Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001056

Physical Location & Seq

Genomic Coordinates Forward (+)

2154746 .. 2157719

Gene Structure 2974 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G06960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGGAGATACTAGTCCAAGAACATCAGTCTCAACAGATGGAGACACTGATCATAATAACCTAATGTTCGATGAAGGGCATTTGGGTATCGGTGCTTCTGATTCTAGTGACCGTTCAAAGAGTAAAATGGATCAAAAGACGCTTCGTAGGCTCGCTCAAAACCGTGAGGCTGCAAGGAAAAGCAGATTGAGGAAGAAAGCATATGTTCAGCAGCTAGAGAACAGTCGATTGAAGCTAACACAACTTGAGCAGGAGCTACAAAGAGCACGGCAACAGGGTGTCTTTATCTCAAGCTCTGGAGACCAAGCCCATTCTACCGCTGGAGATGGGGCAATGGCATTTGATGTAGAATACAGACGATGGCAGGAAGATAAAAACAGACAGATGAAGGAGCTGAGTTCTGCTATAGATTCTCACGCGACTGATTCTGAGCTTCGGATAATTGTAGATGGAGTAATAGCTCACTATGAGGAGCTTTACAGGATAAAAGGCAACGCAGCTAAGAGTGATGTCTTCCATTTATTATCAGGGATGTGGAAAACCCCAGCTGAGAGATGTTTCTTGTGGCTCGGCGGTTTCCGTTCATCAGAACTTCTCAAGCTTATAGCGAGTCAGTTGGAGCCCTTGACAGAACAACAATCGCTAGACATAAATAACTTGCAACAGTCTTCTCAGCAAGCAGAAGATGCTTTGTCTCAAGGGATGGACAACTTACAGCAATCACTCGCTGATACTTTATCGAGTGGGACTCTCGGTTCAAGTTCATCAGGGAATGTAGCTAGCTACATGGGTCAGATGGCCATGGCGATGGGGAAGTTAGGTACCCTTGAAGGATTTATCCGCCAGGCTGATAACTTAAGGCTACAAACATATCAACAGATGGTGAGACTATTAACAACCCGACAATCGGCTCGTGCTCTCCTTGCAGTACACAATTATACATTGCGGTTACGTGCTCTTAGCTCTCTATGGCTTGCCAGACCAAGAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045087 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046677 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1 bZIP_2

Protein Analysis

330

Amino Acids

36.89

Weight (kDa)

8.58

Isoelectric Point (pI)

57.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	46 - 86	1e-06	bZIP transcription factor
DOG1	PF14144	128 - 204	2e-32	Seed dormancy control

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12250 AT3G12250 AT3G12250 AT3G12250 AT3G12250 AT3G12250 AT3G12250 AT5G06950 AT5G06950 AT5G06950 AT5G06950 AT5G06950 AT5G06960 AT5G06960 AT5G06960
fragaria_vesca	FvH4_6g25330 FvH4_6g25330 FvH4_6g25330 FvH4_6g25330 FvH4_6g25330 FvH4_6g25330 FvH4_6g25330 FvH4_6g25330 FvH4_7g03530
malus_domestica	MD02G1279400.v1.1 MD07G1047300.v1.1 MD12G1096400.v1.1 MD14G1089200.v1.1
prunus_persica	Prupe.2G041300_v2.0.a1 Prupe.7G037900_v2.0.a1 Prupe.7G037900_v2.0.a1 Prupe.7G037900_v2.0.a1 Prupe.7G037900_v2.0.a1
pyrus_communis	pycom02g23960 pycom07g03420 pycom12g08570 pycom14g07870
rosa_chinensis	RchiOBHm_Chr1g0325831 RchiOBHm_Chr2g0125681
rosa_laevigata	RLG00000018877 RLG00000030099
rosa_multiflora	Rmu_sc0013657.1_g000002 Rmu_ssc0000055.1_g000021
rosa_roxburghii	Rroxscaffold_2G00117830 Rroxscaffold_4G00324240
rosa_rugosa	Rorug01G0055400 Rorug02G0258500 Rorug02G0258600.1 Rorug02G0258700 Rorug02G0258700 Rorug02G0258700
rosa_samantha	Rh1AG071800 Rh1BG058700 Rh1CG071100 Rh1DG075900 Rh2AG317000 Rh2BG324900 Rh2CG306800
rosa_wichuraiana	Rw1G005840 Rw2G025630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	821
AccB1I	GGYRCC	1 cut(s)	821
AccII	CGCG	1 cut(s)	419
AciI	CCGC	4 cut(s)	318, 573, 841, 946
AclWI	GGATC	1 cut(s)	138
AcoI	YGGCCR	1 cut(s)	798
AfaI	GTAC	2 cut(s)	823, 930
AfiI	CCNNNNNNNGG	1 cut(s)	907
AflII	CTTAAG	1 cut(s)	856
AgsI	TTSAA	4 cut(s)	117, 232, 759, 830
AhlI	ACTAGT	1 cut(s)	11
AjnI	CCWGG	1 cut(s)	843
AloI	GAACNNNNNNTCC	2 cut(s)	739, 771
Alw21I	GWGCWC	3 cut(s)	268, 919, 958
Alw26I	GTCTC	5 cut(s)	34, 36, 294, 699, 880
AlwI	GGATC	1 cut(s)	138
AoxI	GGCC	1 cut(s)	798
ApeKI	GCWGC	3 cut(s)	170, 211, 497
Asp718I	GGTACC	1 cut(s)	821
AsuHPI	GGTGA	1 cut(s)	895
AsuNHI	GCTAGC	1 cut(s)	779
BalI	TGGCCA	1 cut(s)	800
BanI	GGYRCC	1 cut(s)	821
BanII	GRGCYC	1 cut(s)	624
BarI	GAAGNNNNNNTAC	2 cut(s)	79, 111
BauI	CACGAG	1 cut(s)	912
BbsI	GAAGAC	2 cut(s)	505, 660
Bbv12I	GWGCWC	3 cut(s)	268, 919, 958
BbvI	GCAGC	3 cut(s)	157, 223, 509
BccI	CCATC	8 cut(s)	32, 320, 354, 443, 697, 790, 802, 874
BceAI	ACGGC	1 cut(s)	284
BciT130I	CCWGG	1 cut(s)	845
BclI	TGATCA	1 cut(s)	49
BcoDI	GTCTC	5 cut(s)	34, 36, 294, 699, 880
BcuI	ACTAGT	1 cut(s)	11
BfaI	CTAG	5 cut(s)	12, 105, 215, 644, 780
BfmI	CTRYAG	1 cut(s)	405
BfrI	CTTAAG	1 cut(s)	856
BisI	GCNGC	3 cut(s)	171, 212, 498
BlsI	GCNGC	3 cut(s)	172, 213, 499
Bme1390I	CCNGG	1 cut(s)	845
BmiI	GGNNCC	2 cut(s)	621, 823
BmrFI	CCNGG	1 cut(s)	845
BmsI	GCATC	1 cut(s)	676
BmtI	GCTAGC	1 cut(s)	783
BpiI	GAAGAC	2 cut(s)	505, 660
BplI	GAGNNNNNCTC	2 cut(s)	733, 765
BpmI	CTGGAG	2 cut(s)	318, 342
BpuEI	CTTGAG	4 cut(s)	266, 274, 581, 681
BsaAI	YACGTR	1 cut(s)	953
BsaI	GGTCTC	1 cut(s)	294
BsaJI	CCNNGG	1 cut(s)	801
Bsc4I	CCNNNNNNNGG	1 cut(s)	907
Bse3DI	GCAATG	2 cut(s)	339, 941
BseBI	CCWGG	1 cut(s)	845
BseDI	CCNNGG	1 cut(s)	801
BseGI	GGATG	2 cut(s)	537, 708
BseLI	CCNNNNNNNGG	1 cut(s)	907
BseMI	GCAATG	2 cut(s)	339, 941
BseMII	CTCAG	4 cut(s)	386, 420, 540, 686
BseRI	GAGGAG	1 cut(s)	485
BseXI	GCAGC	3 cut(s)	157, 223, 509
BseYI	CCCAGC	1 cut(s)	544
Bsh1236I	CGCG	1 cut(s)	419
BshFI	GGCC	1 cut(s)	800
BshNI	GGYRCC	1 cut(s)	821
BsiHKAI	GWGCWC	3 cut(s)	268, 919, 958
BslFI	GGGAC	1 cut(s)	760
BslI	CCNNNNNNNGG	1 cut(s)	907
BsmAI	GTCTC	5 cut(s)	34, 36, 294, 699, 880
BsmFI	GGGAC	1 cut(s)	760
BsnI	GGCC	1 cut(s)	800
Bso31I	GGTCTC	1 cut(s)	294
Bsp1286I	GDGCHC	4 cut(s)	268, 624, 919, 958
Bsp143I	GATC	2 cut(s)	49, 130
Bsp19I	CCATGG	1 cut(s)	801
BspACI	CCGC	4 cut(s)	318, 573, 841, 946
BspANI	GGCC	1 cut(s)	800
BspCNI	CTCAG	4 cut(s)	387, 421, 541, 685
BspFNI	CGCG	1 cut(s)	419
BspLI	GGNNCC	2 cut(s)	621, 823
BspOI	GCTAGC	1 cut(s)	783
BspPI	GGATC	1 cut(s)	138
BspT107I	GGYRCC	1 cut(s)	821
BspTI	CTTAAG	1 cut(s)	856
BspTNI	GGTCTC	1 cut(s)	294
BsrDI	GCAATG	2 cut(s)	339, 941
BssECI	CCNNGG	1 cut(s)	801
BssMI	GATC	2 cut(s)	49, 130
BssSI	CACGAG	1 cut(s)	912
BssT1I	CCWWGG	1 cut(s)	801
Bst2BI	CACGAG	1 cut(s)	912
Bst2UI	CCWGG	1 cut(s)	845
Bst4CI	ACNGT	4 cut(s)	113, 164, 224, 666
BstAFI	CTTAAG	1 cut(s)	856
BstAPI	GCANNNNNTGC	1 cut(s)	686
BstBAI	YACGTR	1 cut(s)	953
BstC8I	GCNNGC	4 cut(s)	153, 678, 781, 975
BstDEI	CTNAG	6 cut(s)	395, 429, 501, 549, 672, 959
BstDSI	CCRYGG	1 cut(s)	801
BstF5I	GGATG	2 cut(s)	537, 708
BstFNI	CGCG	1 cut(s)	419
BstKTI	GATC	2 cut(s)	52, 133
BstMAI	GTCTC	5 cut(s)	34, 36, 294, 699, 880
BstMBI	GATC	2 cut(s)	49, 130
BstMWI	GCNNNNNNNGC	3 cut(s)	148, 686, 923
BstNI	CCWGG	1 cut(s)	845
BstSCI	CCNGG	1 cut(s)	843
BstSFI	CTRYAG	1 cut(s)	405
BstUI	CGCG	1 cut(s)	419
BstV1I	GCAGC	3 cut(s)	157, 223, 509
BstV2I	GAAGAC	2 cut(s)	505, 660
BstXI	CCANNNNNNTGG	1 cut(s)	808
BsuRI	GGCC	1 cut(s)	800
BtgI	CCRYGG	1 cut(s)	801
BtgZI	GCGATG	1 cut(s)	821
BtsCI	GGATG	2 cut(s)	537, 708
BtsIMutI	CAGTG	1 cut(s)	45
Cac8I	GCNNGC	4 cut(s)	153, 678, 781, 975
CseI	GACGC	1 cut(s)	148
Csp6I	GTAC	2 cut(s)	822, 929
CviAII	CATG	2 cut(s)	787, 802
CviQI	GTAC	2 cut(s)	822, 929
DdeI	CTNAG	6 cut(s)	395, 429, 501, 549, 672, 959
DpnI	GATC	2 cut(s)	51, 132
DpnII	GATC	2 cut(s)	49, 130
EaeI	YGGCCR	1 cut(s)	798
EciI	GGCGGA	1 cut(s)	830
Eco130I	CCWWGG	1 cut(s)	801
Eco24I	GRGCYC	1 cut(s)	624
Eco31I	GGTCTC	1 cut(s)	294
EcoRII	CCWGG	1 cut(s)	843
EcoT14I	CCWWGG	1 cut(s)	801
EcoT38I	GRGCYC	1 cut(s)	624
ErhI	CCWWGG	1 cut(s)	801
FaeI	CATG	2 cut(s)	790, 805
FaqI	GGGAC	1 cut(s)	760
FatI	CATG	2 cut(s)	786, 801
FauNDI	CATATG	1 cut(s)	202
FbaI	TGATCA	1 cut(s)	49
Fnu4HI	GCNGC	3 cut(s)	171, 212, 498
FokI	GGATG	2 cut(s)	544, 715
FriOI	GRGCYC	1 cut(s)	624
Fsp4HI	GCNGC	3 cut(s)	171, 212, 498
FspBI	CTAG	5 cut(s)	12, 105, 215, 644, 780
GluI	GCNGC	3 cut(s)	171, 212, 498
GsaI	CCCAGC	1 cut(s)	548
GsuI	CTGGAG	2 cut(s)	318, 342
HaeIII	GGCC	1 cut(s)	800
HgaI	GACGC	1 cut(s)	148
Hin1II	CATG	2 cut(s)	790, 805
HindIII	AAGCTT	1 cut(s)	599
HinfI	GANTC	5 cut(s)	101, 410, 425, 610, 748
HphI	GGTGA	1 cut(s)	895
Hpy166II	GTNNAC	1 cut(s)	931
Hpy188I	TCNGA	5 cut(s)	100, 430, 438, 589, 795
Hpy188III	TCNNGA	1 cut(s)	297
Hpy8I	GTNNAC	1 cut(s)	931
HpyAV	CCTTC	3 cut(s)	68, 382, 824
HpyCH4III	ACNGT	4 cut(s)	113, 164, 224, 666
HpyCH4IV	ACGT	1 cut(s)	952
HpyCH4V	TGCA	3 cut(s)	173, 661, 926
HpyF10VI	GCNNNNNNNGC	3 cut(s)	148, 686, 923
HpyF3I	CTNAG	6 cut(s)	395, 429, 501, 549, 672, 959
HpySE526I	ACGT	1 cut(s)	952
Hsp92II	CATG	2 cut(s)	790, 805
KpnI	GGTACC	1 cut(s)	825
Ksp22I	TGATCA	1 cut(s)	49
Kzo9I	GATC	2 cut(s)	49, 130
LmnI	GCTCC	4 cut(s)	253, 391, 472, 619
Lsp1109I	GCAGC	3 cut(s)	157, 223, 509
LweI	GCATC	1 cut(s)	676
MaeI	CTAG	5 cut(s)	12, 105, 215, 644, 780
MaeII	ACGT	1 cut(s)	952
MaeIII	GTNAC	2 cut(s)	107, 948
MalI	GATC	2 cut(s)	51, 132
MboI	GATC	2 cut(s)	49, 130
MboII	GAAGA	5 cut(s)	205, 380, 505, 660, 695
MhlI	GDGCHC	4 cut(s)	268, 624, 919, 958
MlsI	TGGCCA	1 cut(s)	800
MluCI	AATT	2 cut(s)	441, 934
MluNI	TGGCCA	1 cut(s)	800
MlyI	GAGTC	2 cut(s)	619, 742
MmeI	TCCRAC	1 cut(s)	597
MnlI	CCTC	3 cut(s)	160, 183, 463
Mox20I	TGGCCA	1 cut(s)	800
MscI	TGGCCA	1 cut(s)	800
MseI	TTAA	2 cut(s)	857, 893
MslI	CAYNNNNRTG	1 cut(s)	806
Msp20I	TGGCCA	1 cut(s)	800
MspA1I	CMGCKG	2 cut(s)	320, 548
MspCI	CTTAAG	1 cut(s)	856
MspR9I	CCNGG	1 cut(s)	845
MvaI	CCWGG	1 cut(s)	845
MvnI	CGCG	1 cut(s)	419
MwoI	GCNNNNNNNGC	3 cut(s)	148, 686, 923
NcoI	CCATGG	1 cut(s)	801
NdeI	CATATG	1 cut(s)	202
NdeII	GATC	2 cut(s)	49, 130
NheI	GCTAGC	1 cut(s)	779
NlaIII	CATG	2 cut(s)	790, 805
NlaIV	GGNNCC	2 cut(s)	621, 823
NmeAIII	GCCGAG	1 cut(s)	549
NmuCI	GTSAC	1 cut(s)	107
PfeI	GAWTC	3 cut(s)	101, 410, 425
PkrI	GCNGC	3 cut(s)	172, 213, 499
PleI	GAGTC	2 cut(s)	618, 742
PpsI	GAGTC	2 cut(s)	618, 742
Ppu21I	YACGTR	1 cut(s)	953
Psp6I	CCWGG	1 cut(s)	843
PspFI	CCCAGC	1 cut(s)	544
PspGI	CCWGG	1 cut(s)	843
PspN4I	GGNNCC	2 cut(s)	621, 823
PvuII	CAGCTG	1 cut(s)	548
RsaI	GTAC	2 cut(s)	823, 930
RsaNI	GTAC	2 cut(s)	822, 929
RseI	CAYNNNNRTG	1 cut(s)	806
SaqAI	TTAA	2 cut(s)	857, 893
SatI	GCNGC	3 cut(s)	171, 212, 498
Sau3AI	GATC	2 cut(s)	49, 130
SchI	GAGTC	2 cut(s)	619, 742
ScrFI	CCNGG	1 cut(s)	845
SduI	GDGCHC	4 cut(s)	268, 624, 919, 958
SfaNI	GCATC	1 cut(s)	676
SfcI	CTRYAG	1 cut(s)	405
SmiMI	CAYNNNNRTG	1 cut(s)	806
SmlI	CTYRAG	5 cut(s)	245, 289, 596, 696, 856
SmoI	CTYRAG	5 cut(s)	245, 289, 596, 696, 856
SpeI	ACTAGT	1 cut(s)	11
Sse9I	AATT	2 cut(s)	441, 934
SsiI	CCGC	4 cut(s)	318, 573, 841, 946
SspMI	CTAG	5 cut(s)	12, 105, 215, 644, 780
StyD4I	CCNGG	1 cut(s)	843
StyI	CCWWGG	1 cut(s)	801
TaaI	ACNGT	4 cut(s)	113, 164, 224, 666
TaiI	ACGT	1 cut(s)	955
TaqI	TCGA	3 cut(s)	69, 226, 740
TasI	AATT	2 cut(s)	441, 934
TatI	WGTACW	1 cut(s)	928
TfiI	GAWTC	3 cut(s)	101, 410, 425
Tru1I	TTAA	2 cut(s)	857, 893
Tru9I	TTAA	2 cut(s)	857, 893
TscAI	CASTG	1 cut(s)	52
TseFI	GTSAC	1 cut(s)	107
TseI	GCWGC	3 cut(s)	170, 211, 497
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	4 cut(s)	87, 401, 573, 753
TspGWI	ACGGA	1 cut(s)	569
TspRI	CASTG	1 cut(s)	52
Vha464I	CTTAAG	1 cut(s)	856
XcmI	CCANNNNNNNNNTGG	1 cut(s)	317
XspI	CTAG	5 cut(s)	12, 105, 215, 644, 780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.