Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001056

Physical Location & Seq

Genomic Coordinates Reverse (-)

9050554 .. 9064003

Gene Structure 13450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0055400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2055 bp

ATGAGCTGTGGCGGCTTCACAGTTCCGAAGGGATACCGATTCCATCCCTCCGACGAGGAGCTGCTTAGTCACTACTTGGAGGAGAAGAATCAGTGCAAGGACTCCCAGATCACTACCATCATCCCTGAAATCGATGTGTGCAAGCACGAGCCTCGCGAATTGCCAGAACTGGCGTTCACAAGGGCGGAAAGTCTGGGCAGGAAATTTTTCTTTTTCTTCTTCTTTTGGTTTGCAAGGGAAGTGTCTTGGGACAATCAGGGAAAGTTGTACTTCTTCACTCGGCGTGATTACAAGTACAACAACAGCACTCGCTCCAACAGGACTACAGGGGAAGGGTTTTGGAAGATCACAGGCAAGGACCGTGCAATCAAGGCCCCCGGCTCCAAAGCTGTGATTGGGAGAAAGAGGACATTGACCTTCTACAAACGTGGAGTGCCGAAATCCCAGAAGACCAGCTGGGTTATTCATGAGTATTATCTCATTCAGGCACATTCTGATCCTCCTAAGCAGATAGGGGACTTTGTTGTCTGCTGCTTGAAGTACAAGTCAGACAACTCTGATTATGATAAGGATGCCCCATTCTGCGATCGAGGTAGCAGTAGCTGCAAAATGGCCTCCAATGTTGAAAATCAAGCTAAAGAAAACTGGGCATCGGAAGAGCTGGTAAATGTTGTTCCAATTCCCAGTGGAAATGATGATGAAACTGGTGGTGGTATGATTACAGAAGAAGAGGAATACCTGACTTTAGAGGAGGTGGAAGAAATTCTTCACATTCCCATTGGCAATCCGCATGAATTTGAAGGCACGCAAACTGATCCTTGTCGTATAGATAAGAATGATCCTTCAACTGCTGTTGAACGCCAACCTGATAGAAGCAATTCATCTGATATGATTGAAGAGCTACTAGATGACCCAGAAAATCTGGATTCACTCTTTCATCCGCCTGCACCACCTCAACTGCATCAGTCACCGATGCATACCACCAACATCCATAATGATGAATGTCGTAAGAGGACATATCCATTTGAGGATAATGACCCTTCTCTTACGAAGAAGAATAATATCTCAACCAATGATAACGACGAATTAGTTAGCAACATCGCATCTAGTTCTGAAAATCAAGCCGCAAATATGATTCCAGAGTTAATCACAATAACCTGCGCACTAAAAACTGGTCAGCTATTGAATAACATTGGGAATCTTCTCGGGGGCTATTTGGATTATGACAAGAAGGAGTTCCGTAAAGGTAGCATCCATATCCTGTTCTCTCATGATGTTTCTAAACCCGTTCTGTTGGAGCGTCGAGTGTTCTTGGCTCCAGGTGTTGAGTCGATATTGCAATTCCACTTTGAACATCTCAAGGGTCGCTGCCCTCATTGTGGACTGGTTACGCACGCTGGAGAGAAGTGTGAGGAACCCAATACTGTTATTTCGACCCCTAGGGTTTTGAACTTTGGTGGTAGTCATGTCACCTCCGGCGGCATTTTCTCCTTCTCAGCCCAGAATAGTCGGGATCTGCCTATGCCCTCGTCTACCCTACTGAAGAAGAAGACGAAACCAGTTATTCGGCGAATGGAAAGATCATCTTCTAAATCTGCTGCTCAGGAAGATACCGTGGCTAACACGATAGAGTTGGTCAATATGAACTGTGATGCTGGGTTACAGGATCAGGCCACTGCGTTGGTTTCGATGGCAGCGTCTGAATCTGGGTCAGATGACCTAACTGCTGCTACTGGGACTCCTGTGGAGCAGCAAATCTTGACCTACAAGAAGCGAGGGCGACAGGAAGCTTGTGTTCCCTCACCGAAGAAGTTCAAGACTATCTTGGGGGGTAAGATACTCACTTTGCATGCTAATGCCCTTGGATTAGTTGAAGCTGAGGATGATGTTGCTCTTGTGAAGTTGAAGAAGAAGACTGGTAGGCCTCTTGGAAGTAAGAACAAGGGCCCTAGGTCCCAAAAAAAGGTGGGGATAACTCCTCTACGCCTCACCTATCCATCCGCTACTACTGCTCAGCAAGCTGGCCCTAAGGATAAGGGCAAAGGAAAACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045087 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046677 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1 bZIP_2

Protein Analysis

684

Amino Acids

76.25

Weight (kDa)

6.7

Isoelectric Point (pI)

51.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	9 - 159	6.9e-31	No apical meristem (NAM) protein
zf-CCHC_4	PF14392	425 - 471	1.9e-07	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12250 AT3G12250 AT3G12250 AT3G12250 AT3G12250 AT3G12250 AT3G12250 AT5G06950 AT5G06950 AT5G06950 AT5G06950 AT5G06950 AT5G06960 AT5G06960 AT5G06960
fragaria_vesca	FvH4_6g25330 FvH4_6g25330 FvH4_6g25330 FvH4_6g25330 FvH4_6g25330 FvH4_6g25330 FvH4_6g25330 FvH4_6g25330 FvH4_7g03530
malus_domestica	MD02G1279400.v1.1 MD07G1047300.v1.1 MD12G1096400.v1.1 MD14G1089200.v1.1
prunus_persica	Prupe.2G041300_v2.0.a1 Prupe.7G037900_v2.0.a1 Prupe.7G037900_v2.0.a1 Prupe.7G037900_v2.0.a1 Prupe.7G037900_v2.0.a1
pyrus_communis	pycom02g23960 pycom07g03420 pycom12g08570 pycom14g07870
rosa_chinensis	RchiOBHm_Chr1g0325831 RchiOBHm_Chr2g0125681
rosa_laevigata	RLG00000018877 RLG00000030099
rosa_multiflora	Rmu_sc0013657.1_g000002 Rmu_ssc0000055.1_g000021
rosa_roxburghii	Rroxscaffold_2G00117830 Rroxscaffold_4G00324240
rosa_rugosa	Rorug01G0055400 Rorug02G0258500 Rorug02G0258600.1 Rorug02G0258700 Rorug02G0258700 Rorug02G0258700
rosa_samantha	Rh1AG071800 Rh1BG058700 Rh1CG071100 Rh1DG075900 Rh2AG317000 Rh2BG324900 Rh2CG306800
rosa_wichuraiana	Rw1G005840 Rw2G025630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	524
Acc16I	TGCGCA	1 cut(s)	1162
Acc36I	ACCTGC	1 cut(s)	1166
AccI	GTMKAC	1 cut(s)	1532
AccII	CGCG	1 cut(s)	156
AciI	CCGC	7 cut(s)	12, 185, 788, 941, 1125, 1479, 2001
AclWI	GGATC	5 cut(s)	491, 809, 833, 1521, 1674
AcsI	RAATTY	3 cut(s)	203, 762, 794
AcuI	CTGAAG	1 cut(s)	1562
AfaI	GTAC	3 cut(s)	269, 296, 542
AfiI	CCNNNNNNNGG	2 cut(s)	1379, 1963
AjnI	CCWGG	1 cut(s)	1318
AlwI	GGATC	5 cut(s)	491, 809, 833, 1521, 1674
AlwNI	CAGNNNCTG	2 cut(s)	603, 1700
Ama87I	CYCGRG	1 cut(s)	1205
AoxI	GGCC	6 cut(s)	372, 612, 1671, 1922, 1945, 2023
ApaI	GGGCCC	1 cut(s)	1949
ApeKI	GCWGC	8 cut(s)	61, 531, 603, 1368, 1598, 1694, 1727, 1750
ApoI	RAATTY	3 cut(s)	203, 762, 794
Asp700I	GAANNNNTTC	6 cut(s)	206, 762, 765, 877, 1235, 1811
AspA2I	CCTAGG	2 cut(s)	1439, 1949
AspLEI	GCGC	1 cut(s)	1163
AspS9I	GGNCC	6 cut(s)	358, 373, 1945, 1946, 1953, 2024
AsuC2I	CCSGG	1 cut(s)	378
AsuHPI	GGTGA	4 cut(s)	960, 1462, 1794, 1981
AvaI	CYCGRG	1 cut(s)	1205
AvaII	GGWCC	2 cut(s)	358, 1953
AvrII	CCTAGG	2 cut(s)	1439, 1949
AxyI	CCTNAGG	1 cut(s)	2028
BaeGI	GKGCMC	1 cut(s)	1949
BanII	GRGCYC	1 cut(s)	1949
BauI	CACGAG	1 cut(s)	146
BbsI	GAAGAC	3 cut(s)	455, 1556, 1919
BbvCI	CCTCAGC	1 cut(s)	1878
BbvI	GCAGC	8 cut(s)	48, 518, 590, 1355, 1585, 1706, 1714, 1762
BccI	CCATC	4 cut(s)	51, 125, 1684, 2005
BcgI	CGANNNNNNTGC	2 cut(s)	134, 168
BciT130I	CCWGG	1 cut(s)	1320
BciVI	GTATCC	1 cut(s)	26
BcnI	CCSGG	1 cut(s)	378
BfaI	CTAG	5 cut(s)	905, 1107, 1440, 1950, 2053
BfmI	CTRYAG	1 cut(s)	324
BfuAI	ACCTGC	1 cut(s)	1166
BfuI	GTATCC	1 cut(s)	26
BlnI	CCTAGG	2 cut(s)	1439, 1949
BlpI	GCTNAGC	1 cut(s)	2013
Bme1390I	CCNGG	2 cut(s)	378, 1320
Bme18I	GGWCC	2 cut(s)	358, 1953
BmeT110I	CYCGRG	1 cut(s)	1205
BmgT120I	GGNCC	6 cut(s)	358, 373, 1945, 1946, 1953, 2024
BmiI	GGNNCC	6 cut(s)	375, 382, 1317, 1416, 1947, 1955
BmrFI	CCNGG	2 cut(s)	378, 1320
BmrI	ACTGGG	3 cut(s)	655, 678, 1743
BmsI	GCATC	7 cut(s)	562, 659, 963, 970, 1112, 1260, 1642
BmuI	ACTGGG	3 cut(s)	655, 678, 1743
BpiI	GAAGAC	3 cut(s)	455, 1556, 1919
BpmI	CTGGAG	2 cut(s)	1302, 1419
Bpu10I	CCTNAGC	3 cut(s)	504, 1602, 1878
Bpu1102I	GCTNAGC	1 cut(s)	2013
BpuEI	CTTGAG	1 cut(s)	1343
BpuMI	CCSGG	1 cut(s)	378
Bsa29I	ATCGAT	1 cut(s)	132
BsaJI	CCNNGG	5 cut(s)	376, 1439, 1614, 1861, 1949
BsaXI	ACNNNNNCTCC	2 cut(s)	1723, 1753
Bsc4I	CCNNNNNNNGG	2 cut(s)	1379, 1963
Bse1I	ACTGG	9 cut(s)	174, 650, 684, 709, 1177, 1389, 1559, 1738, 1921
Bse21I	CCTNAGG	1 cut(s)	2028
BseBI	CCWGG	1 cut(s)	1320
BseCI	ATCGAT	1 cut(s)	132
BseDI	CCNNGG	5 cut(s)	376, 1439, 1614, 1861, 1949
BseGI	GGATG	8 cut(s)	43, 120, 577, 937, 987, 1251, 1888, 1997
BseLI	CCNNNNNNNGG	2 cut(s)	1379, 1963
BseMII	CTCAG	4 cut(s)	1509, 1616, 1869, 2027
BseNI	ACTGG	9 cut(s)	174, 650, 684, 709, 1177, 1389, 1559, 1738, 1921
BseRI	GAGGAG	4 cut(s)	71, 95, 764, 1968
BseSI	GKGCMC	1 cut(s)	1949
BseXI	GCAGC	8 cut(s)	48, 518, 590, 1355, 1585, 1706, 1714, 1762
BseYI	CCCAGC	2 cut(s)	456, 1655
BsgI	GTGCAG	1 cut(s)	930
Bsh1236I	CGCG	1 cut(s)	156
Bsh1285I	CGRYCG	1 cut(s)	589
BshFI	GGCC	6 cut(s)	374, 614, 1673, 1924, 1947, 2025
BshVI	ATCGAT	1 cut(s)	132
BsiEI	CGRYCG	1 cut(s)	589
BsiHKCI	CYCGRG	1 cut(s)	1205
BsiSI	CCGG	2 cut(s)	378, 1476
BslFI	GGGAC	4 cut(s)	263, 530, 1750, 1939
BslI	CCNNNNNNNGG	2 cut(s)	1379, 1963
BsmFI	GGGAC	4 cut(s)	263, 530, 1750, 1939
BsnI	GGCC	6 cut(s)	374, 614, 1673, 1924, 1947, 2025
BsoBI	CYCGRG	1 cut(s)	1205
Bsp120I	GGGCCC	1 cut(s)	1945
Bsp1286I	GDGCHC	1 cut(s)	1949
Bsp143I	GATC	9 cut(s)	108, 345, 496, 586, 814, 838, 1513, 1580, 1666
Bsp1720I	GCTNAGC	1 cut(s)	2013
Bsp68I	TCGCGA	1 cut(s)	156
BspACI	CCGC	7 cut(s)	12, 185, 788, 941, 1125, 1479, 2001
BspANI	GGCC	6 cut(s)	374, 614, 1673, 1924, 1947, 2025
BspCNI	CTCAG	4 cut(s)	1508, 1615, 1870, 2026
BspDI	ATCGAT	1 cut(s)	132
BspFNI	CGCG	1 cut(s)	156
BspHI	TCATGA	2 cut(s)	466, 1270
BspLI	GGNNCC	6 cut(s)	375, 382, 1317, 1416, 1947, 1955
BspMI	ACCTGC	1 cut(s)	1166
BspPI	GGATC	5 cut(s)	491, 809, 833, 1521, 1674
BspQI	GCTCTTC	2 cut(s)	651, 891
BsrI	ACTGG	9 cut(s)	174, 650, 684, 709, 1177, 1389, 1559, 1738, 1921
BssECI	CCNNGG	5 cut(s)	376, 1439, 1614, 1861, 1949
BssMI	GATC	9 cut(s)	108, 345, 496, 586, 814, 838, 1513, 1580, 1666
BssSI	CACGAG	1 cut(s)	146
BssT1I	CCWWGG	3 cut(s)	1439, 1861, 1949
Bst2BI	CACGAG	1 cut(s)	146
Bst2UI	CCWGG	1 cut(s)	1320
Bst4CI	ACNGT	5 cut(s)	22, 362, 1426, 1615, 1649
Bst6I	CTCTTC	3 cut(s)	651, 723, 891
BstAPI	GCANNNNNTGC	1 cut(s)	603
BstC8I	GCNNGC	7 cut(s)	143, 806, 945, 1395, 1851, 2019, 2023
BstDEI	CTNAG	7 cut(s)	65, 504, 1495, 1602, 1878, 2013, 2028
BstDSI	CCRYGG	1 cut(s)	1614
BstF5I	GGATG	8 cut(s)	43, 120, 577, 937, 987, 1251, 1888, 1997
BstFNI	CGCG	1 cut(s)	156
BstHHI	GCGC	1 cut(s)	1163
BstKTI	GATC	9 cut(s)	111, 348, 499, 589, 817, 841, 1516, 1583, 1669
BstMBI	GATC	9 cut(s)	108, 345, 496, 586, 814, 838, 1513, 1580, 1666
BstMCI	CGRYCG	1 cut(s)	589
BstMWI	GCNNNNNNNGC	5 cut(s)	12, 371, 603, 2009, 2018
BstNI	CCWGG	1 cut(s)	1320
BstNSI	RCATGY	1 cut(s)	1853
BstSCI	CCNGG	2 cut(s)	376, 1318
BstSFI	CTRYAG	1 cut(s)	324
BstSLI	GKGCMC	1 cut(s)	1949
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	8 cut(s)	48, 518, 590, 1355, 1585, 1706, 1714, 1762
BstV2I	GAAGAC	3 cut(s)	455, 1556, 1919
BstX2I	RGATCY	1 cut(s)	1513
BstXI	CCANNNNNNTGG	1 cut(s)	1681
BstYI	RGATCY	1 cut(s)	1513
Bsu15I	ATCGAT	1 cut(s)	132
Bsu36I	CCTNAGG	1 cut(s)	2028
BsuI	GTATCC	1 cut(s)	26
BsuRI	GGCC	6 cut(s)	374, 614, 1673, 1924, 1947, 2025
BsuTUI	ATCGAT	1 cut(s)	132
BtgI	CCRYGG	1 cut(s)	1614
BtgZI	GCGATG	1 cut(s)	1084
BtsCI	GGATG	8 cut(s)	43, 120, 577, 937, 987, 1251, 1888, 1997
BtsI	GCAGTG	1 cut(s)	1674
BtsIMutI	CAGTG	3 cut(s)	98, 691, 1674
BtuMI	TCGCGA	1 cut(s)	156
BveI	ACCTGC	1 cut(s)	1166
Cac8I	GCNNGC	7 cut(s)	143, 806, 945, 1395, 1851, 2019, 2023
CaiI	CAGNNNCTG	2 cut(s)	603, 1700
CciI	TCATGA	2 cut(s)	466, 1270
CfoI	GCGC	1 cut(s)	1163
Cfr13I	GGNCC	6 cut(s)	358, 373, 1945, 1946, 1953, 2024
ClaI	ATCGAT	1 cut(s)	132
CseI	GACGC	2 cut(s)	1289, 1686
Csp6I	GTAC	3 cut(s)	268, 295, 541
CviAII	CATG	5 cut(s)	467, 791, 1271, 1466, 1850
CviQI	GTAC	3 cut(s)	268, 295, 541
DdeI	CTNAG	7 cut(s)	65, 504, 1495, 1602, 1878, 2013, 2028
DpnI	GATC	9 cut(s)	110, 347, 498, 588, 816, 840, 1515, 1582, 1668
DpnII	GATC	9 cut(s)	108, 345, 496, 586, 814, 838, 1513, 1580, 1666
DrdI	GACNNNNNNGTC	1 cut(s)	524
DseDI	GACNNNNNNGTC	1 cut(s)	524
Eam1104I	CTCTTC	3 cut(s)	651, 723, 891
EarI	CTCTTC	3 cut(s)	651, 723, 891
EciI	GGCGGA	2 cut(s)	200, 930
Eco130I	CCWWGG	3 cut(s)	1439, 1861, 1949
Eco147I	AGGCCT	1 cut(s)	1924
Eco24I	GRGCYC	1 cut(s)	1949
Eco47I	GGWCC	2 cut(s)	358, 1953
Eco57I	CTGAAG	1 cut(s)	1562
Eco81I	CCTNAGG	1 cut(s)	2028
Eco88I	CYCGRG	1 cut(s)	1205
EcoO109I	RGGNCCY	4 cut(s)	373, 1945, 1946, 1953
EcoRII	CCWGG	1 cut(s)	1318
EcoT14I	CCWWGG	3 cut(s)	1439, 1861, 1949
EcoT22I	ATGCAT	1 cut(s)	978
EcoT38I	GRGCYC	1 cut(s)	1949
ErhI	CCWWGG	3 cut(s)	1439, 1861, 1949
FaeI	CATG	5 cut(s)	470, 794, 1274, 1469, 1853
FalI	AAGNNNNNCTT	8 cut(s)	254, 286, 750, 782, 1570, 1602, 1808, 1840
FaqI	GGGAC	4 cut(s)	263, 530, 1750, 1939
FatI	CATG	5 cut(s)	466, 790, 1270, 1465, 1849
FblI	GTMKAC	1 cut(s)	1532
FokI	GGATG	8 cut(s)	30, 107, 584, 924, 974, 1238, 1895, 1984
FriOI	GRGCYC	1 cut(s)	1949
FspBI	CTAG	5 cut(s)	905, 1107, 1440, 1950, 2053
FspI	TGCGCA	1 cut(s)	1162
GlaI	GCGC	1 cut(s)	1162
GsaI	CCCAGC	2 cut(s)	460, 1659
GsuI	CTGGAG	2 cut(s)	1302, 1419
HaeIII	GGCC	6 cut(s)	374, 614, 1673, 1924, 1947, 2025
HapII	CCGG	2 cut(s)	378, 1476
HgaI	GACGC	2 cut(s)	1289, 1686
HhaI	GCGC	1 cut(s)	1163
Hin1II	CATG	5 cut(s)	470, 794, 1274, 1469, 1853
Hin6I	GCGC	1 cut(s)	1161
HinP1I	GCGC	1 cut(s)	1161
HindIII	AAGCTT	1 cut(s)	1788
HinfI	GANTC	9 cut(s)	39, 88, 101, 926, 1135, 1198, 1328, 1703, 1738
HpaII	CCGG	2 cut(s)	378, 1476
HphI	GGTGA	4 cut(s)	960, 1462, 1794, 1981
Hpy166II	GTNNAC	3 cut(s)	177, 1382, 1533
Hpy188III	TCNNGA	9 cut(s)	155, 467, 923, 1139, 1271, 1511, 1604, 1759, 1816
Hpy8I	GTNNAC	3 cut(s)	177, 1382, 1533
Hpy99I	CGWCG	3 cut(s)	56, 1085, 1305
HpyAV	CCTTC	8 cut(s)	22, 326, 427, 794, 852, 1050, 1225, 1501
HpyCH4III	ACNGT	5 cut(s)	22, 362, 1426, 1615, 1649
HpyCH4IV	ACGT	1 cut(s)	427
HpyF10VI	GCNNNNNNNGC	5 cut(s)	12, 371, 603, 2009, 2018
HpyF3I	CTNAG	7 cut(s)	65, 504, 1495, 1602, 1878, 2013, 2028
HpySE526I	ACGT	1 cut(s)	427
Hsp92II	CATG	5 cut(s)	470, 794, 1274, 1469, 1853
HspAI	GCGC	1 cut(s)	1161
Kzo9I	GATC	9 cut(s)	108, 345, 496, 586, 814, 838, 1513, 1580, 1666
LguI	GCTCTTC	2 cut(s)	651, 891
LmnI	GCTCC	6 cut(s)	58, 317, 386, 1297, 1321, 1747
Lsp1109I	GCAGC	8 cut(s)	48, 518, 590, 1355, 1585, 1706, 1714, 1762
LweI	GCATC	7 cut(s)	562, 659, 963, 970, 1112, 1260, 1642
MaeI	CTAG	5 cut(s)	905, 1107, 1440, 1950, 2053
MaeII	ACGT	1 cut(s)	427
MaeIII	GTNAC	5 cut(s)	68, 966, 1387, 1468, 1659
MalI	GATC	9 cut(s)	110, 347, 498, 588, 816, 840, 1515, 1582, 1668
MboI	GATC	9 cut(s)	108, 345, 496, 586, 814, 838, 1513, 1580, 1666
MflI	RGATCY	1 cut(s)	1513
MhlI	GDGCHC	1 cut(s)	1949
MluCI	AATT	8 cut(s)	158, 203, 678, 762, 794, 877, 1085, 1340
MlyI	GAGTC	3 cut(s)	95, 1337, 1732
MmeI	TCCRAC	3 cut(s)	75, 339, 1275
Mph1103I	ATGCAT	1 cut(s)	978
MroXI	GAANNNNTTC	6 cut(s)	206, 762, 765, 877, 1235, 1811
MseI	TTAA	1 cut(s)	1145
MslI	CAYNNNNRTG	2 cut(s)	996, 1854
MspA1I	CMGCKG	1 cut(s)	456
MspI	CCGG	2 cut(s)	378, 1476
MspR9I	CCNGG	2 cut(s)	378, 1320
MvaI	CCWGG	1 cut(s)	1320
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	5 cut(s)	12, 371, 603, 2009, 2018
NciI	CCSGG	1 cut(s)	378
NdeII	GATC	9 cut(s)	108, 345, 496, 586, 814, 838, 1513, 1580, 1666
NlaIII	CATG	5 cut(s)	470, 794, 1274, 1469, 1853
NlaIV	GGNNCC	6 cut(s)	375, 382, 1317, 1416, 1947, 1955
NmeAIII	GCCGAG	1 cut(s)	259
NmuCI	GTSAC	3 cut(s)	68, 966, 1468
NruI	TCGCGA	1 cut(s)	156
NsbI	TGCGCA	1 cut(s)	1162
NsiI	ATGCAT	1 cut(s)	978
NspI	RCATGY	1 cut(s)	1853
PaeI	GCATGC	1 cut(s)	1853
PagI	TCATGA	2 cut(s)	466, 1270
PceI	AGGCCT	1 cut(s)	1924
PciSI	GCTCTTC	2 cut(s)	651, 891
PcsI	WCGNNNNNNNCGW	2 cut(s)	153, 1694
PdmI	GAANNNNTTC	6 cut(s)	206, 762, 765, 877, 1235, 1811
PfeI	GAWTC	6 cut(s)	39, 88, 926, 1135, 1198, 1703
Ple19I	CGATCG	1 cut(s)	589
PleI	GAGTC	3 cut(s)	95, 1336, 1732
PpsI	GAGTC	3 cut(s)	95, 1336, 1732
PpuMI	RGGWCCY	1 cut(s)	1953
Psp5II	RGGWCCY	1 cut(s)	1953
Psp6I	CCWGG	1 cut(s)	1318
PspFI	CCCAGC	2 cut(s)	456, 1655
PspGI	CCWGG	1 cut(s)	1318
PspN4I	GGNNCC	6 cut(s)	375, 382, 1317, 1416, 1947, 1955
PspOMI	GGGCCC	1 cut(s)	1945
PspPI	GGNCC	6 cut(s)	358, 373, 1945, 1946, 1953, 2024
PspPPI	RGGWCCY	1 cut(s)	1953
PsrI	GAACNNNNNNTAC	2 cut(s)	657, 689
PstNI	CAGNNNCTG	2 cut(s)	603, 1700
PsuI	RGATCY	1 cut(s)	1513
PvuI	CGATCG	1 cut(s)	589
PvuII	CAGCTG	1 cut(s)	456
RruI	TCGCGA	1 cut(s)	156
RsaI	GTAC	3 cut(s)	269, 296, 542
RsaNI	GTAC	3 cut(s)	268, 295, 541
RseI	CAYNNNNRTG	2 cut(s)	996, 1854
SapI	GCTCTTC	2 cut(s)	651, 891
SaqAI	TTAA	1 cut(s)	1145
Sau3AI	GATC	9 cut(s)	108, 345, 496, 586, 814, 838, 1513, 1580, 1666
Sau96I	GGNCC	6 cut(s)	358, 373, 1945, 1946, 1953, 2024
SchI	GAGTC	3 cut(s)	95, 1337, 1732
ScrFI	CCNGG	2 cut(s)	378, 1320
SduI	GDGCHC	1 cut(s)	1949
SfaNI	GCATC	7 cut(s)	562, 659, 963, 970, 1112, 1260, 1642
SfcI	CTRYAG	1 cut(s)	324
SinI	GGWCC	2 cut(s)	358, 1953
SmiMI	CAYNNNNRTG	2 cut(s)	996, 1854
SmlI	CTYRAG	1 cut(s)	1358
SmoI	CTYRAG	1 cut(s)	1358
SphI	GCATGC	1 cut(s)	1853
Sse9I	AATT	8 cut(s)	158, 203, 678, 762, 794, 877, 1085, 1340
SseBI	AGGCCT	1 cut(s)	1924
SsiI	CCGC	7 cut(s)	12, 185, 788, 941, 1125, 1479, 2001
SspMI	CTAG	5 cut(s)	905, 1107, 1440, 1950, 2053
StuI	AGGCCT	1 cut(s)	1924
StyD4I	CCNGG	2 cut(s)	376, 1318
StyI	CCWWGG	3 cut(s)	1439, 1861, 1949
TaaI	ACNGT	5 cut(s)	22, 362, 1426, 1615, 1649
TaiI	ACGT	1 cut(s)	430
TaqI	TCGA	6 cut(s)	132, 589, 1303, 1331, 1433, 1688
TasI	AATT	8 cut(s)	158, 203, 678, 762, 794, 877, 1085, 1340
TatI	WGTACW	3 cut(s)	267, 294, 540
TauI	GCSGC	3 cut(s)	15, 1127, 1482
TfiI	GAWTC	6 cut(s)	39, 88, 926, 1135, 1198, 1703
Tru1I	TTAA	1 cut(s)	1145
Tru9I	TTAA	1 cut(s)	1145
TscAI	CASTG	3 cut(s)	98, 691, 1681
TseFI	GTSAC	3 cut(s)	68, 966, 1468
TseI	GCWGC	8 cut(s)	61, 531, 603, 1368, 1598, 1694, 1727, 1750
Tsp45I	GTSAC	3 cut(s)	68, 966, 1468
TspDTI	ATGAA	7 cut(s)	455, 714, 807, 870, 926, 1014, 1658
TspGWI	ACGGA	1 cut(s)	1229
TspRI	CASTG	3 cut(s)	98, 691, 1681
VpaK11BI	GGWCC	2 cut(s)	358, 1953
XapI	RAATTY	3 cut(s)	203, 762, 794
XceI	RCATGY	1 cut(s)	1853
XmaJI	CCTAGG	2 cut(s)	1439, 1949
XmiI	GTMKAC	1 cut(s)	1532
XmnI	GAANNNNTTC	6 cut(s)	206, 762, 765, 877, 1235, 1811
XspI	CTAG	5 cut(s)	905, 1107, 1440, 1950, 2053
Zsp2I	ATGCAT	1 cut(s)	978

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.