853, 895
BsmFI GGGAC 1 cut(s) 760
BsmI GAATGC 1 cut(s) 415
BsnI GGCC 2 cut(s) 308, 800
Bso31I GGTCTC 1 cut(s) 294
Bsp119I TTCGAA 1 cut(s) 436
Bsp1286I GDGCHC 3 cut(s) 79, 919, 958
Bsp143I GATC 4 cut(s) 49, 58, 113, 130
Bsp19I CCATGG 1 cut(s) 801
BspACI CCGC 3 cut(s) 226, 744, 841
BspANI GGCC 2 cut(s) 308, 800
BspCNI CTCAG 3 cut(s) 387, 421, 541
BspLI GGNNCC 1 cut(s) 621
BspMI ACCTGC 2 cut(s) 410, 666
BspPI GGATC 1 cut(s) 138
BspT104I TTCGAA 1 cut(s) 436
BspTNI GGTCTC 1 cut(s) 294
BsrBI CCGCTC 1 cut(s) 744
BsrDI GCAATG 3 cut(s) 499, 813, 869
BsrI ACTGG 2 cut(s) 12, 322
BssECI CCNNGG 1 cut(s) 801
BssMI GATC 4 cut(s) 49, 58, 113, 130
BssNI GRCGYC 1 cut(s) 279
BssT1I CCWWGG 1 cut(s) 801
Bst2UI CCWGG 2 cut(s) 305, 845
Bst4CI ACNGT 5 cut(s) 164, 360, 639, 720, 906
Bst6I CTCTTC 1 cut(s) 147
BstACI GRCGYC 1 cut(s) 279
BstAPI GCANNNNNTGC 1 cut(s) 256
BstBAI YACGTR 1 cut(s) 914
BstBI TTCGAA 1 cut(s) 436
BstC8I GCNNGC 5 cut(s) 153, 417, 678, 781, 975
BstDEI CTNAG 5 cut(s) 395, 429, 501, 549, 959
BstDSI CCRYGG 1 cut(s) 801
BstF5I GGATG 3 cut(s) 52, 584, 708
BstHHI GCGC 1 cut(s) 415
BstKTI GATC 4 cut(s) 52, 61, 116, 133
BstMAI GTCTC 6 cut(s) 34, 294, 628, 699, 853, 895
BstMBI GATC 4 cut(s) 49, 58, 113, 130
BstMCI CGRYCG 1 cut(s) 116
BstMWI GCNNNNNNNGC 5 cut(s) 256, 344, 410, 686, 923
BstNI CCWGG 2 cut(s) 305, 845
BstNSI RCATGY 2 cut(s) 419, 535
BstSCI CCNGG 2 cut(s) 303, 843
BstV1I GCAGC 6 cut(s) 79, 182, 223, 243, 509, 685
BstV2I GAAGAC 1 cut(s) 274
BstXI CCANNNNNNTGG 2 cut(s) 317, 808
BsuRI GGCC 2 cut(s) 308, 800
BtgI CCRYGG 1 cut(s) 801
BtgZI GCGATG 1 cut(s) 654
BtsCI GGATG 3 cut(s) 52, 584, 708
BveI ACCTGC 2 cut(s) 410, 666
Cac8I GCNNGC 5 cut(s) 153, 417, 678, 781, 975
CaiI CAGNNNCTG 1 cut(s) 256
CfoI GCGC 1 cut(s) 415
Cfr13I GGNCC 1 cut(s) 307
CseI GACGC 1 cut(s) 268
Csp6I GTAC 1 cut(s) 822
CviAII CATG 4 cut(s) 416, 532, 787, 802
CviQI GTAC 1 cut(s) 822
DdeI CTNAG 5 cut(s) 395, 429, 501, 549, 959
DpnI GATC 4 cut(s) 51, 60, 115, 132
DpnII GATC 4 cut(s) 49, 58, 113, 130
EaeI YGGCCR 1 cut(s) 798
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
EciI GGCGGA 1 cut(s) 830
Ecl136II GAGCTC 1 cut(s) 956
Eco130I CCWWGG 1 cut(s) 801
Eco24I GRGCYC 1 cut(s) 958
Eco31I GGTCTC 1 cut(s) 294
Eco53kI GAGCTC 1 cut(s) 956
Eco57I CTGAAG 1 cut(s) 702
Eco72I CACGTG 1 cut(s) 914
EcoICRI GAGCTC 1 cut(s) 956
EcoRII CCWGG 2 cut(s) 303, 843
EcoT14I CCWWGG 1 cut(s) 801
EcoT38I GRGCYC 1 cut(s) 958
ErhI CCWWGG 1 cut(s) 801
FaeI CATG 4 cut(s) 419, 535, 790, 805
FaiI YATR 8 cut(s) 204, 417, 468, 533, 650, 788, 803, 970
FaqI GGGAC 1 cut(s) 760
FatI CATG 4 cut(s) 415, 531, 786, 801
FauI CCCGC 1 cut(s) 737
Fnu4HI GCNGC 7 cut(s) 93, 171, 212, 226, 257, 498, 674
FokI GGATG 3 cut(s) 39, 571, 715
FriOI GRGCYC 1 cut(s) 958
Fsp4HI GCNGC 7 cut(s) 93, 171, 212, 226, 257, 498, 674
FspAI RTGCGCAY 1 cut(s) 414
FspBI CTAG 3 cut(s) 80, 215, 725
FspI TGCGCA 1 cut(s) 414
GlaI GCGC 1 cut(s) 414
GluI GCNGC 7 cut(s) 93, 171, 212, 226, 257, 498, 674
GsaI CCCAGC 1 cut(s) 244
HaeIII GGCC 2 cut(s) 308, 800
HgaI GACGC 1 cut(s) 268
HhaI GCGC 1 cut(s) 415
Hin1I GRCGYC 1 cut(s) 279
Hin1II CATG 4 cut(s) 419, 535, 790, 805
Hin6I GCGC 1 cut(s) 413
HinP1I GCGC 1 cut(s) 413
HindIII AAGCTT 1 cut(s) 599
HinfI GANTC 5 cut(s) 101, 139, 425, 610, 748
HphI GGTGA 1 cut(s) 434
Hpy166II GTNNAC 1 cut(s) 824
Hpy188I TCNGA 7 cut(s) 18, 70, 100, 408, 430, 589, 795
Hpy188III TCNNGA 2 cut(s) 56, 481
Hpy8I GTNNAC 1 cut(s) 824
HpyAV CCTTC 3 cut(s) 112, 190, 824
HpyCH4III ACNGT 5 cut(s) 164, 360, 639, 720, 906
HpyCH4IV ACGT 1 cut(s) 913
HpyCH4V TGCA 6 cut(s) 259, 419, 497, 661, 874, 926
HpyF10VI GCNNNNNNNGC 5 cut(s) 256, 344, 410, 686, 923
HpyF3I CTNAG 5 cut(s) 395, 429, 501, 549, 959
HpySE526I ACGT 1 cut(s) 913
Hsp92I GRCGYC 1 cut(s) 279
Hsp92II CATG 4 cut(s) 419, 535, 790, 805
HspAI GCGC 1 cut(s) 413
Kzo9I GATC 4 cut(s) 49, 58, 113, 130
LmnI GCTCC 5 cut(s) 74, 253, 472, 619, 968
Lsp1109I GCAGC 6 cut(s) 79, 182, 223, 243, 509, 685
LweI GCATC 2 cut(s) 334, 676
MaeI CTAG 3 cut(s) 80, 215, 725
MaeII ACGT 1 cut(s) 913
MaeIII GTNAC 2 cut(s) 107, 720
MalI GATC 4 cut(s) 51, 60, 115, 132
MbiI CCGCTC 1 cut(s) 744
MboI GATC 4 cut(s) 49, 58, 113, 130
MboII GAAGA 5 cut(s) 134, 205, 274, 380, 695
MhlI GDGCHC 3 cut(s) 79, 919, 958
MlsI TGGCCA 1 cut(s) 800
MluCI AATT 1 cut(s) 853
MluNI TGGCCA 1 cut(s) 800
MlyI GAGTC 2 cut(s) 133, 742
MmeI TCCRAC 3 cut(s) 48, 345, 597
MnlI CCTC 5 cut(s) 64, 160, 183, 390, 463
Mox20I TGGCCA 1 cut(s) 800
MscI TGGCCA 1 cut(s) 800
MseI TTAA 1 cut(s) 893
MslI CAYNNNNRTG 2 cut(s) 420, 806
Msp20I TGGCCA 1 cut(s) 800
MspA1I CMGCKG 1 cut(s) 548
MspR9I CCNGG 2 cut(s) 305, 845
Mva1269I GAATGC 1 cut(s) 415
MvaI CCWGG 2 cut(s) 305, 845
MwoI GCNNNNNNNGC 5 cut(s) 256, 344, 410, 686, 923
NcoI CCATGG 1 cut(s) 801
NdeII GATC 4 cut(s) 49, 58, 113, 130
NlaIII CATG 4 cut(s) 419, 535, 790, 805
NlaIV GGNNCC 1 cut(s) 621
NmuCI GTSAC 2 cut(s) 107, 720
NsbI TGCGCA 1 cut(s) 414
NspI RCATGY 2 cut(s) 419, 535
NspV TTCGAA 1 cut(s) 436
PaeI GCATGC 1 cut(s) 419
PaqCI CACCTGC 1 cut(s) 410
PctI GAATGC 1 cut(s) 415
PfeI GAWTC 3 cut(s) 101, 425, 610
PkrI GCNGC 7 cut(s) 94, 172, 213, 227, 258, 499, 675
Ple19I CGATCG 1 cut(s) 116
PleI GAGTC 2 cut(s) 133, 742
PmaCI CACGTG 1 cut(s) 914
PmlI CACGTG 1 cut(s) 914
PpsI GAGTC 2 cut(s) 133, 742
Ppu21I YACGTR 1 cut(s) 914
Psp124BI GAGCTC 1 cut(s) 958
Psp6I CCWGG 2 cut(s) 303, 843
PspCI CACGTG 1 cut(s) 914
PspFI CCCAGC 1 cut(s) 240
PspGI CCWGG 2 cut(s) 303, 843
PspN4I GGNNCC 1 cut(s) 621
PspPI GGNCC 1 cut(s) 307
PstNI CAGNNNCTG 1 cut(s) 256
PvuI CGATCG 1 cut(s) 116
PvuII CAGCTG 1 cut(s) 548
RsaI GTAC 1 cut(s) 823
RsaNI GTAC 1 cut(s) 822
RseI CAYNNNNRTG 2 cut(s) 420, 806
SacI GAGCTC 1 cut(s) 958
SaqAI TTAA 1 cut(s) 893
SatI GCNGC 7 cut(s) 93, 171, 212, 226, 257, 498, 674
Sau3AI GATC 4 cut(s) 49, 58, 113, 130
Sau96I GGNCC 1 cut(s) 307
SchI GAGTC 2 cut(s) 133, 742
ScrFI CCNGG 2 cut(s) 305, 845
SduI GDGCHC 3 cut(s) 79, 919, 958
SfaNI GCATC 2 cut(s) 334, 676
SfuI TTCGAA 1 cut(s) 436
SmiMI CAYNNNNRTG 2 cut(s) 420, 806
SmlI CTYRAG 2 cut(s) 245, 696
SmoI CTYRAG 2 cut(s) 245, 696
SpeI ACTAGT 1 cut(s) 79
SphI GCATGC 1 cut(s) 419
Sse9I AATT 1 cut(s) 853
SsiI CCGC 3 cut(s) 226, 744, 841
SspMI CTAG 3 cut(s) 80, 215, 725
SstI GAGCTC 1 cut(s) 958
StyD4I CCNGG 2 cut(s) 303, 843
StyI CCWWGG 1 cut(s) 801
TaaI ACNGT 5 cut(s) 164, 360, 639, 720, 906
TaiI ACGT 1 cut(s) 916
TaqI TCGA 7 cut(s) 104, 116, 436, 447, 740, 828, 979
TaqII GACCGA 1 cut(s) 126
TasI AATT 1 cut(s) 853
TauI GCSGC 1 cut(s) 228
TfiI GAWTC 3 cut(s) 101, 425, 610
Tru1I TTAA 1 cut(s) 893
Tru9I TTAA 1 cut(s) 893
TseFI GTSAC 2 cut(s) 107, 720
TseI GCWGC 6 cut(s) 92, 170, 211, 256, 497, 673
Tsp45I GTSAC 2 cut(s) 107, 720
TspDTI ATGAA 4 cut(s) 274, 401, 573, 753
XceI RCATGY 2 cut(s) 419, 535
XcmI CCANNNNNNNNNTGG 1 cut(s) 317
XspI CTAG 3 cut(s) 80, 215, 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.