Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001056

Physical Location & Seq

Genomic Coordinates Reverse (-)

27225843 .. 27228063

Gene Structure 2221 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0258700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGATATATGCCGATTTGCCTTGCATAGTTACCCGCTTTTTCTTCCCTCTTTATCAGTTCTCATCAAGCCTACAATTGTATTGCCATCGTCCTCAAGCTGCCGTCCTAAACTAGCTAAGTTCGCACAGCTGTCACTCATTTACTCGAAACCAACTATTTATACTAAAGTGCGCTGTGCCTCCTCCTATTCTTCATCAGCATCATCGTCAATGGAAGCCCCTCCCGAAGGTTACAGAAGGAATGTTGGTATCTGCCTCATCAATGATTCAAAGAAGATTTTTGCTGCTTCAAGGTTAGATGTACCTGATTCTTGGCAAATGCCGCAAGGTGGCATTGATGAGGGTGAAGATCCAAGAACTGCAGCCATCAGGGAATTAAGAGAAGAGACAGGAGTTCAGTCGGCAGAAATTCTTGCAGAGACACCTAATTGGTTAACCTATGATTTCCCACCAGAAGTTAGGGCAAAACTTCAGAAACAGTGGGGATCAGATTGGAAGGGCCAAGCACAGAAGTGGTTTCTTTTTCGGTTCACTGGGAAGGATGAAGAAGTCAATCTTCTAGGTGATGGCAGTGAAAAACCTGAGTTTGGCGAGTGGTCATGGATAACACCAGAACAAGTAGTTGATCTTGCTGTTGATTTTAAGAAGCCTGTTTACAAAGAAGTTCTTGCAGTTTTCGCACCCTATTTTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1 bZIP_2

Protein Analysis

231

Amino Acids

26.07

Weight (kDa)

5.63

Isoelectric Point (pI)

41.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	78 - 220	3e-24	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12250 AT3G12250 AT3G12250 AT3G12250 AT3G12250 AT3G12250 AT3G12250 AT5G06950 AT5G06950 AT5G06950 AT5G06950 AT5G06950 AT5G06960 AT5G06960 AT5G06960
fragaria_vesca	FvH4_6g25330 FvH4_6g25330 FvH4_6g25330 FvH4_6g25330 FvH4_6g25330 FvH4_6g25330 FvH4_6g25330 FvH4_6g25330 FvH4_7g03530
malus_domestica	MD02G1279400.v1.1 MD07G1047300.v1.1 MD12G1096400.v1.1 MD14G1089200.v1.1
prunus_persica	Prupe.2G041300_v2.0.a1 Prupe.7G037900_v2.0.a1 Prupe.7G037900_v2.0.a1 Prupe.7G037900_v2.0.a1 Prupe.7G037900_v2.0.a1
pyrus_communis	pycom02g23960 pycom07g03420 pycom12g08570 pycom14g07870
rosa_chinensis	RchiOBHm_Chr1g0325831 RchiOBHm_Chr2g0125681
rosa_laevigata	RLG00000018877 RLG00000030099
rosa_multiflora	Rmu_sc0013657.1_g000002 Rmu_ssc0000055.1_g000021
rosa_roxburghii	Rroxscaffold_2G00117830 Rroxscaffold_4G00324240
rosa_rugosa	Rorug01G0055400 Rorug02G0258500 Rorug02G0258600.1 Rorug02G0258700 Rorug02G0258700 Rorug02G0258700
rosa_samantha	Rh1AG071800 Rh1BG058700 Rh1CG071100 Rh1DG075900 Rh2AG317000 Rh2BG324900 Rh2CG306800
rosa_wichuraiana	Rw1G005840 Rw2G025630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	35, 323
AclWI	GGATC	2 cut(s)	344, 493
AcsI	RAATTY	1 cut(s)	408
AcuI	CTGAAG	1 cut(s)	455
AfaI	GTAC	1 cut(s)	303
AfiI	CCNNNNNNNGG	3 cut(s)	227, 329, 587
AgsI	TTSAA	3 cut(s)	270, 291, 692
AleI	CACNNNNGTG	1 cut(s)	511
AluBI	AGCT	3 cut(s)	99, 116, 130
AluI	AGCT	3 cut(s)	99, 116, 130
Alw26I	GTCTC	2 cut(s)	380, 413
AlwI	GGATC	2 cut(s)	344, 493
AoxI	GGCC	1 cut(s)	499
ApeKI	GCWGC	3 cut(s)	99, 284, 362
ApoI	RAATTY	1 cut(s)	408
AspLEI	GCGC	1 cut(s)	174
AspS9I	GGNCC	1 cut(s)	499
AsuHPI	GGTGA	2 cut(s)	356, 575
BarI	GAAGNNNNNNTAC	2 cut(s)	638, 670
BbvI	GCAGC	3 cut(s)	86, 271, 374
BccI	CCATC	3 cut(s)	94, 374, 560
BceAI	ACGGC	1 cut(s)	87
BcoDI	GTCTC	2 cut(s)	380, 413
BfaI	CTAG	2 cut(s)	113, 560
BfmI	CTRYAG	1 cut(s)	360
BisI	GCNGC	4 cut(s)	100, 285, 323, 363
BlsI	GCNGC	4 cut(s)	101, 286, 324, 364
BmgT120I	GGNCC	1 cut(s)	499
BmrI	ACTGGG	1 cut(s)	543
BmsI	GCATC	1 cut(s)	209
BmuI	ACTGGG	1 cut(s)	543
BpuEI	CTTGAG	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	3 cut(s)	227, 329, 587
Bse1I	ACTGG	1 cut(s)	538
BseGI	GGATG	1 cut(s)	547
BseLI	CCNNNNNNNGG	3 cut(s)	227, 329, 587
BseMII	CTCAG	1 cut(s)	573
BseNI	ACTGG	1 cut(s)	538
BseRI	GAGGAG	1 cut(s)	172
BseXI	GCAGC	3 cut(s)	86, 271, 374
BshFI	GGCC	1 cut(s)	501
BslI	CCNNNNNNNGG	3 cut(s)	227, 329, 587
BsmAI	GTCTC	2 cut(s)	380, 413
BsnI	GGCC	1 cut(s)	501
Bsp143I	GATC	3 cut(s)	349, 485, 625
BspACI	CCGC	2 cut(s)	35, 323
BspANI	GGCC	1 cut(s)	501
BspCNI	CTCAG	1 cut(s)	574
BspMAI	CTGCAG	1 cut(s)	364
BspPI	GGATC	2 cut(s)	344, 493
BsrI	ACTGG	1 cut(s)	538
BssMI	GATC	3 cut(s)	349, 485, 625
Bst4CI	ACNGT	1 cut(s)	480
Bst6I	CTCTTC	1 cut(s)	378
BstDEI	CTNAG	2 cut(s)	117, 582
BstENI	CCTNNNNNAGG	1 cut(s)	225
BstF5I	GGATG	1 cut(s)	547
BstHHI	GCGC	1 cut(s)	174
BstKTI	GATC	3 cut(s)	352, 488, 628
BstMAI	GTCTC	2 cut(s)	380, 413
BstMBI	GATC	3 cut(s)	349, 485, 625
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 322, 677
BstSFI	CTRYAG	1 cut(s)	360
BstV1I	GCAGC	3 cut(s)	86, 271, 374
BstX2I	RGATCY	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	349
BsuRI	GGCC	1 cut(s)	501
BtsCI	GGATG	1 cut(s)	547
BtsI	GCAGTG	1 cut(s)	577
BtsIMutI	CAGTG	3 cut(s)	485, 531, 577
CfoI	GCGC	1 cut(s)	174
Cfr13I	GGNCC	1 cut(s)	499
Csp6I	GTAC	1 cut(s)	302
CviAII	CATG	1 cut(s)	600
CviJI	RGCY	8 cut(s)	70, 99, 116, 130, 218, 365, 501, 649
CviKI_1	RGCY	8 cut(s)	70, 99, 116, 130, 218, 365, 501, 649
CviQI	GTAC	1 cut(s)	302
DdeI	CTNAG	2 cut(s)	117, 582
DpnI	GATC	3 cut(s)	351, 487, 627
DpnII	GATC	3 cut(s)	349, 485, 625
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
Eco57I	CTGAAG	1 cut(s)	455
EcoNI	CCTNNNNNAGG	1 cut(s)	225
FaeI	CATG	1 cut(s)	603
FaiI	YATR	6 cut(s)	8, 10, 27, 162, 441, 601
FalI	AAGNNNNNCTT	4 cut(s)	540, 572, 651, 683
FatI	CATG	1 cut(s)	599
FauI	CCCGC	1 cut(s)	42
Fnu4HI	GCNGC	4 cut(s)	100, 285, 323, 363
FokI	GGATG	1 cut(s)	554
Fsp4HI	GCNGC	4 cut(s)	100, 285, 323, 363
FspBI	CTAG	2 cut(s)	113, 560
GlaI	GCGC	1 cut(s)	173
GluI	GCNGC	4 cut(s)	100, 285, 323, 363
HaeIII	GGCC	1 cut(s)	501
HhaI	GCGC	1 cut(s)	174
Hin1II	CATG	1 cut(s)	603
Hin6I	GCGC	1 cut(s)	172
HinP1I	GCGC	1 cut(s)	172
HincII	GTYRAC	1 cut(s)	435
HindII	GTYRAC	1 cut(s)	435
HinfI	GANTC	2 cut(s)	266, 308
HpaI	GTTAAC	1 cut(s)	435
HphI	GGTGA	2 cut(s)	356, 575
Hpy166II	GTNNAC	3 cut(s)	435, 531, 655
Hpy188I	TCNGA	2 cut(s)	474, 490
Hpy188III	TCNNGA	1 cut(s)	224
Hpy8I	GTNNAC	3 cut(s)	435, 531, 655
HpyAV	CCTTC	4 cut(s)	221, 231, 490, 532
HpyCH4III	ACNGT	1 cut(s)	480
HpyCH4V	TGCA	4 cut(s)	25, 362, 416, 671
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 322, 677
HpyF3I	CTNAG	2 cut(s)	117, 582
Hsp92II	CATG	1 cut(s)	603
HspAI	GCGC	1 cut(s)	172
KspAI	GTTAAC	1 cut(s)	435
Kzo9I	GATC	3 cut(s)	349, 485, 625
LpnPI	CCDG	8 cut(s)	318, 355, 375, 465, 519, 594, 624, 663
Lsp1109I	GCAGC	3 cut(s)	86, 271, 374
LweI	GCATC	1 cut(s)	209
MaeI	CTAG	2 cut(s)	113, 560
MaeIII	GTNAC	3 cut(s)	29, 132, 230
MalI	GATC	3 cut(s)	351, 487, 627
MboI	GATC	3 cut(s)	349, 485, 625
MboII	GAAGA	7 cut(s)	35, 183, 286, 359, 395, 548, 557
MfeI	CAATTG	1 cut(s)	75
MflI	RGATCY	1 cut(s)	349
MluCI	AATT	4 cut(s)	75, 374, 408, 427
MnlI	CCTC	7 cut(s)	58, 103, 190, 193, 231, 266, 334
MseI	TTAA	3 cut(s)	377, 434, 642
MslI	CAYNNNNRTG	1 cut(s)	511
MspA1I	CMGCKG	1 cut(s)	130
MunI	CAATTG	1 cut(s)	75
MwoI	GCNNNNNNNGC	3 cut(s)	122, 322, 677
NdeII	GATC	3 cut(s)	349, 485, 625
NlaIII	CATG	1 cut(s)	603
NmuCI	GTSAC	1 cut(s)	132
OliI	CACNNNNGTG	1 cut(s)	511
PfeI	GAWTC	2 cut(s)	266, 308
PkrI	GCNGC	4 cut(s)	101, 286, 324, 364
PspPI	GGNCC	1 cut(s)	499
PstI	CTGCAG	1 cut(s)	364
PsuI	RGATCY	1 cut(s)	349
PvuII	CAGCTG	1 cut(s)	130
RsaI	GTAC	1 cut(s)	303
RsaNI	GTAC	1 cut(s)	302
RseI	CAYNNNNRTG	1 cut(s)	511
SaqAI	TTAA	3 cut(s)	377, 434, 642
SatI	GCNGC	4 cut(s)	100, 285, 323, 363
Sau3AI	GATC	3 cut(s)	349, 485, 625
Sau96I	GGNCC	1 cut(s)	499
SfaNI	GCATC	1 cut(s)	209
SfcI	CTRYAG	1 cut(s)	360
SmiMI	CAYNNNNRTG	1 cut(s)	511
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
Sse9I	AATT	4 cut(s)	75, 374, 408, 427
SsiI	CCGC	2 cut(s)	35, 323
SspMI	CTAG	2 cut(s)	113, 560
TaaI	ACNGT	1 cut(s)	480
TaqI	TCGA	1 cut(s)	146
TasI	AATT	4 cut(s)	75, 374, 408, 427
TauI	GCSGC	1 cut(s)	325
TfiI	GAWTC	2 cut(s)	266, 308
Tru1I	TTAA	3 cut(s)	377, 434, 642
Tru9I	TTAA	3 cut(s)	377, 434, 642
TscAI	CASTG	3 cut(s)	485, 538, 577
TseFI	GTSAC	1 cut(s)	132
TseI	GCWGC	3 cut(s)	99, 284, 362
Tsp45I	GTSAC	1 cut(s)	132
TspDTI	ATGAA	2 cut(s)	183, 558
TspRI	CASTG	3 cut(s)	485, 538, 577
XagI	CCTNNNNNAGG	1 cut(s)	225
XapI	RAATTY	1 cut(s)	408
XspI	CTAG	2 cut(s)	113, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.