Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001056

Physical Location & Seq

Genomic Coordinates Reverse (-)

3890072 .. 3897250

Gene Structure 7179 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g03530.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGCTGATAGCCCCAGGACTGATATTTCTACAGATGTGGATACTGATGACAAGAATCAAATGTATGATAGAGGGGATCAATATGCCATCACTGCTGCGGTTTCAGATTCCAGTGATAAATCTAAAGACCCAAAGGATCAGAAGACTCTTCGAAGGCTCGCTCAAAATCGTGAGGCCGCAAGAAAAAGTCGGTTGAGGAAGAAAGCATATGTTCAGCAGCTGGAGACTAGTCGTTTGAAGCTGAGTCAACTAGAACAAGAGCTTCAGCGAGCCAGACAGCAGGGAATCTTCATATCAAGCTCAGGGGGAGACGCTGCTCATTCGACAAGTGGAAATGGGGCTATGGCATTCGATGTAGAGTATGGGCGGTGGCTGGAAGATCAAAATCGGCAAATTAATGAACTGAGATCCGCTGTAAATTCTCATGCAAGTGATGCAGAGCTTCGTATTATTGTAGATGGAATCTTGGCACATTATGATGAGATTTTTAGGCTGAAGGGCACAGCAGCTAAAGCTGATGTATTCCATCTGTTGTCTGGTATGTGGAAAACACCTGCGGAAAGGTGTTTCTTGTGGCTTGGTGGTTTTCGTTCGTCTGAGCTCCTGAAGCTTCTTGTTAATCAGTTGGAGCCTCTGACAGAGCAGCAGTTAGTGGGGATTACTAACTTGCAACAATCGTCCCAACAGGCAGAAGATGCATTATCTCAAGGGATGGAGGCATTGCAACAATCTCTCGCAGAGACTTTGTCCAGTGGATCTCTTGGCTCCTCAGGTTCGTCTGGTAATGTTGCAAACTACATGGGTCAAATGGCCATGGCAATGGGAAAGCTAGGTACTCTGGAAGGGTTTATCCGCCAGGCTGACAATTTGCGGCAACAAACACTGCAACAAATGCATCGTATCTTGACAACTCGCCAGTCGGCCCGTGCACTTTTGGCTATAAATGATTATTTCTCCCGACTACGAGCTCTCAGTTCACTGTGGCTTGCCCGTCCAAGAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045087 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046677 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1 bZIP_2

Protein Analysis

335

Amino Acids

37.19

Weight (kDa)

7.83

Isoelectric Point (pI)

55.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	46 - 88	2.8e-07	bZIP transcription factor
DOG1	PF14144	131 - 206	1.9e-33	Seed dormancy control

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12250 AT3G12250 AT3G12250 AT3G12250 AT3G12250 AT3G12250 AT3G12250 AT5G06950 AT5G06950 AT5G06950 AT5G06950 AT5G06950 AT5G06960 AT5G06960 AT5G06960
fragaria_vesca	FvH4_6g25330 FvH4_6g25330 FvH4_6g25330 FvH4_6g25330 FvH4_6g25330 FvH4_6g25330 FvH4_6g25330 FvH4_6g25330 FvH4_7g03530
malus_domestica	MD02G1279400.v1.1 MD07G1047300.v1.1 MD12G1096400.v1.1 MD14G1089200.v1.1
prunus_persica	Prupe.2G041300_v2.0.a1 Prupe.7G037900_v2.0.a1 Prupe.7G037900_v2.0.a1 Prupe.7G037900_v2.0.a1 Prupe.7G037900_v2.0.a1
pyrus_communis	pycom02g23960 pycom07g03420 pycom12g08570 pycom14g07870
rosa_chinensis	RchiOBHm_Chr1g0325831 RchiOBHm_Chr2g0125681
rosa_laevigata	RLG00000018877 RLG00000030099
rosa_multiflora	Rmu_sc0013657.1_g000002 Rmu_ssc0000055.1_g000021
rosa_roxburghii	Rroxscaffold_2G00117830 Rroxscaffold_4G00324240
rosa_rugosa	Rorug01G0055400 Rorug02G0258500 Rorug02G0258600.1 Rorug02G0258700 Rorug02G0258700 Rorug02G0258700
rosa_samantha	Rh1AG071800 Rh1BG058700 Rh1CG071100 Rh1DG075900 Rh2AG317000 Rh2BG324900 Rh2CG306800
rosa_wichuraiana	Rw1G005840 Rw2G025630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	562
Acc36I	ACCTGC	1 cut(s)	562
AciI	CCGC	7 cut(s)	98, 177, 367, 411, 557, 853, 871
AclWI	GGATC	4 cut(s)	84, 144, 402, 763
AcoI	YGGCCR	1 cut(s)	810
AcsI	RAATTY	1 cut(s)	418
AcuI	CTGAAG	3 cut(s)	248, 515, 626
AfaI	GTAC	1 cut(s)	835
AgsI	TTSAA	1 cut(s)	238
AhlI	ACTAGT	1 cut(s)	227
AjnI	CCWGG	2 cut(s)	14, 855
Alw21I	GWGCWC	3 cut(s)	603, 931, 970
Alw26I	GTCTC	3 cut(s)	218, 303, 734
Alw44I	GTGCAC	1 cut(s)	927
AlwI	GGATC	4 cut(s)	84, 144, 402, 763
AlwNI	CAGNNNCTG	1 cut(s)	220
AoxI	GGCC	3 cut(s)	174, 810, 921
ApaLI	GTGCAC	1 cut(s)	927
ApeKI	GCWGC	5 cut(s)	95, 217, 314, 506, 643
ApoI	RAATTY	1 cut(s)	418
ArsI	GACNNNNNNTTYG	2 cut(s)	217, 249
AseI	ATTAAT	1 cut(s)	396
AspS9I	GGNCC	1 cut(s)	922
AsuII	TTCGAA	1 cut(s)	151
AxyI	CCTNAGG	1 cut(s)	769
BaeGI	GKGCMC	2 cut(s)	503, 931
BalI	TGGCCA	1 cut(s)	812
BanII	GRGCYC	2 cut(s)	603, 970
BbsI	GAAGAC	1 cut(s)	149
Bbv12I	GWGCWC	3 cut(s)	603, 931, 970
BbvI	GCAGC	5 cut(s)	82, 229, 301, 518, 655
BccI	CCATC	4 cut(s)	95, 452, 534, 706
BciT130I	CCWGG	2 cut(s)	16, 857
BciVI	GTATCC	1 cut(s)	34
BcoDI	GTCTC	3 cut(s)	218, 303, 734
BcuI	ACTAGT	1 cut(s)	227
BfaI	CTAG	3 cut(s)	228, 251, 830
BfmI	CTRYAG	1 cut(s)	30
BfuAI	ACCTGC	1 cut(s)	562
BfuI	GTATCC	1 cut(s)	34
BisI	GCNGC	7 cut(s)	96, 177, 218, 315, 507, 644, 872
BlsI	GCNGC	7 cut(s)	97, 178, 219, 316, 508, 645, 873
Bme1390I	CCNGG	2 cut(s)	16, 857
BmgT120I	GGNCC	1 cut(s)	922
BmiI	GGNNCC	2 cut(s)	630, 766
BmrFI	CCNGG	2 cut(s)	16, 857
BmsI	GCATC	3 cut(s)	424, 685, 904
BpiI	GAAGAC	1 cut(s)	149
BpmI	CTGGAG	1 cut(s)	242
Bpu10I	CCTNAGC	1 cut(s)	301
Bpu14I	TTCGAA	1 cut(s)	151
BpuEI	CTTGAG	1 cut(s)	690
BsaBI	GATNNNNATC	1 cut(s)	384
BsaJI	CCNNGG	2 cut(s)	14, 813
Bse1I	ACTGG	3 cut(s)	111, 750, 916
Bse21I	CCTNAGG	1 cut(s)	769
Bse3DI	GCAATG	2 cut(s)	719, 825
Bse8I	GATNNNNATC	1 cut(s)	384
BseBI	CCWGG	2 cut(s)	16, 857
BseDI	CCNNGG	2 cut(s)	14, 813
BseGI	GGATG	1 cut(s)	717
BseJI	GATNNNNATC	1 cut(s)	384
BseMI	GCAATG	2 cut(s)	719, 825
BseMII	CTCAG	6 cut(s)	233, 315, 395, 588, 783, 985
BseNI	ACTGG	3 cut(s)	111, 750, 916
BseRI	GAGGAG	1 cut(s)	757
BseSI	GKGCMC	2 cut(s)	503, 931
BseXI	GCAGC	5 cut(s)	82, 229, 301, 518, 655
BshFI	GGCC	3 cut(s)	176, 812, 923
BsiHKAI	GWGCWC	3 cut(s)	603, 931, 970
BslFI	GGGAC	1 cut(s)	664
BsmAI	GTCTC	3 cut(s)	218, 303, 734
BsmBI	CGTCTC	1 cut(s)	303
BsmFI	GGGAC	1 cut(s)	664
BsmI	GAATGC	1 cut(s)	347
BsnI	GGCC	3 cut(s)	176, 812, 923
Bsp119I	TTCGAA	1 cut(s)	151
Bsp1286I	GDGCHC	4 cut(s)	503, 603, 931, 970
Bsp143I	GATC	5 cut(s)	76, 136, 379, 407, 755
Bsp19I	CCATGG	1 cut(s)	813
BspACI	CCGC	7 cut(s)	98, 177, 367, 411, 557, 853, 871
BspANI	GGCC	3 cut(s)	176, 812, 923
BspCNI	CTCAG	6 cut(s)	234, 314, 396, 589, 782, 984
BspLI	GGNNCC	2 cut(s)	630, 766
BspMI	ACCTGC	1 cut(s)	562
BspPI	GGATC	4 cut(s)	84, 144, 402, 763
BspT104I	TTCGAA	1 cut(s)	151
BsrDI	GCAATG	2 cut(s)	719, 825
BsrI	ACTGG	3 cut(s)	111, 750, 916
BssECI	CCNNGG	2 cut(s)	14, 813
BssMI	GATC	5 cut(s)	76, 136, 379, 407, 755
BssT1I	CCWWGG	1 cut(s)	813
Bst2UI	CCWGG	2 cut(s)	16, 857
Bst4CI	ACNGT	1 cut(s)	981
Bst6I	CTCTTC	1 cut(s)	153
BstAPI	GCANNNNNTGC	3 cut(s)	434, 695, 892
BstBI	TTCGAA	1 cut(s)	151
BstC8I	GCNNGC	3 cut(s)	159, 270, 987
BstDEI	CTNAG	6 cut(s)	242, 301, 404, 597, 769, 971
BstDSI	CCRYGG	1 cut(s)	813
BstF5I	GGATG	1 cut(s)	717
BstKTI	GATC	5 cut(s)	79, 139, 382, 410, 758
BstMAI	GTCTC	3 cut(s)	218, 303, 734
BstMBI	GATC	5 cut(s)	76, 136, 379, 407, 755
BstMWI	GCNNNNNNNGC	7 cut(s)	92, 434, 512, 607, 695, 892, 935
BstNI	CCWGG	2 cut(s)	16, 857
BstSCI	CCNGG	2 cut(s)	14, 855
BstSFI	CTRYAG	1 cut(s)	30
BstSLI	GKGCMC	2 cut(s)	503, 931
BstV1I	GCAGC	5 cut(s)	82, 229, 301, 518, 655
BstV2I	GAAGAC	1 cut(s)	149
BstX2I	RGATCY	2 cut(s)	407, 755
BstXI	CCANNNNNNTGG	1 cut(s)	820
BstYI	RGATCY	2 cut(s)	407, 755
Bsu36I	CCTNAGG	1 cut(s)	769
BsuI	GTATCC	1 cut(s)	34
BsuRI	GGCC	3 cut(s)	176, 812, 923
BtgI	CCRYGG	1 cut(s)	813
BtsCI	GGATG	1 cut(s)	717
BtsI	GCAGTG	2 cut(s)	90, 881
BtsIMutI	CAGTG	5 cut(s)	90, 118, 757, 881, 977
BveI	ACCTGC	1 cut(s)	562
Cac8I	GCNNGC	3 cut(s)	159, 270, 987
CaiI	CAGNNNCTG	1 cut(s)	220
Cfr13I	GGNCC	1 cut(s)	922
CseI	GACGC	1 cut(s)	320
Csp6I	GTAC	1 cut(s)	834
CviAII	CATG	3 cut(s)	425, 799, 814
CviQI	GTAC	1 cut(s)	834
DdeI	CTNAG	6 cut(s)	242, 301, 404, 597, 769, 971
DpnI	GATC	5 cut(s)	78, 138, 381, 409, 757
DpnII	GATC	5 cut(s)	76, 136, 379, 407, 755
EaeI	YGGCCR	1 cut(s)	810
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
EciI	GGCGGA	1 cut(s)	842
Ecl136II	GAGCTC	2 cut(s)	601, 968
Eco130I	CCWWGG	1 cut(s)	813
Eco24I	GRGCYC	2 cut(s)	603, 970
Eco53kI	GAGCTC	2 cut(s)	601, 968
Eco57I	CTGAAG	3 cut(s)	248, 515, 626
Eco81I	CCTNAGG	1 cut(s)	769
EcoICRI	GAGCTC	2 cut(s)	601, 968
EcoRII	CCWGG	2 cut(s)	14, 855
EcoT14I	CCWWGG	1 cut(s)	813
EcoT22I	ATGCAT	2 cut(s)	700, 897
EcoT38I	GRGCYC	2 cut(s)	603, 970
ErhI	CCWWGG	1 cut(s)	813
Esp3I	CGTCTC	1 cut(s)	303
FaeI	CATG	3 cut(s)	428, 802, 817
FaqI	GGGAC	1 cut(s)	664
FatI	CATG	3 cut(s)	424, 798, 813
FauNDI	CATATG	1 cut(s)	208
Fnu4HI	GCNGC	7 cut(s)	96, 177, 218, 315, 507, 644, 872
FokI	GGATG	1 cut(s)	724
FriOI	GRGCYC	2 cut(s)	603, 970
Fsp4HI	GCNGC	7 cut(s)	96, 177, 218, 315, 507, 644, 872
FspBI	CTAG	3 cut(s)	228, 251, 830
GluI	GCNGC	7 cut(s)	96, 177, 218, 315, 507, 644, 872
GsuI	CTGGAG	1 cut(s)	242
HaeIII	GGCC	3 cut(s)	176, 812, 923
HgaI	GACGC	1 cut(s)	320
Hin1II	CATG	3 cut(s)	428, 802, 817
HincII	GTYRAC	1 cut(s)	248
HindII	GTYRAC	1 cut(s)	248
HindIII	AAGCTT	1 cut(s)	608
HinfI	GANTC	6 cut(s)	55, 107, 145, 244, 285, 462
Hpy166II	GTNNAC	3 cut(s)	248, 929, 977
Hpy188I	TCNGA	4 cut(s)	106, 141, 598, 636
Hpy188III	TCNNGA	5 cut(s)	170, 604, 839, 904, 957
Hpy8I	GTNNAC	3 cut(s)	248, 929, 977
HpyAV	CCTTC	3 cut(s)	147, 490, 836
HpyCH4III	ACNGT	1 cut(s)	981
HpyCH4V	TGCA	9 cut(s)	428, 437, 670, 698, 724, 791, 886, 895, 929
HpyF10VI	GCNNNNNNNGC	7 cut(s)	92, 434, 512, 607, 695, 892, 935
HpyF3I	CTNAG	6 cut(s)	242, 301, 404, 597, 769, 971
Hsp92II	CATG	3 cut(s)	428, 802, 817
Kzo9I	GATC	5 cut(s)	76, 136, 379, 407, 755
LmnI	GCTCC	3 cut(s)	606, 628, 770
Lsp1109I	GCAGC	5 cut(s)	82, 229, 301, 518, 655
LweI	GCATC	3 cut(s)	424, 685, 904
MaeI	CTAG	3 cut(s)	228, 251, 830
MalI	GATC	5 cut(s)	78, 138, 381, 409, 757
MboI	GATC	5 cut(s)	76, 136, 379, 407, 755
MboII	GAAGA	6 cut(s)	140, 154, 211, 280, 389, 704
MflI	RGATCY	2 cut(s)	407, 755
MhlI	GDGCHC	4 cut(s)	503, 603, 931, 970
MlsI	TGGCCA	1 cut(s)	812
MluCI	AATT	3 cut(s)	393, 418, 865
MluNI	TGGCCA	1 cut(s)	812
MlyI	GAGTC	2 cut(s)	139, 253
MmeI	TCCRAC	1 cut(s)	606
MnlI	CCTC	6 cut(s)	65, 166, 189, 642, 709, 778
Mox20I	TGGCCA	1 cut(s)	812
Mph1103I	ATGCAT	2 cut(s)	700, 897
MscI	TGGCCA	1 cut(s)	812
MseI	TTAA	2 cut(s)	396, 618
MslI	CAYNNNNRTG	3 cut(s)	429, 477, 818
Msp20I	TGGCCA	1 cut(s)	812
MspA1I	CMGCKG	2 cut(s)	220, 413
MspR9I	CCNGG	2 cut(s)	16, 857
Mva1269I	GAATGC	1 cut(s)	347
MvaI	CCWGG	2 cut(s)	16, 857
MwoI	GCNNNNNNNGC	7 cut(s)	92, 434, 512, 607, 695, 892, 935
NcoI	CCATGG	1 cut(s)	813
NdeI	CATATG	1 cut(s)	208
NdeII	GATC	5 cut(s)	76, 136, 379, 407, 755
NlaIII	CATG	3 cut(s)	428, 802, 817
NlaIV	GGNNCC	2 cut(s)	630, 766
NsiI	ATGCAT	2 cut(s)	700, 897
NspV	TTCGAA	1 cut(s)	151
PaqCI	CACCTGC	1 cut(s)	562
PctI	GAATGC	1 cut(s)	347
PfeI	GAWTC	4 cut(s)	55, 107, 285, 462
PflFI	GACNNNGTC	1 cut(s)	745
PkrI	GCNGC	7 cut(s)	97, 178, 219, 316, 508, 645, 873
PleI	GAGTC	2 cut(s)	139, 252
PpsI	GAGTC	2 cut(s)	139, 252
PshBI	ATTAAT	1 cut(s)	396
Psp124BI	GAGCTC	2 cut(s)	603, 970
Psp6I	CCWGG	2 cut(s)	14, 855
PspGI	CCWGG	2 cut(s)	14, 855
PspN4I	GGNNCC	2 cut(s)	630, 766
PspPI	GGNCC	1 cut(s)	922
PstNI	CAGNNNCTG	1 cut(s)	220
PsuI	RGATCY	2 cut(s)	407, 755
PsyI	GACNNNGTC	1 cut(s)	745
PvuII	CAGCTG	1 cut(s)	220
RsaI	GTAC	1 cut(s)	835
RsaNI	GTAC	1 cut(s)	834
RseI	CAYNNNNRTG	3 cut(s)	429, 477, 818
SacI	GAGCTC	2 cut(s)	603, 970
SaqAI	TTAA	2 cut(s)	396, 618
SatI	GCNGC	7 cut(s)	96, 177, 218, 315, 507, 644, 872
Sau3AI	GATC	5 cut(s)	76, 136, 379, 407, 755
Sau96I	GGNCC	1 cut(s)	922
SchI	GAGTC	2 cut(s)	139, 253
ScrFI	CCNGG	2 cut(s)	16, 857
SduI	GDGCHC	4 cut(s)	503, 603, 931, 970
SfaNI	GCATC	3 cut(s)	424, 685, 904
SfcI	CTRYAG	1 cut(s)	30
SfuI	TTCGAA	1 cut(s)	151
SmiMI	CAYNNNNRTG	3 cut(s)	429, 477, 818
SmlI	CTYRAG	1 cut(s)	705
SmoI	CTYRAG	1 cut(s)	705
SpeI	ACTAGT	1 cut(s)	227
Sse9I	AATT	3 cut(s)	393, 418, 865
SsiI	CCGC	7 cut(s)	98, 177, 367, 411, 557, 853, 871
SspMI	CTAG	3 cut(s)	228, 251, 830
SstI	GAGCTC	2 cut(s)	603, 970
StyD4I	CCNGG	2 cut(s)	14, 855
StyI	CCWWGG	1 cut(s)	813
TaaI	ACNGT	1 cut(s)	981
TaqI	TCGA	3 cut(s)	151, 323, 351
TasI	AATT	3 cut(s)	393, 418, 865
TauI	GCSGC	2 cut(s)	179, 874
TfiI	GAWTC	4 cut(s)	55, 107, 285, 462
Tru1I	TTAA	2 cut(s)	396, 618
Tru9I	TTAA	2 cut(s)	396, 618
TscAI	CASTG	5 cut(s)	97, 118, 757, 888, 984
TseI	GCWGC	5 cut(s)	95, 217, 314, 506, 643
TspDTI	ATGAA	2 cut(s)	280, 414
TspRI	CASTG	5 cut(s)	97, 118, 757, 888, 984
Tth111I	GACNNNGTC	1 cut(s)	745
VneI	GTGCAC	1 cut(s)	927
VspI	ATTAAT	1 cut(s)	396
XapI	RAATTY	1 cut(s)	418
XcmI	CCANNNNNNNNNTGG	1 cut(s)	533
XspI	CTAG	3 cut(s)	228, 251, 830
Zsp2I	ATGCAT	2 cut(s)	700, 897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.