Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001056

Physical Location & Seq

Genomic Coordinates Reverse (-)

41772912 .. 41781188

Gene Structure 8277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG317000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGCAGATGGAAGTCCTAGGACTGATACTTCAACAGATGACACAGAGGATAAAAATCAGATGATTGAAAGGAATCAAATGACTGGTCTTCTAGCTTCTGATTCCAGTGATAGATCAAAAGAAAAACCTGGGGATCAAAAGACGCTGCGCAGGCTTGCTCAAAATCGTGAAGCTGCCAGGAAAAGCCGGTTACGAAAAAAAGCATATGTACAACAACTCGAGAGTAGCCGGTTGAAATTAACCCAGCTTGAGCAAGAACTTCAGCGTGCCCGCCAGCAGGGCATATTCATTTCAAGCTCTGGAGATCAAGCCCATTCAATGAGTGGAAATGGTGCTTTGGCATTTGATGTGGAATATGCAAGGTGGCTGGAGGAGCACAACAGGCAGATAAATGAGTTGAGGGCTGCTGTTAATTCACATGCGGGTGACACGGAACTCCGTACTGTAATTGATAATGTCATTGCTCACTATGATGACATTTTTAGACTAAAGGGCATTGCAGCAAAAGCTGATGTTTTCCACATTTTGTCAGGAATGTGGAAAACACCAGCGGAACGGTGTTTTATGTGGATTGGTGGCTTCCGCTCATCTGAGCTTTTGAAGCTTCTTGTGCGTCAATTGGAACCCCTAACGGAGCAGCAAGTGATGAATATTTACAACTTACAGCAATCATCCCAGCAGGCTGAAGATGCTTTGTCACAAGGGATGGAAGCATTACAGCAGTCACTTGCTGAAACCTTGGCCAGTGGTTCACCTGGGCCATCAGGAACATCTGGGAATGTAGCAAACTATATGGGTCAAATGGCTATGGCGATGGGAAAGCTAGGCACTCTTGAGGGGTTCCTTCGCCAGGCTGATAATCTTCGCCAGCAAACTCTGCAACAAATGCATCGTATACTGACAACTCGGCAGTCAGCTCGTGCACTTCTTGCAATCAATGATTATTTCTCGCGTCTTAGAGCCCTCAGTTCTCTTTGGCTTGCCAGGCCCCGAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1 bZIP_2

Protein Analysis

332

Amino Acids

37.3

Weight (kDa)

8.94

Isoelectric Point (pI)

62.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	47 - 87	7.8e-07	bZIP transcription factor
DOG1	PF14144	129 - 204	2.3e-32	Seed dormancy control

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12250 AT3G12250 AT3G12250 AT3G12250 AT3G12250 AT3G12250 AT3G12250 AT5G06950 AT5G06950 AT5G06950 AT5G06950 AT5G06950 AT5G06960 AT5G06960 AT5G06960
fragaria_vesca	FvH4_6g25330 FvH4_6g25330 FvH4_6g25330 FvH4_6g25330 FvH4_6g25330 FvH4_6g25330 FvH4_6g25330 FvH4_6g25330 FvH4_7g03530
malus_domestica	MD02G1279400.v1.1 MD07G1047300.v1.1 MD12G1096400.v1.1 MD14G1089200.v1.1
prunus_persica	Prupe.2G041300_v2.0.a1 Prupe.7G037900_v2.0.a1 Prupe.7G037900_v2.0.a1 Prupe.7G037900_v2.0.a1 Prupe.7G037900_v2.0.a1
pyrus_communis	pycom02g23960 pycom07g03420 pycom12g08570 pycom14g07870
rosa_chinensis	RchiOBHm_Chr1g0325831 RchiOBHm_Chr2g0125681
rosa_laevigata	RLG00000018877 RLG00000030099
rosa_multiflora	Rmu_sc0013657.1_g000002 Rmu_ssc0000055.1_g000021
rosa_roxburghii	Rroxscaffold_2G00117830 Rroxscaffold_4G00324240
rosa_rugosa	Rorug01G0055400 Rorug02G0258500 Rorug02G0258600.1 Rorug02G0258700 Rorug02G0258700 Rorug02G0258700
rosa_samantha	Rh1AG071800 Rh1BG058700 Rh1CG071100 Rh1DG075900 Rh2AG317000 Rh2BG324900 Rh2CG306800
rosa_wichuraiana	Rw1G005840 Rw2G025630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	149
AccBSI	CCGCTC	1 cut(s)	585
AccI	GTMKAC	1 cut(s)	895
AccII	CGCG	1 cut(s)	952
AciI	CCGC	4 cut(s)	271, 422, 551, 583
AclWI	GGATC	1 cut(s)	141
AcoI	YGGCCR	1 cut(s)	741
AcuI	CTGAAG	2 cut(s)	245, 705
AfaI	GTAC	2 cut(s)	210, 442
AfiI	CCNNNNNNNGG	2 cut(s)	277, 850
AgsI	TTSAA	6 cut(s)	33, 68, 235, 294, 318, 601
AjnI	CCWGG	5 cut(s)	127, 176, 754, 849, 983
AluBI	AGCT	9 cut(s)	95, 173, 247, 297, 509, 595, 604, 823, 917
AluI	AGCT	9 cut(s)	95, 173, 247, 297, 509, 595, 604, 823, 917
Alw21I	GWGCWC	2 cut(s)	378, 925
Alw44I	GTGCAC	1 cut(s)	921
AlwI	GGATC	1 cut(s)	141
Ama87I	CYCGRG	2 cut(s)	218, 990
AoxI	GGCC	3 cut(s)	741, 758, 986
ApaLI	GTGCAC	1 cut(s)	921
ApeKI	GCWGC	5 cut(s)	145, 173, 404, 500, 637
ArsI	GACNNNNNNTTYG	2 cut(s)	70, 102
AspA2I	CCTAGG	1 cut(s)	17
AspLEI	GCGC	1 cut(s)	150
AspS9I	GGNCC	2 cut(s)	758, 987
AsuHPI	GGTGA	2 cut(s)	437, 744
AvaI	CYCGRG	2 cut(s)	218, 990
AvrII	CCTAGG	1 cut(s)	17
BaeGI	GKGCMC	2 cut(s)	271, 925
BalI	TGGCCA	1 cut(s)	743
BanII	GRGCYC	1 cut(s)	964
BauI	CACGAG	1 cut(s)	918
BbsI	GAAGAC	1 cut(s)	80
Bbv12I	GWGCWC	2 cut(s)	378, 925
BbvI	GCAGC	5 cut(s)	132, 160, 391, 512, 649
BccI	CCATC	4 cut(s)	2, 700, 769, 808
BcgI	CGANNNNNNTGC	2 cut(s)	899, 933
BciT130I	CCWGG	5 cut(s)	129, 178, 756, 851, 985
BfaI	CTAG	3 cut(s)	18, 92, 824
BglI	GCCNNNNNGGC	1 cut(s)	279
BisI	GCNGC	5 cut(s)	146, 174, 405, 501, 638
BlnI	CCTAGG	1 cut(s)	17
BlsI	GCNGC	5 cut(s)	147, 175, 406, 502, 639
Bme1390I	CCNGG	5 cut(s)	129, 178, 756, 851, 985
BmeT110I	CYCGRG	2 cut(s)	218, 990
BmgT120I	GGNCC	2 cut(s)	758, 987
BmiI	GGNNCC	3 cut(s)	624, 842, 989
BmrFI	CCNGG	5 cut(s)	129, 178, 756, 851, 985
BmsI	GCATC	2 cut(s)	679, 898
BpiI	GAAGAC	1 cut(s)	80
BpmI	CTGGAG	2 cut(s)	321, 389
BpuEI	CTTGAG	2 cut(s)	269, 854
BsaBI	GATNNNNATC	1 cut(s)	54
BsaJI	CCNNGG	4 cut(s)	17, 128, 738, 755
Bsc4I	CCNNNNNNNGG	2 cut(s)	277, 850
Bse118I	RCCGGY	2 cut(s)	186, 228
Bse1I	ACTGG	3 cut(s)	88, 105, 744
Bse3DI	GCAATG	2 cut(s)	459, 495
Bse8I	GATNNNNATC	1 cut(s)	54
BseBI	CCWGG	5 cut(s)	129, 178, 756, 851, 985
BseDI	CCNNGG	4 cut(s)	17, 128, 738, 755
BseGI	GGATG	2 cut(s)	671, 711
BseJI	GATNNNNATC	1 cut(s)	54
BseLI	CCNNNNNNNGG	2 cut(s)	277, 850
BseMI	GCAATG	2 cut(s)	459, 495
BseMII	CTCAG	2 cut(s)	582, 979
BseNI	ACTGG	3 cut(s)	88, 105, 744
BseRI	GAGGAG	1 cut(s)	386
BseSI	GKGCMC	2 cut(s)	271, 925
BseXI	GCAGC	5 cut(s)	132, 160, 391, 512, 649
BseYI	CCCAGC	2 cut(s)	243, 675
Bsh1236I	CGCG	1 cut(s)	952
BshFI	GGCC	3 cut(s)	743, 760, 988
BsiHKAI	GWGCWC	2 cut(s)	378, 925
BsiHKCI	CYCGRG	2 cut(s)	218, 990
BsiSI	CCGG	2 cut(s)	187, 229
BslI	CCNNNNNNNGG	2 cut(s)	277, 850
BsnI	GGCC	3 cut(s)	743, 760, 988
BsoBI	CYCGRG	2 cut(s)	218, 990
Bsp1286I	GDGCHC	4 cut(s)	271, 378, 925, 964
Bsp1407I	TGTACA	1 cut(s)	208
Bsp143I	GATC	3 cut(s)	113, 133, 304
BspACI	CCGC	4 cut(s)	271, 422, 551, 583
BspANI	GGCC	3 cut(s)	743, 760, 988
BspCNI	CTCAG	2 cut(s)	583, 978
BspFNI	CGCG	1 cut(s)	952
BspLI	GGNNCC	3 cut(s)	624, 842, 989
BspPI	GGATC	1 cut(s)	141
BsrBI	CCGCTC	1 cut(s)	585
BsrDI	GCAATG	2 cut(s)	459, 495
BsrFI	RCCGGY	2 cut(s)	186, 228
BsrGI	TGTACA	1 cut(s)	208
BsrI	ACTGG	3 cut(s)	88, 105, 744
BssAI	RCCGGY	2 cut(s)	186, 228
BssECI	CCNNGG	4 cut(s)	17, 128, 738, 755
BssMI	GATC	3 cut(s)	113, 133, 304
BssNAI	GTATAC	1 cut(s)	896
BssSI	CACGAG	1 cut(s)	918
BssT1I	CCWWGG	2 cut(s)	17, 738
Bst1107I	GTATAC	1 cut(s)	896
Bst2BI	CACGAG	1 cut(s)	918
Bst2UI	CCWGG	5 cut(s)	129, 178, 756, 851, 985
Bst4CI	ACNGT	2 cut(s)	445, 558
BstAPI	GCANNNNNTGC	3 cut(s)	877, 886, 929
BstAUI	TGTACA	1 cut(s)	208
BstC8I	GCNNGC	8 cut(s)	152, 156, 267, 271, 275, 681, 869, 981
BstDEI	CTNAG	3 cut(s)	591, 956, 965
BstENI	CCTNNNNNAGG	1 cut(s)	848
BstF5I	GGATG	2 cut(s)	671, 711
BstFNI	CGCG	1 cut(s)	952
BstHHI	GCGC	1 cut(s)	150
BstKTI	GATC	3 cut(s)	116, 136, 307
BstMBI	GATC	3 cut(s)	113, 133, 304
BstNI	CCWGG	5 cut(s)	129, 178, 756, 851, 985
BstNSI	RCATGY	1 cut(s)	422
BstSCI	CCNGG	5 cut(s)	127, 176, 754, 849, 983
BstSLI	GKGCMC	2 cut(s)	271, 925
BstUI	CGCG	1 cut(s)	952
BstV1I	GCAGC	5 cut(s)	132, 160, 391, 512, 649
BstV2I	GAAGAC	1 cut(s)	80
BstZ17I	GTATAC	1 cut(s)	896
BsuRI	GGCC	3 cut(s)	743, 760, 988
BtgZI	GCGATG	1 cut(s)	827
BtsCI	GGATG	2 cut(s)	671, 711
BtsIMutI	CAGTG	2 cut(s)	112, 751
Cac8I	GCNNGC	8 cut(s)	152, 156, 267, 271, 275, 681, 869, 981
CfoI	GCGC	1 cut(s)	150
Cfr10I	RCCGGY	2 cut(s)	186, 228
Cfr13I	GGNCC	2 cut(s)	758, 987
CseI	GACGC	3 cut(s)	151, 602, 941
Csp6I	GTAC	2 cut(s)	209, 441
CviAII	CATG	1 cut(s)	419
CviQI	GTAC	2 cut(s)	209, 441
DdeI	CTNAG	3 cut(s)	591, 956, 965
DpnI	GATC	3 cut(s)	115, 135, 306
DpnII	GATC	3 cut(s)	113, 133, 304
EaeI	YGGCCR	1 cut(s)	741
Eco130I	CCWWGG	2 cut(s)	17, 738
Eco24I	GRGCYC	1 cut(s)	964
Eco57I	CTGAAG	2 cut(s)	245, 705
Eco88I	CYCGRG	2 cut(s)	218, 990
EcoNI	CCTNNNNNAGG	1 cut(s)	848
EcoO109I	RGGNCCY	1 cut(s)	987
EcoRII	CCWGG	5 cut(s)	127, 176, 754, 849, 983
EcoT14I	CCWWGG	2 cut(s)	17, 738
EcoT22I	ATGCAT	1 cut(s)	891
EcoT38I	GRGCYC	1 cut(s)	964
ErhI	CCWWGG	2 cut(s)	17, 738
FaeI	CATG	1 cut(s)	422
FatI	CATG	1 cut(s)	418
FauI	CCCGC	2 cut(s)	278, 415
FauNDI	CATATG	1 cut(s)	205
FblI	GTMKAC	1 cut(s)	895
Fnu4HI	GCNGC	5 cut(s)	146, 174, 405, 501, 638
FokI	GGATG	2 cut(s)	658, 718
FriOI	GRGCYC	1 cut(s)	964
Fsp4HI	GCNGC	5 cut(s)	146, 174, 405, 501, 638
FspBI	CTAG	3 cut(s)	18, 92, 824
FspI	TGCGCA	1 cut(s)	149
GlaI	GCGC	1 cut(s)	149
GluI	GCNGC	5 cut(s)	146, 174, 405, 501, 638
GsaI	CCCAGC	2 cut(s)	247, 679
GsuI	CTGGAG	2 cut(s)	321, 389
HaeIII	GGCC	3 cut(s)	743, 760, 988
HapII	CCGG	2 cut(s)	187, 229
HgaI	GACGC	3 cut(s)	151, 602, 941
HhaI	GCGC	1 cut(s)	150
Hin1II	CATG	1 cut(s)	422
Hin6I	GCGC	1 cut(s)	148
HinP1I	GCGC	1 cut(s)	148
HindIII	AAGCTT	1 cut(s)	602
HinfI	GANTC	2 cut(s)	73, 101
HpaII	CCGG	2 cut(s)	187, 229
HphI	GGTGA	2 cut(s)	437, 744
Hpy166II	GTNNAC	3 cut(s)	752, 896, 923
Hpy188I	TCNGA	3 cut(s)	60, 100, 592
Hpy188III	TCNNGA	6 cut(s)	167, 220, 300, 531, 765, 833
Hpy8I	GTNNAC	3 cut(s)	752, 896, 923
HpyAV	CCTTC	1 cut(s)	854
HpyCH4III	ACNGT	2 cut(s)	445, 558
HpyCH4V	TGCA	6 cut(s)	359, 500, 880, 889, 923, 932
HpyF3I	CTNAG	3 cut(s)	591, 956, 965
Hsp92II	CATG	1 cut(s)	422
HspAI	GCGC	1 cut(s)	148
Kzo9I	GATC	3 cut(s)	113, 133, 304
LmnI	GCTCC	2 cut(s)	373, 634
Lsp1109I	GCAGC	5 cut(s)	132, 160, 391, 512, 649
LweI	GCATC	2 cut(s)	679, 898
MaeI	CTAG	3 cut(s)	18, 92, 824
MaeIII	GTNAC	4 cut(s)	189, 425, 696, 723
MalI	GATC	3 cut(s)	115, 135, 306
MbiI	CCGCTC	1 cut(s)	585
MboI	GATC	3 cut(s)	113, 133, 304
MboII	GAAGA	3 cut(s)	80, 698, 854
MfeI	CAATTG	1 cut(s)	617
MhlI	GDGCHC	4 cut(s)	271, 378, 925, 964
MlsI	TGGCCA	1 cut(s)	743
MluCI	AATT	4 cut(s)	236, 412, 447, 617
MluNI	TGGCCA	1 cut(s)	743
MnlI	CCTC	5 cut(s)	40, 364, 393, 829, 974
Mox20I	TGGCCA	1 cut(s)	743
Mph1103I	ATGCAT	1 cut(s)	891
MscI	TGGCCA	1 cut(s)	743
MseI	TTAA	2 cut(s)	239, 411
MslI	CAYNNNNRTG	2 cut(s)	423, 471
Msp20I	TGGCCA	1 cut(s)	743
MspA1I	CMGCKG	1 cut(s)	551
MspI	CCGG	2 cut(s)	187, 229
MspR9I	CCNGG	5 cut(s)	129, 178, 756, 851, 985
MunI	CAATTG	1 cut(s)	617
MvaI	CCWGG	5 cut(s)	129, 178, 756, 851, 985
MvnI	CGCG	1 cut(s)	952
NdeI	CATATG	1 cut(s)	205
NdeII	GATC	3 cut(s)	113, 133, 304
NlaIII	CATG	1 cut(s)	422
NlaIV	GGNNCC	3 cut(s)	624, 842, 989
NmeAIII	GCCGAG	1 cut(s)	886
NmuCI	GTSAC	3 cut(s)	425, 696, 723
NsbI	TGCGCA	1 cut(s)	149
NsiI	ATGCAT	1 cut(s)	891
NspI	RCATGY	1 cut(s)	422
PaeR7I	CTCGAG	1 cut(s)	218
PfeI	GAWTC	2 cut(s)	73, 101
PkrI	GCNGC	5 cut(s)	147, 175, 406, 502, 639
Psp6I	CCWGG	5 cut(s)	127, 176, 754, 849, 983
PspFI	CCCAGC	2 cut(s)	243, 675
PspGI	CCWGG	5 cut(s)	127, 176, 754, 849, 983
PspN4I	GGNNCC	3 cut(s)	624, 842, 989
PspPI	GGNCC	2 cut(s)	758, 987
RsaI	GTAC	2 cut(s)	210, 442
RsaNI	GTAC	2 cut(s)	209, 441
RseI	CAYNNNNRTG	2 cut(s)	423, 471
SaqAI	TTAA	2 cut(s)	239, 411
SatI	GCNGC	5 cut(s)	146, 174, 405, 501, 638
Sau3AI	GATC	3 cut(s)	113, 133, 304
Sau96I	GGNCC	2 cut(s)	758, 987
ScrFI	CCNGG	5 cut(s)	129, 178, 756, 851, 985
SduI	GDGCHC	4 cut(s)	271, 378, 925, 964
SfaNI	GCATC	2 cut(s)	679, 898
Sfr274I	CTCGAG	1 cut(s)	218
SlaI	CTCGAG	1 cut(s)	218
SmiMI	CAYNNNNRTG	2 cut(s)	423, 471
SmlI	CTYRAG	3 cut(s)	218, 248, 833
SmoI	CTYRAG	3 cut(s)	218, 248, 833
Sse9I	AATT	4 cut(s)	236, 412, 447, 617
SsiI	CCGC	4 cut(s)	271, 422, 551, 583
SspI	AATATT	1 cut(s)	652
SspMI	CTAG	3 cut(s)	18, 92, 824
StyD4I	CCNGG	5 cut(s)	127, 176, 754, 849, 983
StyI	CCWWGG	2 cut(s)	17, 738
TaaI	ACNGT	2 cut(s)	445, 558
TaqI	TCGA	1 cut(s)	219
TasI	AATT	4 cut(s)	236, 412, 447, 617
TatI	WGTACW	1 cut(s)	208
TfiI	GAWTC	2 cut(s)	73, 101
Tru1I	TTAA	2 cut(s)	239, 411
Tru9I	TTAA	2 cut(s)	239, 411
TscAI	CASTG	2 cut(s)	112, 751
TseFI	GTSAC	3 cut(s)	425, 696, 723
TseI	GCWGC	5 cut(s)	145, 173, 404, 500, 637
Tsp45I	GTSAC	3 cut(s)	425, 696, 723
TspDTI	ATGAA	2 cut(s)	277, 662
TspGWI	ACGGA	3 cut(s)	428, 446, 647
TspRI	CASTG	2 cut(s)	112, 751
VneI	GTGCAC	1 cut(s)	921
XagI	CCTNNNNNAGG	1 cut(s)	848
XceI	RCATGY	1 cut(s)	422
XcmI	CCANNNNNNNNNTGG	1 cut(s)	320
XhoI	CTCGAG	1 cut(s)	218
XmaJI	CCTAGG	1 cut(s)	17
XmiI	GTMKAC	1 cut(s)	895
XspI	CTAG	3 cut(s)	18, 92, 824
Zsp2I	ATGCAT	1 cut(s)	891

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.