Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010399

Physical Location & Seq

Genomic Coordinates Forward (+)

2661642 .. 2663627

Gene Structure 1986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G08270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGCGTTTGCAAAAATGATGTTTCTTTTCGGAAAATTTCAGCAGGGTGTTGGTGTTCTAGCAAAGAGTACCACTTTTGCTAAGAATCCAAGGCAACTGCAATTTGAAGCCGACATTAACAAATTGTTTATGTTTACAAGCTATAATCGTTTGGGACGAGATGCTGAGGAGGCTGATGCTGAAGAGATTATTGAGATGGCTGGTAAAGCCACTTTCTCTGAGCAACAGAAGCAAGTTCAGGAGAACATTCACTACCAACTCCAAAATTTTTGTTCTTCAATGAACGAGATTCTTCTTACCAATATTGACAAAACAAAGGATCTAAATGAGCCAGGATCAGAATCGAGAAGGGACAACATTGTCCCAGCTGCAGACAAGCCCATTGTTCCTGAGACTAAACCGCTGAAACTCGATGAAGTCTCACATCGATTAAAGGATCGAGTTGGGTACACCCTTGAGATCAAACCATCGTTAATACCTCACAAAGACGCGGGTCAAGGTTGTTTTATAGAAGGTGAAGCAGATGTGGGAGCTGTCCTAGCCTTTTACCCTGGTGTGATTTACTCTCCTGCATTCCACAGATACATTCCCGGGTATCCAAATGTTGATGCACAGAACTCATATCTGATCACTGGGTATGATGGGACGGTAATAAACGCTCAACCTTGGGGTCGTGGAGGAATATCTCGGGAAGTATGGAACGGCTCCTTTACAACGCCTGAGATCAGAACAGAAGCTACAACCACGGAAAACAGTTCAGATAAGGTATGGAAGATGCTGAGTAGGCCGCTTGAAGGTTCAGGTGGTGTAGAAGCGGTTATTGAAATGAGAAACCCGTTAGCGTTTGGTCATTTCATCAACCACCCTGGTAAAGAAATGGAATCTAATGTCATGATTTGCCCTTACGACTTCCTGTTGTCAGAGACAGAGATGCGAGCTTACATTCCGAATGTAGCTTTCGGGAACACAGGAGATGTAAAGATGGGGAGATTTGAAAGCTTCTTGTCTAGGACAGGAAGTAATAGCAGTTTGGATGCTCATGTGCTGAAGACAATTGTTCTCGTGGCTACAAAAGCGTTGTGCAATGAGGAACTGATGCTGAATTACAGGCTGAGCAATTCCGAGAAAAGACTCGAGTGGTATATTCCACTTGATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

386

Amino Acids

43.3

Weight (kDa)

5.3

Isoelectric Point (pI)

40.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08270 AT5G23200
fragaria_vesca	FvH4_4g36990 FvH4_4g36990
malus_domestica	MD13G1004400.v1.1 MD16G1003200.v1.1
prunus_persica	Prupe.1G348200_v2.0.a1 Prupe.1G348200_v2.0.a1 Prupe.1G348200_v2.0.a1
pyrus_communis	pycom13g00380
rosa_chinensis	RchiOBHm_Chr4g0446781
rosa_laevigata	RLG00000005632
rosa_multiflora	Rmu_co8491361.1_g000001 Rmu_sc0001753.1_g000030
rosa_roxburghii	Rroxscaffold_5G00387100
rosa_rugosa	Rorug04G0374500
rosa_samantha	Rh4AG436000 Rh4BG444800 Rh4CG462100 Rh4DG443800
rosa_wichuraiana	Rw4G037270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	359
AccII	CGCG	1 cut(s)	491
AciI	CCGC	4 cut(s)	401, 491, 788, 815
AclWI	GGATC	3 cut(s)	327, 343, 444
AcsI	RAATTY	2 cut(s)	35, 265
AcuI	CTGAAG	2 cut(s)	201, 1067
AfaI	GTAC	2 cut(s)	70, 449
AfiI	CCNNNNNNNGG	1 cut(s)	794
AgsI	TTSAA	5 cut(s)	107, 279, 794, 824, 995
AjnI	CCWGG	3 cut(s)	331, 550, 865
AluBI	AGCT	7 cut(s)	141, 368, 533, 737, 938, 956, 999
AluI	AGCT	7 cut(s)	141, 368, 533, 737, 938, 956, 999
Alw26I	GTCTC	3 cut(s)	386, 424, 917
AlwI	GGATC	3 cut(s)	327, 343, 444
Ama87I	CYCGRG	3 cut(s)	590, 687, 1133
AoxI	GGCC	1 cut(s)	785
ApeKI	GCWGC	1 cut(s)	368
ApoI	RAATTY	2 cut(s)	35, 265
AsuC2I	CCSGG	2 cut(s)	591, 592
AsuHPI	GGTGA	1 cut(s)	527
AvaI	CYCGRG	3 cut(s)	590, 687, 1133
BauI	CACGAG	1 cut(s)	1061
BbsI	GAAGAC	1 cut(s)	1055
BbvCI	CCTCAGC	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	355
BccI	CCATC	4 cut(s)	190, 475, 635, 976
BceAI	ACGGC	1 cut(s)	718
BciT130I	CCWGG	3 cut(s)	333, 552, 867
BciVI	GTATCC	1 cut(s)	606
BclI	TGATCA	1 cut(s)	627
BcnI	CCSGG	2 cut(s)	591, 592
BcoDI	GTCTC	3 cut(s)	386, 424, 917
BfaI	CTAG	3 cut(s)	59, 539, 1008
BfmI	CTRYAG	1 cut(s)	369
BfuI	GTATCC	1 cut(s)	606
BisI	GCNGC	2 cut(s)	369, 788
BlpI	GCTNAGC	1 cut(s)	1112
BlsI	GCNGC	2 cut(s)	370, 789
Bme1390I	CCNGG	5 cut(s)	333, 552, 591, 592, 867
BmeT110I	CYCGRG	3 cut(s)	590, 687, 1133
BmiI	GGNNCC	1 cut(s)	706
BmrFI	CCNGG	5 cut(s)	333, 552, 591, 592, 867
BmrI	ACTGGG	1 cut(s)	642
BmsI	GCATC	7 cut(s)	151, 166, 598, 765, 921, 1024, 1086
BmuI	ACTGGG	1 cut(s)	642
BoxI	GACNNNNGTC	1 cut(s)	492
BpiI	GAAGAC	1 cut(s)	1055
Bpu10I	CCTNAGC	1 cut(s)	165
Bpu1102I	GCTNAGC	1 cut(s)	1112
BpuEI	CTTGAG	1 cut(s)	476
BpuMI	CCSGG	2 cut(s)	591, 592
Bsa29I	ATCGAT	1 cut(s)	427
BsaBI	GATNNNNATC	1 cut(s)	340
BsaJI	CCNNGG	6 cut(s)	89, 550, 590, 665, 744, 865
Bsc4I	CCNNNNNNNGG	1 cut(s)	794
Bse1I	ACTGG	1 cut(s)	637
Bse3DI	GCAATG	1 cut(s)	1090
Bse8I	GATNNNNATC	1 cut(s)	340
BseBI	CCWGG	3 cut(s)	333, 552, 867
BseCI	ATCGAT	1 cut(s)	427
BseDI	CCNNGG	6 cut(s)	89, 550, 590, 665, 744, 865
BseGI	GGATG	1 cut(s)	1039
BseJI	GATNNNNATC	1 cut(s)	340
BseLI	CCNNNNNNNGG	1 cut(s)	794
BseMI	GCAATG	1 cut(s)	1090
BseMII	CTCAG	6 cut(s)	156, 210, 381, 711, 770, 1103
BseNI	ACTGG	1 cut(s)	637
BseRI	GAGGAG	1 cut(s)	182
BseXI	GCAGC	1 cut(s)	355
BseYI	CCCAGC	1 cut(s)	364
Bsh1236I	CGCG	1 cut(s)	491
BshFI	GGCC	1 cut(s)	787
BshVI	ATCGAT	1 cut(s)	427
BsiHKCI	CYCGRG	3 cut(s)	590, 687, 1133
BsiSI	CCGG	1 cut(s)	591
BslFI	GGGAC	4 cut(s)	168, 347, 365, 658
BslI	CCNNNNNNNGG	1 cut(s)	794
BsmAI	GTCTC	3 cut(s)	386, 424, 917
BsmFI	GGGAC	4 cut(s)	168, 347, 365, 658
BsmI	GAATGC	1 cut(s)	572
BsnI	GGCC	1 cut(s)	787
BsoBI	CYCGRG	3 cut(s)	590, 687, 1133
Bsp143I	GATC	6 cut(s)	319, 335, 436, 459, 627, 723
Bsp1720I	GCTNAGC	1 cut(s)	1112
BspACI	CCGC	4 cut(s)	401, 491, 788, 815
BspANI	GGCC	1 cut(s)	787
BspCNI	CTCAG	6 cut(s)	157, 211, 382, 712, 771, 1104
BspDI	ATCGAT	1 cut(s)	427
BspFNI	CGCG	1 cut(s)	491
BspHI	TCATGA	1 cut(s)	891
BspLI	GGNNCC	1 cut(s)	706
BspMAI	CTGCAG	1 cut(s)	373
BspPI	GGATC	3 cut(s)	327, 343, 444
BsrDI	GCAATG	1 cut(s)	1090
BsrI	ACTGG	1 cut(s)	637
BssECI	CCNNGG	6 cut(s)	89, 550, 590, 665, 744, 865
BssMI	GATC	6 cut(s)	319, 335, 436, 459, 627, 723
BssSI	CACGAG	1 cut(s)	1061
BssT1I	CCWWGG	2 cut(s)	89, 665
Bst2BI	CACGAG	1 cut(s)	1061
Bst2UI	CCWGG	3 cut(s)	333, 552, 867
Bst4CI	ACNGT	2 cut(s)	649, 755
Bst6I	CTCTTC	1 cut(s)	177
BstC8I	GCNNGC	1 cut(s)	936
BstDEI	CTNAG	7 cut(s)	81, 165, 219, 390, 720, 779, 1112
BstDSI	CCRYGG	1 cut(s)	744
BstF5I	GGATG	1 cut(s)	1039
BstFNI	CGCG	1 cut(s)	491
BstKTI	GATC	6 cut(s)	322, 338, 439, 462, 630, 726
BstMAI	GTCTC	3 cut(s)	386, 424, 917
BstMBI	GATC	6 cut(s)	319, 335, 436, 459, 627, 723
BstMWI	GCNNNNNNNGC	6 cut(s)	170, 206, 229, 539, 784, 1073
BstNI	CCWGG	3 cut(s)	333, 552, 867
BstPAI	GACNNNNGTC	1 cut(s)	492
BstSCI	CCNGG	5 cut(s)	331, 550, 589, 590, 865
BstSFI	CTRYAG	1 cut(s)	369
BstUI	CGCG	1 cut(s)	491
BstV1I	GCAGC	1 cut(s)	355
BstV2I	GAAGAC	1 cut(s)	1055
BstX2I	RGATCY	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	319
Bsu15I	ATCGAT	1 cut(s)	427
BsuI	GTATCC	1 cut(s)	606
BsuRI	GGCC	1 cut(s)	787
BsuTUI	ATCGAT	1 cut(s)	427
BtgI	CCRYGG	1 cut(s)	744
BtsCI	GGATG	1 cut(s)	1039
BtsIMutI	CAGTG	1 cut(s)	630
Cac8I	GCNNGC	1 cut(s)	936
CciI	TCATGA	1 cut(s)	891
Cfr9I	CCCGGG	1 cut(s)	590
ClaI	ATCGAT	1 cut(s)	427
CseI	GACGC	1 cut(s)	497
Csp6I	GTAC	2 cut(s)	69, 448
CviAII	CATG	2 cut(s)	892, 1040
CviQI	GTAC	2 cut(s)	69, 448
DdeI	CTNAG	7 cut(s)	81, 165, 219, 390, 720, 779, 1112
DpnI	GATC	6 cut(s)	321, 337, 438, 461, 629, 725
DpnII	GATC	6 cut(s)	319, 335, 436, 459, 627, 723
DrdI	GACNNNNNNGTC	1 cut(s)	359
DseDI	GACNNNNNNGTC	1 cut(s)	359
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
Eco130I	CCWWGG	2 cut(s)	89, 665
Eco57I	CTGAAG	2 cut(s)	201, 1067
Eco88I	CYCGRG	3 cut(s)	590, 687, 1133
EcoRII	CCWGG	3 cut(s)	331, 550, 865
EcoT14I	CCWWGG	2 cut(s)	89, 665
ErhI	CCWWGG	2 cut(s)	89, 665
FaeI	CATG	2 cut(s)	895, 1043
FaqI	GGGAC	4 cut(s)	168, 347, 365, 658
FatI	CATG	2 cut(s)	891, 1039
FauI	CCCGC	1 cut(s)	484
FbaI	TGATCA	1 cut(s)	627
Fnu4HI	GCNGC	2 cut(s)	369, 788
FokI	GGATG	1 cut(s)	1046
Fsp4HI	GCNGC	2 cut(s)	369, 788
FspBI	CTAG	3 cut(s)	59, 539, 1008
GluI	GCNGC	2 cut(s)	369, 788
GsaI	CCCAGC	1 cut(s)	368
HaeIII	GGCC	1 cut(s)	787
HapII	CCGG	1 cut(s)	591
HgaI	GACGC	1 cut(s)	497
Hin1II	CATG	2 cut(s)	895, 1043
HindIII	AAGCTT	1 cut(s)	997
HinfI	GANTC	5 cut(s)	85, 289, 341, 881, 1131
HpaII	CCGG	1 cut(s)	591
HphI	GGTGA	1 cut(s)	527
Hpy166II	GTNNAC	2 cut(s)	135, 450
Hpy188I	TCNGA	9 cut(s)	32, 220, 340, 627, 728, 760, 922, 948, 1123
Hpy188III	TCNNGA	6 cut(s)	239, 345, 389, 689, 892, 961
Hpy8I	GTNNAC	2 cut(s)	135, 450
HpyAV	CCTTC	3 cut(s)	342, 506, 788
HpyCH4III	ACNGT	2 cut(s)	649, 755
HpyCH4V	TGCA	6 cut(s)	11, 100, 371, 572, 611, 1083
HpyF10VI	GCNNNNNNNGC	6 cut(s)	170, 206, 229, 539, 784, 1073
HpyF3I	CTNAG	7 cut(s)	81, 165, 219, 390, 720, 779, 1112
Hsp92II	CATG	2 cut(s)	895, 1043
Ksp22I	TGATCA	1 cut(s)	627
Kzo9I	GATC	6 cut(s)	319, 335, 436, 459, 627, 723
LmnI	GCTCC	2 cut(s)	530, 710
Lsp1109I	GCAGC	1 cut(s)	355
LweI	GCATC	7 cut(s)	151, 166, 598, 765, 921, 1024, 1086
MaeI	CTAG	3 cut(s)	59, 539, 1008
MalI	GATC	6 cut(s)	321, 337, 438, 461, 629, 725
MboI	GATC	6 cut(s)	319, 335, 436, 459, 627, 723
MboII	GAAGA	5 cut(s)	194, 267, 284, 784, 1060
MfeI	CAATTG	1 cut(s)	1053
MflI	RGATCY	1 cut(s)	319
MluCI	AATT	7 cut(s)	35, 101, 122, 265, 1053, 1102, 1117
MlyI	GAGTC	1 cut(s)	1125
MnlI	CCTC	5 cut(s)	160, 163, 489, 671, 1081
MseI	TTAA	3 cut(s)	117, 431, 473
MspA1I	CMGCKG	2 cut(s)	368, 403
MspI	CCGG	1 cut(s)	591
MspR9I	CCNGG	5 cut(s)	333, 552, 591, 592, 867
MunI	CAATTG	1 cut(s)	1053
Mva1269I	GAATGC	1 cut(s)	572
MvaI	CCWGG	3 cut(s)	333, 552, 867
MvnI	CGCG	1 cut(s)	491
MwoI	GCNNNNNNNGC	6 cut(s)	170, 206, 229, 539, 784, 1073
NciI	CCSGG	2 cut(s)	591, 592
NdeII	GATC	6 cut(s)	319, 335, 436, 459, 627, 723
NlaIII	CATG	2 cut(s)	895, 1043
NlaIV	GGNNCC	1 cut(s)	706
PaeR7I	CTCGAG	1 cut(s)	1133
PagI	TCATGA	1 cut(s)	891
PcsI	WCGNNNNNNNCGW	1 cut(s)	154
PctI	GAATGC	1 cut(s)	572
PfeI	GAWTC	4 cut(s)	85, 289, 341, 881
PkrI	GCNGC	2 cut(s)	370, 789
PleI	GAGTC	1 cut(s)	1125
PpsI	GAGTC	1 cut(s)	1125
PshAI	GACNNNNGTC	1 cut(s)	492
Psp6I	CCWGG	3 cut(s)	331, 550, 865
PspFI	CCCAGC	1 cut(s)	364
PspGI	CCWGG	3 cut(s)	331, 550, 865
PspN4I	GGNNCC	1 cut(s)	706
PspXI	VCTCGAGB	1 cut(s)	1133
PsrI	GAACNNNNNNTAC	4 cut(s)	236, 268, 721, 753
PstI	CTGCAG	1 cut(s)	373
PsuI	RGATCY	1 cut(s)	319
PvuII	CAGCTG	1 cut(s)	368
RsaI	GTAC	2 cut(s)	70, 449
RsaNI	GTAC	2 cut(s)	69, 448
SaqAI	TTAA	3 cut(s)	117, 431, 473
SatI	GCNGC	2 cut(s)	369, 788
Sau3AI	GATC	6 cut(s)	319, 335, 436, 459, 627, 723
SchI	GAGTC	1 cut(s)	1125
ScrFI	CCNGG	5 cut(s)	333, 552, 591, 592, 867
SfaNI	GCATC	7 cut(s)	151, 166, 598, 765, 921, 1024, 1086
SfcI	CTRYAG	1 cut(s)	369
Sfr274I	CTCGAG	1 cut(s)	1133
SlaI	CTCGAG	1 cut(s)	1133
SmaI	CCCGGG	1 cut(s)	592
SmlI	CTYRAG	2 cut(s)	455, 1133
SmoI	CTYRAG	2 cut(s)	455, 1133
Sse9I	AATT	7 cut(s)	35, 101, 122, 265, 1053, 1102, 1117
SsiI	CCGC	4 cut(s)	401, 491, 788, 815
SspI	AATATT	1 cut(s)	304
SspMI	CTAG	3 cut(s)	59, 539, 1008
StyD4I	CCNGG	5 cut(s)	331, 550, 589, 590, 865
StyI	CCWWGG	2 cut(s)	89, 665
TaaI	ACNGT	2 cut(s)	649, 755
TaqI	TCGA	5 cut(s)	344, 411, 427, 439, 1134
TasI	AATT	7 cut(s)	35, 101, 122, 265, 1053, 1102, 1117
TauI	GCSGC	1 cut(s)	790
TfiI	GAWTC	4 cut(s)	85, 289, 341, 881
Tru1I	TTAA	3 cut(s)	117, 431, 473
Tru9I	TTAA	3 cut(s)	117, 431, 473
TscAI	CASTG	1 cut(s)	637
TseI	GCWGC	1 cut(s)	368
TspDTI	ATGAA	3 cut(s)	296, 429, 844
TspGWI	ACGGA	1 cut(s)	761
TspMI	CCCGGG	1 cut(s)	590
TspRI	CASTG	1 cut(s)	637
XapI	RAATTY	2 cut(s)	35, 265
XhoI	CTCGAG	1 cut(s)	1133
XmaI	CCCGGG	1 cut(s)	590
XspI	CTAG	3 cut(s)	59, 539, 1008

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.