TGACG-sequence-specific DNA-binding protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rx_N | PF18052 | 9 - 93 | 6.7e-19 | Rx N-terminal domain |
| NB-ARC | PF00931 | 178 - 356 | 1.1e-30 | NB-ARC domain |
| WHD_DRP | PF23559 | 440 - 510 | 1.1e-20 | Disease resistance protein Winged helix domain |
| LRR_14 | PF23598 | 577 - 776 | 5.9e-29 | Leucine-rich repeat region |
| LRR_RPS2 | PF23247 | 604 - 735 | 2.1e-07 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
| LRR_R13L1-DRL21 | PF25019 | 746 - 804 | 9.5e-07 | R13L1/DRL21 LRRs |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1493 |
| AbsI | CCTCGAGG | 2 cut(s) | 2238, 2390 |
| AccB1I | GGYRCC | 1 cut(s) | 83 |
| AccI | GTMKAC | 2 cut(s) | 276, 996 |
| AccII | CGCG | 1 cut(s) | 2624 |
| AciI | CCGC | 3 cut(s) | 259, 1756, 2438 |
| AclWI | GGATC | 5 cut(s) | 976, 1422, 1485, 2080, 2627 |
| AcoI | YGGCCR | 1 cut(s) | 2607 |
| AcsI | RAATTY | 3 cut(s) | 682, 1337, 2266 |
| AcuI | CTGAAG | 2 cut(s) | 331, 2195 |
| AcyI | GRCGYC | 2 cut(s) | 2020, 2644 |
| AfaI | GTAC | 4 cut(s) | 306, 336, 1553, 2627 |
| AfeI | AGCGCT | 1 cut(s) | 1085 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 78, 615, 1013, 2616 |
| AhlI | ACTAGT | 1 cut(s) | 133 |
| AjiI | CACGTC | 1 cut(s) | 2552 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2258, 2290 |
| Alw21I | GWGCWC | 2 cut(s) | 99, 141 |
| Alw26I | GTCTC | 3 cut(s) | 482, 1892, 2632 |
| AlwI | GGATC | 5 cut(s) | 976, 1422, 1485, 2080, 2627 |
| Ama87I | CYCGRG | 5 cut(s) | 140, 1738, 1784, 2238, 2390 |
| Aor51HI | AGCGCT | 1 cut(s) | 1085 |
| AoxI | GGCC | 1 cut(s) | 2607 |
| ApeKI | GCWGC | 5 cut(s) | 15, 758, 1081, 2434, 2508 |
| ApoI | RAATTY | 3 cut(s) | 682, 1337, 2266 |
| AseI | ATTAAT | 1 cut(s) | 737 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1017, 1593 |
| AspLEI | GCGC | 1 cut(s) | 1086 |
| AspS9I | GGNCC | 2 cut(s) | 793, 2234 |
| AsuHPI | GGTGA | 6 cut(s) | 91, 1121, 2017, 2207, 2540, 2569 |
| AsuII | TTCGAA | 1 cut(s) | 1687 |
| AsuNHI | GCTAGC | 1 cut(s) | 43 |
| AvaI | CYCGRG | 5 cut(s) | 140, 1738, 1784, 2238, 2390 |
| AvaII | GGWCC | 2 cut(s) | 793, 2234 |
| BaeGI | GKGCMC | 1 cut(s) | 88 |
| BanI | GGYRCC | 1 cut(s) | 83 |
| BanII | GRGCYC | 2 cut(s) | 99, 462 |
| BbsI | GAAGAC | 3 cut(s) | 1010, 1733, 2237 |
| Bbv12I | GWGCWC | 2 cut(s) | 99, 141 |
| BbvI | GCAGC | 5 cut(s) | 27, 745, 1093, 2421, 2495 |
| BccI | CCATC | 9 cut(s) | 134, 564, 617, 664, 1363, 1414, 1694, 1883, 2539 |
| BceAI | ACGGC | 1 cut(s) | 2373 |
| BciVI | GTATCC | 1 cut(s) | 859 |
| BcoDI | GTCTC | 3 cut(s) | 482, 1892, 2632 |
| BcuI | ACTAGT | 1 cut(s) | 133 |
| BfaI | CTAG | 8 cut(s) | 44, 134, 242, 582, 1452, 1578, 1695, 1763 |
| BfmI | CTRYAG | 4 cut(s) | 510, 1158, 2310, 2321 |
| BfoI | RGCGCY | 1 cut(s) | 1087 |
| BfuI | GTATCC | 1 cut(s) | 859 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2293 |
| BglII | AGATCT | 1 cut(s) | 66 |
| BisI | GCNGC | 6 cut(s) | 16, 759, 1082, 2435, 2438, 2509 |
| BlsI | GCNGC | 6 cut(s) | 17, 760, 1083, 2436, 2439, 2510 |
| BmcAI | AGTACT | 2 cut(s) | 336, 1553 |
| Bme18I | GGWCC | 2 cut(s) | 793, 2234 |
| BmeT110I | CYCGRG | 5 cut(s) | 140, 1738, 1784, 2238, 2390 |
| BmgBI | CACGTC | 1 cut(s) | 2552 |
| BmgT120I | GGNCC | 2 cut(s) | 793, 2234 |
| BmiI | GGNNCC | 2 cut(s) | 85, 1955 |
| BmsI | GCATC | 5 cut(s) | 136, 459, 1044, 1264, 1743 |
| BmtI | GCTAGC | 1 cut(s) | 47 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1603 |
| BpiI | GAAGAC | 3 cut(s) | 1010, 1733, 2237 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 479, 511 |
| BpmI | CTGGAG | 1 cut(s) | 524 |
| Bpu14I | TTCGAA | 1 cut(s) | 1687 |
| BpuEI | CTTGAG | 5 cut(s) | 113, 1370, 1646, 1931, 1949 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1413, 1476 |
| BsaHI | GRCGYC | 2 cut(s) | 2020, 2644 |
| BsaI | GGTCTC | 1 cut(s) | 1892 |
| BsaJI | CCNNGG | 5 cut(s) | 72, 463, 613, 1941, 2291 |
| BsaWI | WCCGGW | 1 cut(s) | 2365 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1022, 1052, 1889, 1919 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 78, 615, 1013, 2616 |
| Bse1I | ACTGG | 4 cut(s) | 332, 390, 507, 2118 |
| Bse3DI | GCAATG | 3 cut(s) | 18, 1277, 2449 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1413, 1476 |
| BseDI | CCNNGG | 5 cut(s) | 72, 463, 613, 1941, 2291 |
| BseGI | GGATG | 9 cut(s) | 151, 474, 609, 675, 787, 859, 1374, 2060, 2348 |
| BseJI | GATNNNNATC | 2 cut(s) | 1413, 1476 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 78, 615, 1013, 2616 |
| BseMI | GCAATG | 3 cut(s) | 18, 1277, 2449 |
| BseMII | CTCAG | 1 cut(s) | 2451 |
| BseNI | ACTGG | 4 cut(s) | 332, 390, 507, 2118 |
| BseRI | GAGGAG | 9 cut(s) | 602, 692, 1083, 1086, 1091, 1149, 1802, 1946, 2546 |
| BseSI | GKGCMC | 1 cut(s) | 88 |
| BseXI | GCAGC | 5 cut(s) | 27, 745, 1093, 2421, 2495 |
| BsgI | GTGCAG | 1 cut(s) | 1239 |
| Bsh1236I | CGCG | 1 cut(s) | 2624 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2252 |
| BshFI | GGCC | 1 cut(s) | 2609 |
| BshNI | GGYRCC | 1 cut(s) | 83 |
| BsiEI | CGRYCG | 1 cut(s) | 2252 |
| BsiHKAI | GWGCWC | 2 cut(s) | 99, 141 |
| BsiHKCI | CYCGRG | 5 cut(s) | 140, 1738, 1784, 2238, 2390 |
| BsiSI | CCGG | 1 cut(s) | 2366 |
| BslFI | GGGAC | 2 cut(s) | 369, 1891 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 78, 615, 1013, 2616 |
| BsmAI | GTCTC | 3 cut(s) | 482, 1892, 2632 |
| BsmBI | CGTCTC | 1 cut(s) | 2632 |
| BsmFI | GGGAC | 2 cut(s) | 369, 1891 |
| BsnI | GGCC | 1 cut(s) | 2609 |
| Bso31I | GGTCTC | 1 cut(s) | 1892 |
| BsoBI | CYCGRG | 5 cut(s) | 140, 1738, 1784, 2238, 2390 |
| Bsp119I | TTCGAA | 1 cut(s) | 1687 |
| Bsp1286I | GDGCHC | 4 cut(s) | 88, 99, 141, 462 |
| BspACI | CCGC | 3 cut(s) | 259, 1756, 2438 |
| BspANI | GGCC | 1 cut(s) | 2609 |
| BspCNI | CTCAG | 1 cut(s) | 2452 |
| BspFNI | CGCG | 1 cut(s) | 2624 |
| BspLI | GGNNCC | 2 cut(s) | 85, 1955 |
| BspMAI | CTGCAG | 1 cut(s) | 2314 |
| BspOI | GCTAGC | 1 cut(s) | 47 |
| BspPI | GGATC | 5 cut(s) | 976, 1422, 1485, 2080, 2627 |
| BspT104I | TTCGAA | 1 cut(s) | 1687 |
| BspT107I | GGYRCC | 1 cut(s) | 83 |
| BspTNI | GGTCTC | 1 cut(s) | 1892 |
| BsrDI | GCAATG | 3 cut(s) | 18, 1277, 2449 |
| BsrI | ACTGG | 4 cut(s) | 332, 390, 507, 2118 |
| BssECI | CCNNGG | 5 cut(s) | 72, 463, 613, 1941, 2291 |
| BssNAI | GTATAC | 1 cut(s) | 997 |
| BssNI | GRCGYC | 2 cut(s) | 2020, 2644 |
| BssT1I | CCWWGG | 5 cut(s) | 72, 463, 613, 1941, 2291 |
| Bst1107I | GTATAC | 1 cut(s) | 997 |
| Bst4CI | ACNGT | 6 cut(s) | 284, 339, 572, 1159, 1561, 2615 |
| Bst6I | CTCTTC | 2 cut(s) | 1629, 2076 |
| BstACI | GRCGYC | 2 cut(s) | 2020, 2644 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 83, 2446, 2508 |
| BstBI | TTCGAA | 1 cut(s) | 1687 |
| BstC8I | GCNNGC | 3 cut(s) | 13, 45, 1169 |
| BstDEI | CTNAG | 3 cut(s) | 1009, 1395, 2460 |
| BstF5I | GGATG | 9 cut(s) | 151, 474, 609, 675, 787, 859, 1374, 2060, 2348 |
| BstFNI | CGCG | 1 cut(s) | 2624 |
| BstH2I | RGCGCY | 1 cut(s) | 1087 |
| BstHHI | GCGC | 1 cut(s) | 1086 |
| BstMAI | GTCTC | 3 cut(s) | 482, 1892, 2632 |
| BstMCI | CGRYCG | 1 cut(s) | 2252 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 53, 83, 103, 2293, 2446, 2508 |
| BstNSI | RCATGY | 4 cut(s) | 56, 1003, 1171, 1734 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1603 |
| BstSFI | CTRYAG | 4 cut(s) | 510, 1158, 2310, 2321 |
| BstSLI | GKGCMC | 1 cut(s) | 88 |
| BstUI | CGCG | 1 cut(s) | 2624 |
| BstV1I | GCAGC | 5 cut(s) | 27, 745, 1093, 2421, 2495 |
| BstV2I | GAAGAC | 3 cut(s) | 1010, 1733, 2237 |
| BstX2I | RGATCY | 3 cut(s) | 66, 1477, 2085 |
| BstYI | RGATCY | 3 cut(s) | 66, 1477, 2085 |
| BstZ17I | GTATAC | 1 cut(s) | 997 |
| BsuI | GTATCC | 1 cut(s) | 859 |
| BsuRI | GGCC | 1 cut(s) | 2609 |
| BtrI | CACGTC | 1 cut(s) | 2552 |
| BtsCI | GGATG | 9 cut(s) | 151, 474, 609, 675, 787, 859, 1374, 2060, 2348 |
| BtsI | GCAGTG | 1 cut(s) | 1448 |
| BtsIMutI | CAGTG | 2 cut(s) | 577, 1448 |
| Cac8I | GCNNGC | 3 cut(s) | 13, 45, 1169 |
| CfoI | GCGC | 1 cut(s) | 1086 |
| Cfr13I | GGNCC | 2 cut(s) | 793, 2234 |
| CseI | GACGC | 2 cut(s) | 1931, 2028 |
| Csp6I | GTAC | 4 cut(s) | 305, 335, 1552, 2626 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1272, 1307 |
| CviQI | GTAC | 4 cut(s) | 305, 335, 1552, 2626 |
| DdeI | CTNAG | 3 cut(s) | 1009, 1395, 2460 |
| DraI | TTTAAA | 2 cut(s) | 1063, 1501 |
| EaeI | YGGCCR | 1 cut(s) | 2607 |
| Eam1104I | CTCTTC | 2 cut(s) | 1629, 2076 |
| EarI | CTCTTC | 2 cut(s) | 1629, 2076 |
| Ecl136II | GAGCTC | 1 cut(s) | 97 |
| Eco130I | CCWWGG | 5 cut(s) | 72, 463, 613, 1941, 2291 |
| Eco24I | GRGCYC | 2 cut(s) | 99, 462 |
| Eco31I | GGTCTC | 1 cut(s) | 1892 |
| Eco32I | GATATC | 3 cut(s) | 577, 727, 1768 |
| Eco47I | GGWCC | 2 cut(s) | 793, 2234 |
| Eco47III | AGCGCT | 1 cut(s) | 1085 |
| Eco53kI | GAGCTC | 1 cut(s) | 97 |
| Eco57I | CTGAAG | 2 cut(s) | 331, 2195 |
| Eco88I | CYCGRG | 5 cut(s) | 140, 1738, 1784, 2238, 2390 |
| EcoICRI | GAGCTC | 1 cut(s) | 97 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2234 |
| EcoRI | GAATTC | 2 cut(s) | 1337, 2266 |
| EcoRV | GATATC | 3 cut(s) | 577, 727, 1768 |
| EcoT14I | CCWWGG | 5 cut(s) | 72, 463, 613, 1941, 2291 |
| EcoT22I | ATGCAT | 2 cut(s) | 1279, 1736 |
| EcoT38I | GRGCYC | 2 cut(s) | 99, 462 |
| ErhI | CCWWGG | 5 cut(s) | 72, 463, 613, 1941, 2291 |
| Esp3I | CGTCTC | 1 cut(s) | 2632 |
| FaqI | GGGAC | 2 cut(s) | 369, 1891 |
| FauI | CCCGC | 1 cut(s) | 1749 |
| FauNDI | CATATG | 1 cut(s) | 1602 |
| FblI | GTMKAC | 2 cut(s) | 276, 996 |
| Fnu4HI | GCNGC | 6 cut(s) | 16, 759, 1082, 2435, 2438, 2509 |
| FokI | GGATG | 9 cut(s) | 158, 481, 596, 682, 794, 866, 1381, 2067, 2355 |
| FriOI | GRGCYC | 2 cut(s) | 99, 462 |
| Fsp4HI | GCNGC | 6 cut(s) | 16, 759, 1082, 2435, 2438, 2509 |
| FspBI | CTAG | 8 cut(s) | 44, 134, 242, 582, 1452, 1578, 1695, 1763 |
| GlaI | GCGC | 1 cut(s) | 1085 |
| GluI | GCNGC | 6 cut(s) | 16, 759, 1082, 2435, 2438, 2509 |
| GsuI | CTGGAG | 1 cut(s) | 524 |
| HaeII | RGCGCY | 1 cut(s) | 1087 |
| HaeIII | GGCC | 1 cut(s) | 2609 |
| HapII | CCGG | 1 cut(s) | 2366 |
| HgaI | GACGC | 2 cut(s) | 1931, 2028 |
| HhaI | GCGC | 1 cut(s) | 1086 |
| Hin1I | GRCGYC | 2 cut(s) | 2020, 2644 |
| Hin6I | GCGC | 1 cut(s) | 1084 |
| HinP1I | GCGC | 1 cut(s) | 1084 |
| HincII | GTYRAC | 1 cut(s) | 277 |
| HindII | GTYRAC | 1 cut(s) | 277 |
| HindIII | AAGCTT | 2 cut(s) | 1972, 2207 |
| HinfI | GANTC | 9 cut(s) | 328, 494, 988, 1357, 1711, 1827, 2141, 2306, 2576 |
| HpaII | CCGG | 1 cut(s) | 2366 |
| HphI | GGTGA | 6 cut(s) | 91, 1121, 2017, 2207, 2540, 2569 |
| Hpy166II | GTNNAC | 5 cut(s) | 277, 997, 1316, 2111, 2382 |
| Hpy188I | TCNGA | 7 cut(s) | 350, 690, 715, 731, 1211, 1419, 2581 |
| Hpy188III | TCNNGA | 7 cut(s) | 455, 1387, 1649, 1738, 1784, 2263, 2492 |
| Hpy8I | GTNNAC | 5 cut(s) | 277, 997, 1316, 2111, 2382 |
| Hpy99I | CGWCG | 4 cut(s) | 1925, 2576, 2615, 2646 |
| HpyAV | CCTTC | 4 cut(s) | 1007, 1584, 2114, 2225 |
| HpyCH4III | ACNGT | 6 cut(s) | 284, 339, 572, 1159, 1561, 2615 |
| HpyCH4IV | ACGT | 4 cut(s) | 30, 219, 1798, 2551 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 53, 83, 103, 2293, 2446, 2508 |
| HpyF3I | CTNAG | 3 cut(s) | 1009, 1395, 2460 |
| HpySE526I | ACGT | 4 cut(s) | 30, 219, 1798, 2551 |
| Hsp92I | GRCGYC | 2 cut(s) | 2020, 2644 |
| HspAI | GCGC | 1 cut(s) | 1084 |
| LmnI | GCTCC | 5 cut(s) | 929, 1078, 1164, 1789, 2420 |
| Lsp1109I | GCAGC | 5 cut(s) | 27, 745, 1093, 2421, 2495 |
| LweI | GCATC | 5 cut(s) | 136, 459, 1044, 1264, 1743 |
| MaeI | CTAG | 8 cut(s) | 44, 134, 242, 582, 1452, 1578, 1695, 1763 |
| MaeII | ACGT | 4 cut(s) | 30, 219, 1798, 2551 |
| MfeI | CAATTG | 1 cut(s) | 762 |
| MflI | RGATCY | 3 cut(s) | 66, 1477, 2085 |
| MhlI | GDGCHC | 4 cut(s) | 88, 99, 141, 462 |
| MlyI | GAGTC | 2 cut(s) | 488, 2570 |
| MmeI | TCCRAC | 4 cut(s) | 305, 831, 2032, 2118 |
| Mph1103I | ATGCAT | 2 cut(s) | 1279, 1736 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1017, 1593 |
| MslI | CAYNNNNRTG | 1 cut(s) | 477 |
| MspI | CCGG | 1 cut(s) | 2366 |
| MunI | CAATTG | 1 cut(s) | 762 |
| MvnI | CGCG | 1 cut(s) | 2624 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 53, 83, 103, 2293, 2446, 2508 |
| NdeI | CATATG | 1 cut(s) | 1602 |
| NheI | GCTAGC | 1 cut(s) | 43 |
| NlaIV | GGNNCC | 2 cut(s) | 85, 1955 |
| NsiI | ATGCAT | 2 cut(s) | 1279, 1736 |
| NspI | RCATGY | 4 cut(s) | 56, 1003, 1171, 1734 |
| NspV | TTCGAA | 1 cut(s) | 1687 |
| PaeI | GCATGC | 1 cut(s) | 1171 |
| PaeR7I | CTCGAG | 5 cut(s) | 140, 1738, 1784, 2238, 2390 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 2199, 2245 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1017, 1593 |
| PfeI | GAWTC | 7 cut(s) | 328, 988, 1357, 1711, 1827, 2141, 2306 |
| PflFI | GACNNNGTC | 1 cut(s) | 1903 |
| PkrI | GCNGC | 6 cut(s) | 17, 760, 1083, 2436, 2439, 2510 |
| Ple19I | CGATCG | 1 cut(s) | 2252 |
| PleI | GAGTC | 2 cut(s) | 488, 2570 |
| PpsI | GAGTC | 2 cut(s) | 488, 2570 |
| PpuMI | RGGWCCY | 1 cut(s) | 2234 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1603 |
| PshBI | ATTAAT | 1 cut(s) | 737 |
| PsiI | TTATAA | 1 cut(s) | 1493 |
| Psp124BI | GAGCTC | 1 cut(s) | 99 |
| Psp5II | RGGWCCY | 1 cut(s) | 2234 |
| PspN4I | GGNNCC | 2 cut(s) | 85, 1955 |
| PspPI | GGNCC | 2 cut(s) | 793, 2234 |
| PspPPI | RGGWCCY | 1 cut(s) | 2234 |
| PspXI | VCTCGAGB | 3 cut(s) | 140, 2238, 2390 |
| PstI | CTGCAG | 1 cut(s) | 2314 |
| PsuI | RGATCY | 3 cut(s) | 66, 1477, 2085 |
| PsyI | GACNNNGTC | 1 cut(s) | 1903 |
| PvuI | CGATCG | 1 cut(s) | 2252 |
| RsaI | GTAC | 4 cut(s) | 306, 336, 1553, 2627 |
| RsaNI | GTAC | 4 cut(s) | 305, 335, 1552, 2626 |
| RseI | CAYNNNNRTG | 1 cut(s) | 477 |
| SacI | GAGCTC | 1 cut(s) | 99 |
| SalI | GTCGAC | 1 cut(s) | 275 |
| SatI | GCNGC | 6 cut(s) | 16, 759, 1082, 2435, 2438, 2509 |
| Sau96I | GGNCC | 2 cut(s) | 793, 2234 |
| ScaI | AGTACT | 2 cut(s) | 336, 1553 |
| SchI | GAGTC | 2 cut(s) | 488, 2570 |
| SduI | GDGCHC | 4 cut(s) | 88, 99, 141, 462 |
| SfaNI | GCATC | 5 cut(s) | 136, 459, 1044, 1264, 1743 |
| SfcI | CTRYAG | 4 cut(s) | 510, 1158, 2310, 2321 |
| Sfr274I | CTCGAG | 5 cut(s) | 140, 1738, 1784, 2238, 2390 |
| SfuI | TTCGAA | 1 cut(s) | 1687 |
| SinI | GGWCC | 2 cut(s) | 793, 2234 |
| SlaI | CTCGAG | 5 cut(s) | 140, 1738, 1784, 2238, 2390 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 477 |
| SpeI | ACTAGT | 1 cut(s) | 133 |
| SphI | GCATGC | 1 cut(s) | 1171 |
| SsiI | CCGC | 3 cut(s) | 259, 1756, 2438 |
| SspI | AATATT | 1 cut(s) | 1246 |
| SspMI | CTAG | 8 cut(s) | 44, 134, 242, 582, 1452, 1578, 1695, 1763 |
| SstI | GAGCTC | 1 cut(s) | 99 |
| StyI | CCWWGG | 5 cut(s) | 72, 463, 613, 1941, 2291 |
| TaaI | ACNGT | 6 cut(s) | 284, 339, 572, 1159, 1561, 2615 |
| TaiI | ACGT | 4 cut(s) | 33, 222, 1801, 2554 |
| TatI | WGTACW | 2 cut(s) | 334, 1551 |
| TauI | GCSGC | 1 cut(s) | 2440 |
| TfiI | GAWTC | 7 cut(s) | 328, 988, 1357, 1711, 1827, 2141, 2306 |
| TscAI | CASTG | 2 cut(s) | 577, 1448 |
| TseI | GCWGC | 5 cut(s) | 15, 758, 1081, 2434, 2508 |
| TspGWI | ACGGA | 2 cut(s) | 884, 1559 |
| TspRI | CASTG | 2 cut(s) | 577, 1448 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1903 |
| VpaK11BI | GGWCC | 2 cut(s) | 793, 2234 |
| VspI | ATTAAT | 1 cut(s) | 737 |
| XapI | RAATTY | 3 cut(s) | 682, 1337, 2266 |
| XceI | RCATGY | 4 cut(s) | 56, 1003, 1171, 1734 |
| XhoI | CTCGAG | 5 cut(s) | 140, 1738, 1784, 2238, 2390 |
| XmiI | GTMKAC | 2 cut(s) | 276, 996 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1017, 1593 |
| XspI | CTAG | 8 cut(s) | 44, 134, 242, 582, 1452, 1578, 1695, 1763 |
| ZrmI | AGTACT | 2 cut(s) | 336, 1553 |
| Zsp2I | ATGCAT | 2 cut(s) | 1279, 1736 |