transcription factor
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 559 |
| Acc36I | ACCTGC | 1 cut(s) | 559 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 709 |
| AciI | CCGC | 3 cut(s) | 874, 916, 994 |
| AclWI | GGATC | 2 cut(s) | 122, 760 |
| AcoI | YGGCCR | 1 cut(s) | 813 |
| AcuI | CTGAAG | 2 cut(s) | 257, 512 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 709, 846 |
| AgsI | TTSAA | 3 cut(s) | 321, 349, 604 |
| Alw21I | GWGCWC | 4 cut(s) | 264, 600, 934, 973 |
| Alw26I | GTCTC | 2 cut(s) | 69, 731 |
| Alw44I | GTGCAC | 1 cut(s) | 930 |
| AlwI | GGATC | 2 cut(s) | 122, 760 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 220 |
| AoxI | GGCC | 2 cut(s) | 336, 813 |
| ApaLI | GTGCAC | 1 cut(s) | 930 |
| ApeKI | GCWGC | 6 cut(s) | 176, 217, 311, 503, 640, 667 |
| AseI | ATTAAT | 1 cut(s) | 393 |
| AspA2I | CCTAGG | 1 cut(s) | 17 |
| AspLEI | GCGC | 1 cut(s) | 469 |
| AspS9I | GGNCC | 2 cut(s) | 336, 837 |
| AvaII | GGWCC | 1 cut(s) | 837 |
| AvrII | CCTAGG | 1 cut(s) | 17 |
| AxyI | CCTNAGG | 1 cut(s) | 772 |
| BaeGI | GKGCMC | 2 cut(s) | 500, 934 |
| BalI | TGGCCA | 1 cut(s) | 815 |
| BanII | GRGCYC | 2 cut(s) | 264, 600 |
| BauI | CACGAG | 1 cut(s) | 927 |
| BbsI | GAAGAC | 1 cut(s) | 149 |
| Bbv12I | GWGCWC | 4 cut(s) | 264, 600, 934, 973 |
| BbvCI | CCTCAGC | 1 cut(s) | 194 |
| BbvI | GCAGC | 6 cut(s) | 163, 229, 298, 515, 652, 679 |
| BccI | CCATC | 3 cut(s) | 2, 449, 703 |
| BceAI | ACGGC | 1 cut(s) | 977 |
| BciVI | GTATCC | 1 cut(s) | 37 |
| BcoDI | GTCTC | 2 cut(s) | 69, 731 |
| BfaI | CTAG | 2 cut(s) | 18, 251 |
| BfmI | CTRYAG | 1 cut(s) | 33 |
| BfuAI | ACCTGC | 1 cut(s) | 559 |
| BfuI | GTATCC | 1 cut(s) | 37 |
| BglII | AGATCT | 1 cut(s) | 480 |
| BisI | GCNGC | 7 cut(s) | 177, 218, 312, 504, 641, 668, 875 |
| BlnI | CCTAGG | 1 cut(s) | 17 |
| BlsI | GCNGC | 7 cut(s) | 178, 219, 313, 505, 642, 669, 876 |
| Bme18I | GGWCC | 1 cut(s) | 837 |
| BmgT120I | GGNCC | 2 cut(s) | 336, 837 |
| BmiI | GGNNCC | 5 cut(s) | 337, 627, 769, 838, 839 |
| BmsI | GCATC | 4 cut(s) | 298, 421, 682, 703 |
| BpiI | GAAGAC | 1 cut(s) | 149 |
| BpmI | CTGGAG | 2 cut(s) | 242, 248 |
| Bpu10I | CCTNAGC | 1 cut(s) | 194 |
| BpuEI | CTTGAG | 1 cut(s) | 863 |
| Bsa29I | ATCGAT | 1 cut(s) | 755 |
| BsaAI | YACGTR | 1 cut(s) | 968 |
| BsaBI | GATNNNNATC | 1 cut(s) | 57 |
| BsaI | GGTCTC | 2 cut(s) | 69, 731 |
| BsaJI | CCNNGG | 3 cut(s) | 17, 703, 816 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 629, 659 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 709, 846 |
| Bse1I | ACTGG | 3 cut(s) | 111, 747, 919 |
| Bse21I | CCTNAGG | 1 cut(s) | 772 |
| Bse3DI | GCAATG | 3 cut(s) | 87, 716, 828 |
| Bse8I | GATNNNNATC | 1 cut(s) | 57 |
| BseCI | ATCGAT | 1 cut(s) | 755 |
| BseDI | CCNNGG | 3 cut(s) | 17, 703, 816 |
| BseGI | GGATG | 2 cut(s) | 714, 718 |
| BseJI | GATNNNNATC | 1 cut(s) | 57 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 709, 846 |
| BseMI | GCAATG | 3 cut(s) | 87, 716, 828 |
| BseNI | ACTGG | 3 cut(s) | 111, 747, 919 |
| BseRI | GAGGAG | 1 cut(s) | 760 |
| BseSI | GKGCMC | 2 cut(s) | 500, 934 |
| BseXI | GCAGC | 6 cut(s) | 163, 229, 298, 515, 652, 679 |
| BshFI | GGCC | 2 cut(s) | 338, 815 |
| BshVI | ATCGAT | 1 cut(s) | 755 |
| BsiHKAI | GWGCWC | 4 cut(s) | 264, 600, 934, 973 |
| BsiSI | CCGG | 1 cut(s) | 765 |
| BslFI | GGGAC | 1 cut(s) | 850 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 709, 846 |
| BsmAI | GTCTC | 2 cut(s) | 69, 731 |
| BsmFI | GGGAC | 1 cut(s) | 850 |
| BsnI | GGCC | 2 cut(s) | 338, 815 |
| Bso31I | GGTCTC | 2 cut(s) | 69, 731 |
| Bsp1286I | GDGCHC | 5 cut(s) | 264, 500, 600, 934, 973 |
| Bsp143I | GATC | 6 cut(s) | 127, 136, 404, 480, 752, 756 |
| Bsp19I | CCATGG | 1 cut(s) | 816 |
| BspACI | CCGC | 3 cut(s) | 874, 916, 994 |
| BspANI | GGCC | 2 cut(s) | 338, 815 |
| BspDI | ATCGAT | 1 cut(s) | 755 |
| BspLI | GGNNCC | 5 cut(s) | 337, 627, 769, 838, 839 |
| BspMI | ACCTGC | 1 cut(s) | 559 |
| BspPI | GGATC | 2 cut(s) | 122, 760 |
| BspQI | GCTCTTC | 1 cut(s) | 369 |
| BspTNI | GGTCTC | 2 cut(s) | 69, 731 |
| BsrDI | GCAATG | 3 cut(s) | 87, 716, 828 |
| BsrI | ACTGG | 3 cut(s) | 111, 747, 919 |
| BssECI | CCNNGG | 3 cut(s) | 17, 703, 816 |
| BssMI | GATC | 6 cut(s) | 127, 136, 404, 480, 752, 756 |
| BssSI | CACGAG | 1 cut(s) | 927 |
| BssT1I | CCWWGG | 3 cut(s) | 17, 703, 816 |
| Bst2BI | CACGAG | 1 cut(s) | 927 |
| Bst4CI | ACNGT | 2 cut(s) | 366, 902 |
| Bst6I | CTCTTC | 2 cut(s) | 153, 369 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 431, 692, 895 |
| BstBAI | YACGTR | 1 cut(s) | 968 |
| BstC8I | GCNNGC | 4 cut(s) | 159, 270, 990, 994 |
| BstDSI | CCRYGG | 1 cut(s) | 816 |
| BstF5I | GGATG | 2 cut(s) | 714, 718 |
| BstHHI | GCGC | 1 cut(s) | 469 |
| BstKTI | GATC | 6 cut(s) | 130, 139, 407, 483, 755, 759 |
| BstMAI | GTCTC | 2 cut(s) | 69, 731 |
| BstMBI | GATC | 6 cut(s) | 127, 136, 404, 480, 752, 756 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 98, 376, 385, 431, 509, 604, 692, 895, 938 |
| BstSFI | CTRYAG | 1 cut(s) | 33 |
| BstSLI | GKGCMC | 2 cut(s) | 500, 934 |
| BstV1I | GCAGC | 6 cut(s) | 163, 229, 298, 515, 652, 679 |
| BstV2I | GAAGAC | 1 cut(s) | 149 |
| BstX2I | RGATCY | 2 cut(s) | 127, 480 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 823 |
| BstYI | RGATCY | 2 cut(s) | 127, 480 |
| Bsu15I | ATCGAT | 1 cut(s) | 755 |
| Bsu36I | CCTNAGG | 1 cut(s) | 772 |
| BsuI | GTATCC | 1 cut(s) | 37 |
| BsuRI | GGCC | 2 cut(s) | 338, 815 |
| BsuTUI | ATCGAT | 1 cut(s) | 755 |
| BtgI | CCRYGG | 1 cut(s) | 816 |
| BtsCI | GGATG | 2 cut(s) | 714, 718 |
| BtsI | GCAGTG | 1 cut(s) | 884 |
| BtsIMutI | CAGTG | 3 cut(s) | 118, 754, 884 |
| BveI | ACCTGC | 1 cut(s) | 559 |
| Cac8I | GCNNGC | 4 cut(s) | 159, 270, 990, 994 |
| CaiI | CAGNNNCTG | 1 cut(s) | 220 |
| CfoI | GCGC | 1 cut(s) | 469 |
| Cfr13I | GGNCC | 2 cut(s) | 336, 837 |
| ClaI | ATCGAT | 1 cut(s) | 755 |
| CviAII | CATG | 5 cut(s) | 340, 422, 802, 817, 947 |
| DpnI | GATC | 6 cut(s) | 129, 138, 406, 482, 754, 758 |
| DpnII | GATC | 6 cut(s) | 127, 136, 404, 480, 752, 756 |
| EaeI | YGGCCR | 1 cut(s) | 813 |
| Eam1104I | CTCTTC | 2 cut(s) | 153, 369 |
| EarI | CTCTTC | 2 cut(s) | 153, 369 |
| Ecl136II | GAGCTC | 2 cut(s) | 262, 598 |
| Eco130I | CCWWGG | 3 cut(s) | 17, 703, 816 |
| Eco24I | GRGCYC | 2 cut(s) | 264, 600 |
| Eco31I | GGTCTC | 2 cut(s) | 69, 731 |
| Eco32I | GATATC | 1 cut(s) | 28 |
| Eco47I | GGWCC | 1 cut(s) | 837 |
| Eco53kI | GAGCTC | 2 cut(s) | 262, 598 |
| Eco57I | CTGAAG | 2 cut(s) | 257, 512 |
| Eco81I | CCTNAGG | 1 cut(s) | 772 |
| EcoICRI | GAGCTC | 2 cut(s) | 262, 598 |
| EcoO109I | RGGNCCY | 1 cut(s) | 837 |
| EcoRV | GATATC | 1 cut(s) | 28 |
| EcoT14I | CCWWGG | 3 cut(s) | 17, 703, 816 |
| EcoT22I | ATGCAT | 1 cut(s) | 718 |
| EcoT38I | GRGCYC | 2 cut(s) | 264, 600 |
| ErhI | CCWWGG | 3 cut(s) | 17, 703, 816 |
| FaeI | CATG | 5 cut(s) | 343, 425, 805, 820, 950 |
| FaqI | GGGAC | 1 cut(s) | 850 |
| FatI | CATG | 5 cut(s) | 339, 421, 801, 816, 946 |
| FauI | CCCGC | 2 cut(s) | 923, 1001 |
| FauNDI | CATATG | 1 cut(s) | 208 |
| Fnu4HI | GCNGC | 7 cut(s) | 177, 218, 312, 504, 641, 668, 875 |
| FokI | GGATG | 2 cut(s) | 721, 725 |
| FriOI | GRGCYC | 2 cut(s) | 264, 600 |
| Fsp4HI | GCNGC | 7 cut(s) | 177, 218, 312, 504, 641, 668, 875 |
| FspBI | CTAG | 2 cut(s) | 18, 251 |
| GlaI | GCGC | 1 cut(s) | 468 |
| GluI | GCNGC | 7 cut(s) | 177, 218, 312, 504, 641, 668, 875 |
| GsuI | CTGGAG | 2 cut(s) | 242, 248 |
| HaeIII | GGCC | 2 cut(s) | 338, 815 |
| HapII | CCGG | 1 cut(s) | 765 |
| HhaI | GCGC | 1 cut(s) | 469 |
| Hin1II | CATG | 5 cut(s) | 343, 425, 805, 820, 950 |
| Hin6I | GCGC | 1 cut(s) | 467 |
| HinP1I | GCGC | 1 cut(s) | 467 |
| HincII | GTYRAC | 1 cut(s) | 243 |
| HindII | GTYRAC | 1 cut(s) | 243 |
| HindIII | AAGCTT | 2 cut(s) | 605, 830 |
| HinfI | GANTC | 7 cut(s) | 58, 107, 145, 244, 285, 382, 459 |
| HpaII | CCGG | 1 cut(s) | 765 |
| Hpy166II | GTNNAC | 3 cut(s) | 243, 415, 932 |
| Hpy188I | TCNGA | 6 cut(s) | 106, 141, 237, 595, 633, 975 |
| Hpy188III | TCNNGA | 5 cut(s) | 170, 303, 601, 783, 907 |
| Hpy8I | GTNNAC | 3 cut(s) | 243, 415, 932 |
| HpyAV | CCTTC | 1 cut(s) | 487 |
| HpyCH4III | ACNGT | 2 cut(s) | 366, 902 |
| HpyCH4IV | ACGT | 1 cut(s) | 967 |
| HpyCH4V | TGCA | 8 cut(s) | 425, 434, 667, 716, 721, 889, 898, 932 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 98, 376, 385, 431, 509, 604, 692, 895, 938 |
| HpySE526I | ACGT | 1 cut(s) | 967 |
| Hsp92II | CATG | 5 cut(s) | 343, 425, 805, 820, 950 |
| HspAI | GCGC | 1 cut(s) | 467 |
| KflI | GGGWCCC | 1 cut(s) | 837 |
| Kzo9I | GATC | 6 cut(s) | 127, 136, 404, 480, 752, 756 |
| LguI | GCTCTTC | 1 cut(s) | 369 |
| LmnI | GCTCC | 5 cut(s) | 97, 267, 625, 637, 773 |
| Lsp1109I | GCAGC | 6 cut(s) | 163, 229, 298, 515, 652, 679 |
| LweI | GCATC | 4 cut(s) | 298, 421, 682, 703 |
| MaeI | CTAG | 2 cut(s) | 18, 251 |
| MaeII | ACGT | 1 cut(s) | 967 |
| MaeIII | GTNAC | 3 cut(s) | 113, 613, 776 |
| MalI | GATC | 6 cut(s) | 129, 138, 406, 482, 754, 758 |
| MboI | GATC | 6 cut(s) | 127, 136, 404, 480, 752, 756 |
| MboII | GAAGA | 6 cut(s) | 140, 154, 211, 280, 386, 701 |
| MflI | RGATCY | 2 cut(s) | 127, 480 |
| MhlI | GDGCHC | 5 cut(s) | 264, 500, 600, 934, 973 |
| MlsI | TGGCCA | 1 cut(s) | 815 |
| MluCI | AATT | 2 cut(s) | 390, 868 |
| MluNI | TGGCCA | 1 cut(s) | 815 |
| MlyI | GAGTC | 2 cut(s) | 139, 238 |
| MmeI | TCCRAC | 1 cut(s) | 603 |
| MnlI | CCTC | 8 cut(s) | 166, 189, 552, 572, 639, 685, 781, 838 |
| Mox20I | TGGCCA | 1 cut(s) | 815 |
| Mph1103I | ATGCAT | 1 cut(s) | 718 |
| MscI | TGGCCA | 1 cut(s) | 815 |
| MseI | TTAA | 3 cut(s) | 393, 486, 657 |
| MslI | CAYNNNNRTG | 3 cut(s) | 426, 474, 821 |
| Msp20I | TGGCCA | 1 cut(s) | 815 |
| MspA1I | CMGCKG | 1 cut(s) | 220 |
| MspI | CCGG | 1 cut(s) | 765 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 98, 376, 385, 431, 509, 604, 692, 895, 938 |
| NcoI | CCATGG | 1 cut(s) | 816 |
| NdeI | CATATG | 1 cut(s) | 208 |
| NdeII | GATC | 6 cut(s) | 127, 136, 404, 480, 752, 756 |
| NlaIII | CATG | 5 cut(s) | 343, 425, 805, 820, 950 |
| NlaIV | GGNNCC | 5 cut(s) | 337, 627, 769, 838, 839 |
| NmuCI | GTSAC | 2 cut(s) | 113, 776 |
| NsiI | ATGCAT | 1 cut(s) | 718 |
| PaqCI | CACCTGC | 1 cut(s) | 559 |
| PciSI | GCTCTTC | 1 cut(s) | 369 |
| PfeI | GAWTC | 5 cut(s) | 58, 107, 285, 382, 459 |
| PflFI | GACNNNGTC | 1 cut(s) | 742 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 709 |
| PkrI | GCNGC | 7 cut(s) | 178, 219, 313, 505, 642, 669, 876 |
| PleI | GAGTC | 2 cut(s) | 139, 238 |
| PpsI | GAGTC | 2 cut(s) | 139, 238 |
| Ppu21I | YACGTR | 1 cut(s) | 968 |
| PpuMI | RGGWCCY | 1 cut(s) | 837 |
| PshBI | ATTAAT | 1 cut(s) | 393 |
| Psp124BI | GAGCTC | 2 cut(s) | 264, 600 |
| Psp5II | RGGWCCY | 1 cut(s) | 837 |
| PspN4I | GGNNCC | 5 cut(s) | 337, 627, 769, 838, 839 |
| PspPI | GGNCC | 2 cut(s) | 336, 837 |
| PspPPI | RGGWCCY | 1 cut(s) | 837 |
| PstNI | CAGNNNCTG | 1 cut(s) | 220 |
| PsuI | RGATCY | 2 cut(s) | 127, 480 |
| PsyI | GACNNNGTC | 1 cut(s) | 742 |
| PvuII | CAGCTG | 1 cut(s) | 220 |
| RseI | CAYNNNNRTG | 3 cut(s) | 426, 474, 821 |
| SacI | GAGCTC | 2 cut(s) | 264, 600 |
| SapI | GCTCTTC | 1 cut(s) | 369 |
| SaqAI | TTAA | 3 cut(s) | 393, 486, 657 |
| SatI | GCNGC | 7 cut(s) | 177, 218, 312, 504, 641, 668, 875 |
| Sau3AI | GATC | 6 cut(s) | 127, 136, 404, 480, 752, 756 |
| Sau96I | GGNCC | 2 cut(s) | 336, 837 |
| SchI | GAGTC | 2 cut(s) | 139, 238 |
| SduI | GDGCHC | 5 cut(s) | 264, 500, 600, 934, 973 |
| SfaNI | GCATC | 4 cut(s) | 298, 421, 682, 703 |
| SfcI | CTRYAG | 1 cut(s) | 33 |
| SinI | GGWCC | 1 cut(s) | 837 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 426, 474, 821 |
| SmlI | CTYRAG | 1 cut(s) | 842 |
| SmoI | CTYRAG | 1 cut(s) | 842 |
| Sse9I | AATT | 2 cut(s) | 390, 868 |
| SsiI | CCGC | 3 cut(s) | 874, 916, 994 |
| SspMI | CTAG | 2 cut(s) | 18, 251 |
| SstI | GAGCTC | 2 cut(s) | 264, 600 |
| StyI | CCWWGG | 3 cut(s) | 17, 703, 816 |
| TaaI | ACNGT | 2 cut(s) | 366, 902 |
| TaiI | ACGT | 1 cut(s) | 970 |
| TaqI | TCGA | 2 cut(s) | 122, 755 |
| TasI | AATT | 2 cut(s) | 390, 868 |
| TauI | GCSGC | 1 cut(s) | 877 |
| TfiI | GAWTC | 5 cut(s) | 58, 107, 285, 382, 459 |
| Tru1I | TTAA | 3 cut(s) | 393, 486, 657 |
| Tru9I | TTAA | 3 cut(s) | 393, 486, 657 |
| TscAI | CASTG | 3 cut(s) | 118, 754, 891 |
| TseFI | GTSAC | 2 cut(s) | 113, 776 |
| TseI | GCWGC | 6 cut(s) | 176, 217, 311, 503, 640, 667 |
| Tsp45I | GTSAC | 2 cut(s) | 113, 776 |
| TspDTI | ATGAA | 3 cut(s) | 280, 411, 579 |
| TspGWI | ACGGA | 2 cut(s) | 650, 845 |
| TspRI | CASTG | 3 cut(s) | 118, 754, 891 |
| Tth111I | GACNNNGTC | 1 cut(s) | 742 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 709 |
| VneI | GTGCAC | 1 cut(s) | 930 |
| VpaK11BI | GGWCC | 1 cut(s) | 837 |
| VspI | ATTAAT | 1 cut(s) | 393 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 94, 323, 530 |
| XmaJI | CCTAGG | 1 cut(s) | 17 |
| XspI | CTAG | 2 cut(s) | 18, 251 |
| Zsp2I | ATGCAT | 1 cut(s) | 718 |