AT5G23200

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0010399
Physical Location & Seq
Forward (+)
7807183 .. 7809283
2101 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G23200.1

Sequence Viewer

Length: 1200 bp
ATGGCGACTCTTTTCAACAAATTTCAGCAGGCTGTTGGAGTTCTTGCCAAGAGTACCACATTTGCTAAGAACCCAAGGCAACTGCAGTTTGAAGCAGACGTTAACAAACTCTTTATGTATACAAGCTATAACCGGTTGGGACGAGAAGCTGAGGAGACTGATGCAGAGGAGATCATTGAGATGGCTGGTAAAGCCACTTTATCTGAGCAGCAGAAGCAAGTTCAAGAGAACATTCACTACCAAGTTGAAAAATTCTGCTCTTTGATGGATGGAATCCTTCTTCCTGATGTTAGGAGGAACGAGTCGGGGTCACAATCAACAAGCCCTCGTCCTCCTCGTAGAAGTGGTCTTACTTTCGCCATTGGTAGTAATAATGCTTTTCCACATGCAGATCAGCCCCTTGTTCCCGAGACAAAGCCTTTGAAACTCAATGACGTCTCACAGAGATTAATGGATCAAATGGGTTACACCCTCGAGACCAAACCGTCTGTAATACCTCACAAAGACGCTGGTCAAGGTTGTTTTATCAAAGGCGAGGCAGATGTTGGAACCGTCTTAGCCTTTTACCCTGGAGTTATTTACTCTCCTGCTTTCTACAAGTACATACCCGGGTACCCGAAGGTTGATTCACAGAACTCATATCTCATCACCAGGTATGATGGGACTGTAATAAATGCTCAACCTTGGGGTCTTGGGGGAGAATCAAGGGAAGCATGGAACGGGTCCTACACACCTGCGGTCAAAGCAAACACCAAAACCGCAGAAAACGGGTCAGACAGGTTATGGAAAGCGTTGAGCAAGCCTCTCGAAGGTTCGGGTAAAGGAAAAGAGGTTCTTGAGAGGAGAAATCCGTTGGCTTTTGGTCACTTAGCTAACCACCCAGCGAAAGAGATGACTCCAAACGTTATGATATGTCCTTATGACTTCCCTTTGATGGCGAAAGATCTGCGGCCTTACATTCCGAATATATCTTTTGGGGATTCTGGAGAAATAAAGATGAAAAGATTTGGAAGTTTCTGGTTTAAGACAGGGAGTAAAAACGGGTTAGAAGCTCCGGTTCTGAAGACACTGGTCTTGGTGGCAACGAGGTCGTTGTGTAATGAGGAACTTTTGCTGAATTACAGGCTGAGCAACTCTAAGAGACGACCAGATTGGTATACTCCGGTTAACGAGGAGGAAGATAGGAGAAGATGGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

399

Amino Acids

44.85

Weight (kDa)

8.9

Isoelectric Point (pI)

53.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 742
AasI GACNNNNNNGTC 1 cut(s) 484
AatII GACGTC 1 cut(s) 438
Acc36I ACCTGC 1 cut(s) 742
Acc65I GGTACC 1 cut(s) 612
AccB1I GGYRCC 1 cut(s) 612
AccI GTMKAC 2 cut(s) 119, 1157
AciI CCGC 3 cut(s) 737, 759, 949
AclI AACGTT 1 cut(s) 903
AclWI GGATC 1 cut(s) 462
AcsI RAATTY 2 cut(s) 20, 251
AcuI CTGAAG 1 cut(s) 1082
AcyI GRCGYC 1 cut(s) 435
AfaI GTAC 3 cut(s) 55, 602, 614
AfiI CCNNNNNNNGG 2 cut(s) 809, 934
AgeI ACCGGT 1 cut(s) 132
AgsI TTSAA 5 cut(s) 16, 92, 224, 248, 424
AjnI CCWGG 2 cut(s) 568, 650
AloI GAACNNNNNNTCC 2 cut(s) 816, 848
AluBI AGCT 5 cut(s) 126, 149, 872, 1052, 1197
AluI AGCT 5 cut(s) 126, 149, 872, 1052, 1197
Alw26I GTCTC 5 cut(s) 149, 404, 442, 470, 1135
AlwI GGATC 1 cut(s) 462
Ama87I CYCGRG 3 cut(s) 407, 473, 608
AoxI GGCC 1 cut(s) 950
ApeKI GCWGC 1 cut(s) 208
ApoI RAATTY 2 cut(s) 20, 251
ArsI GACNNNNNNTTYG 2 cut(s) 403, 435
AseI ATTAAT 1 cut(s) 449
AsiGI ACCGGT 1 cut(s) 132
Asp718I GGTACC 1 cut(s) 612
AspS9I GGNCC 1 cut(s) 723
AsuC2I CCSGG 2 cut(s) 609, 610
AsuHPI GGTGA 1 cut(s) 640
AvaI CYCGRG 3 cut(s) 407, 473, 608
AvaII GGWCC 1 cut(s) 723
BaeI ACNNNNGTAYC 2 cut(s) 596, 629
BanI GGYRCC 1 cut(s) 612
BarI GAAGNNNNNNTAC 2 cut(s) 334, 366
BbsI GAAGAC 1 cut(s) 1070
BbvCI CCTCAGC 1 cut(s) 150
BbvI GCAGC 1 cut(s) 220
BccI CCATC 6 cut(s) 175, 259, 263, 653, 928, 1185
BcgI CGANNNNNNTGC 6 cut(s) 787, 821, 928, 962, 1071, 1105
BciT130I CCWGG 2 cut(s) 570, 652
BcnI CCSGG 2 cut(s) 609, 610
BcoDI GTCTC 5 cut(s) 149, 404, 442, 470, 1135
BfmI CTRYAG 1 cut(s) 83
BfuAI ACCTGC 1 cut(s) 742
BglII AGATCT 1 cut(s) 943
BisI GCNGC 2 cut(s) 209, 950
BlpI GCTNAGC 1 cut(s) 1127
BlsI GCNGC 2 cut(s) 210, 951
Bme1390I CCNGG 4 cut(s) 570, 609, 610, 652
Bme18I GGWCC 1 cut(s) 723
BmeT110I CYCGRG 3 cut(s) 407, 473, 608
BmgT120I GGNCC 1 cut(s) 723
BmiI GGNNCC 3 cut(s) 550, 614, 724
BmrFI CCNGG 4 cut(s) 570, 609, 610, 652
BmsI GCATC 1 cut(s) 151
BoxI GACNNNNGTC 2 cut(s) 510, 1070
BpiI GAAGAC 1 cut(s) 1070
BplI GAGNNNNNCTC 2 cut(s) 787, 819
BpmI CTGGAG 2 cut(s) 591, 1005
Bpu10I CCTNAGC 1 cut(s) 150
Bpu1102I GCTNAGC 1 cut(s) 1127
BpuEI CTTGAG 1 cut(s) 857
BpuMI CCSGG 2 cut(s) 609, 610
BsaHI GRCGYC 1 cut(s) 435
BsaI GGTCTC 1 cut(s) 470
BsaJI CCNNGG 4 cut(s) 74, 568, 608, 683
BsaWI WCCGGW 3 cut(s) 132, 1054, 1162
Bsc4I CCNNNNNNNGG 2 cut(s) 809, 934
Bse118I RCCGGY 1 cut(s) 132
Bse1I ACTGG 1 cut(s) 1074
BseBI CCWGG 2 cut(s) 570, 652
BseDI CCNNGG 4 cut(s) 74, 568, 608, 683
BseGI GGATG 1 cut(s) 274
BseLI CCNNNNNNNGG 2 cut(s) 809, 934
BseMII CTCAG 3 cut(s) 141, 195, 1118
BseNI ACTGG 1 cut(s) 1074
BseRI GAGGAG 5 cut(s) 167, 182, 324, 856, 1187
BseXI GCAGC 1 cut(s) 220
BseYI CCCAGC 1 cut(s) 880
BshFI GGCC 1 cut(s) 952
BshNI GGYRCC 1 cut(s) 612
BshTI ACCGGT 1 cut(s) 132
BsiHKCI CYCGRG 3 cut(s) 407, 473, 608
BsiSI CCGG 4 cut(s) 133, 609, 1055, 1163
BslFI GGGAC 2 cut(s) 153, 676
BslI CCNNNNNNNGG 2 cut(s) 809, 934
BsmAI GTCTC 5 cut(s) 149, 404, 442, 470, 1135
BsmBI CGTCTC 2 cut(s) 442, 1135
BsmFI GGGAC 2 cut(s) 153, 676
BsnI GGCC 1 cut(s) 952
Bso31I GGTCTC 1 cut(s) 470
BsoBI CYCGRG 3 cut(s) 407, 473, 608
Bsp143I GATC 4 cut(s) 171, 391, 454, 943
Bsp1720I GCTNAGC 1 cut(s) 1127
BspACI CCGC 3 cut(s) 737, 759, 949
BspANI GGCC 1 cut(s) 952
BspCNI CTCAG 3 cut(s) 142, 196, 1119
BspLI GGNNCC 3 cut(s) 550, 614, 724
BspMAI CTGCAG 1 cut(s) 87
BspMI ACCTGC 1 cut(s) 742
BspPI GGATC 1 cut(s) 462
BspT107I GGYRCC 1 cut(s) 612
BspTNI GGTCTC 1 cut(s) 470
BsrFI RCCGGY 1 cut(s) 132
BsrI ACTGG 1 cut(s) 1074
BssAI RCCGGY 1 cut(s) 132
BssECI CCNNGG 4 cut(s) 74, 568, 608, 683
BssMI GATC 4 cut(s) 171, 391, 454, 943
BssNAI GTATAC 2 cut(s) 120, 1158
BssNI GRCGYC 1 cut(s) 435
BssT1I CCWWGG 2 cut(s) 74, 683
Bst1107I GTATAC 2 cut(s) 120, 1158
Bst2UI CCWGG 2 cut(s) 570, 652
Bst4CI ACNGT 3 cut(s) 486, 553, 667
BstACI GRCGYC 1 cut(s) 435
BstC8I GCNNGC 2 cut(s) 30, 800
BstDEI CTNAG 7 cut(s) 66, 150, 204, 556, 868, 1127, 1137
BstENI CCTNNNNNAGG 1 cut(s) 807
BstF5I GGATG 1 cut(s) 274
BstKTI GATC 4 cut(s) 174, 394, 457, 946
BstMAI GTCTC 5 cut(s) 149, 404, 442, 470, 1135
BstMBI GATC 4 cut(s) 171, 391, 454, 943
BstMWI GCNNNNNNNGC 3 cut(s) 191, 214, 743
BstNI CCWGG 2 cut(s) 570, 652
BstNSI RCATGY 1 cut(s) 389
BstPAI GACNNNNGTC 2 cut(s) 510, 1070
BstSCI CCNGG 4 cut(s) 568, 607, 608, 650
BstSFI CTRYAG 1 cut(s) 83
BstV1I GCAGC 1 cut(s) 220
BstV2I GAAGAC 1 cut(s) 1070
BstX2I RGATCY 1 cut(s) 943
BstYI RGATCY 1 cut(s) 943
BstZ17I GTATAC 2 cut(s) 120, 1158
BsuRI GGCC 1 cut(s) 952
BtsCI GGATG 1 cut(s) 274
BtsIMutI CAGTG 1 cut(s) 1067
BveI ACCTGC 1 cut(s) 742
Cac8I GCNNGC 2 cut(s) 30, 800
Cfr10I RCCGGY 1 cut(s) 132
Cfr13I GGNCC 1 cut(s) 723
Cfr9I CCCGGG 1 cut(s) 608
CseI GACGC 1 cut(s) 515
CsiI ACCWGGT 1 cut(s) 650
Csp6I GTAC 3 cut(s) 54, 601, 613
CspAI ACCGGT 1 cut(s) 132
CviAII CATG 2 cut(s) 386, 714
CviQI GTAC 3 cut(s) 54, 601, 613
DdeI CTNAG 7 cut(s) 66, 150, 204, 556, 868, 1127, 1137
DpnI GATC 4 cut(s) 173, 393, 456, 945
DpnII GATC 4 cut(s) 171, 391, 454, 943
DrdI GACNNNNNNGTC 1 cut(s) 484
DseDI GACNNNNNNGTC 1 cut(s) 484
Eco130I CCWWGG 2 cut(s) 74, 683
Eco31I GGTCTC 1 cut(s) 470
Eco47I GGWCC 1 cut(s) 723
Eco57I CTGAAG 1 cut(s) 1082
Eco88I CYCGRG 3 cut(s) 407, 473, 608
EcoNI CCTNNNNNAGG 1 cut(s) 807
EcoO109I RGGNCCY 1 cut(s) 723
EcoRII CCWGG 2 cut(s) 568, 650
EcoT14I CCWWGG 2 cut(s) 74, 683
ErhI CCWWGG 2 cut(s) 74, 683
Esp3I CGTCTC 2 cut(s) 442, 1135
FaeI CATG 2 cut(s) 389, 717
FalI AAGNNNNNCTT 2 cut(s) 819, 851
FaqI GGGAC 2 cut(s) 153, 676
FatI CATG 2 cut(s) 385, 713
FblI GTMKAC 2 cut(s) 119, 1157
Fnu4HI GCNGC 2 cut(s) 209, 950
FokI GGATG 1 cut(s) 281
Fsp4HI GCNGC 2 cut(s) 209, 950
GluI GCNGC 2 cut(s) 209, 950
GsaI CCCAGC 1 cut(s) 884
GsuI CTGGAG 2 cut(s) 591, 1005
HaeIII GGCC 1 cut(s) 952
HapII CCGG 4 cut(s) 133, 609, 1055, 1163
HgaI GACGC 1 cut(s) 515
Hin1I GRCGYC 1 cut(s) 435
Hin1II CATG 2 cut(s) 389, 717
HincII GTYRAC 2 cut(s) 103, 1168
HindII GTYRAC 2 cut(s) 103, 1168
HinfI GANTC 7 cut(s) 7, 273, 302, 626, 701, 895, 980
HpaI GTTAAC 2 cut(s) 103, 1168
HpaII CCGG 4 cut(s) 133, 609, 1055, 1163
HphI GGTGA 1 cut(s) 640
Hpy166II GTNNAC 4 cut(s) 103, 120, 1158, 1168
Hpy188I TCNGA 4 cut(s) 205, 775, 963, 1062
Hpy188III TCNNGA 7 cut(s) 224, 284, 407, 475, 806, 836, 984
Hpy8I GTNNAC 4 cut(s) 103, 120, 1158, 1168
HpyAV CCTTC 3 cut(s) 287, 613, 803
HpyCH4III ACNGT 3 cut(s) 486, 553, 667
HpyCH4IV ACGT 3 cut(s) 99, 435, 903
HpyCH4V TGCA 3 cut(s) 85, 164, 389
HpyF10VI GCNNNNNNNGC 3 cut(s) 191, 214, 743
HpyF3I CTNAG 7 cut(s) 66, 150, 204, 556, 868, 1127, 1137
HpySE526I ACGT 3 cut(s) 99, 435, 903
Hsp92I GRCGYC 1 cut(s) 435
Hsp92II CATG 2 cut(s) 389, 717
KpnI GGTACC 1 cut(s) 616
KspAI GTTAAC 2 cut(s) 103, 1168
Kzo9I GATC 4 cut(s) 171, 391, 454, 943
LmnI GCTCC 2 cut(s) 1057, 1194
Lsp1109I GCAGC 1 cut(s) 220
LweI GCATC 1 cut(s) 151
MabI ACCWGGT 1 cut(s) 650
MaeII ACGT 3 cut(s) 99, 435, 903
MaeIII GTNAC 3 cut(s) 309, 464, 863
MalI GATC 4 cut(s) 173, 393, 456, 945
MboI GATC 4 cut(s) 171, 391, 454, 943
MboII GAAGA 4 cut(s) 272, 1075, 1190, 1200
MflI RGATCY 1 cut(s) 943
MluCI AATT 3 cut(s) 20, 251, 1117
MlyI GAGTC 2 cut(s) 311, 889
MmeI TCCRAC 2 cut(s) 16, 526
MseI TTAA 4 cut(s) 102, 449, 1023, 1167
MslI CAYNNNNRTG 1 cut(s) 179
MspI CCGG 4 cut(s) 133, 609, 1055, 1163
MspR9I CCNGG 4 cut(s) 570, 609, 610, 652
MvaI CCWGG 2 cut(s) 570, 652
MwoI GCNNNNNNNGC 3 cut(s) 191, 214, 743
NciI CCSGG 2 cut(s) 609, 610
NdeII GATC 4 cut(s) 171, 391, 454, 943
NlaIII CATG 2 cut(s) 389, 717
NlaIV GGNNCC 3 cut(s) 550, 614, 724
NmuCI GTSAC 2 cut(s) 309, 863
NspI RCATGY 1 cut(s) 389
PaeR7I CTCGAG 1 cut(s) 473
PaqCI CACCTGC 1 cut(s) 742
PcsI WCGNNNNNNNCGW 1 cut(s) 334
PfeI GAWTC 4 cut(s) 273, 626, 701, 980
PinAI ACCGGT 1 cut(s) 132
PkrI GCNGC 2 cut(s) 210, 951
PleI GAGTC 2 cut(s) 310, 889
PpsI GAGTC 2 cut(s) 310, 889
PpuMI RGGWCCY 1 cut(s) 723
PshAI GACNNNNGTC 2 cut(s) 510, 1070
PshBI ATTAAT 1 cut(s) 449
Psp1406I AACGTT 1 cut(s) 903
Psp5II RGGWCCY 1 cut(s) 723
Psp6I CCWGG 2 cut(s) 568, 650
PspFI CCCAGC 1 cut(s) 880
PspGI CCWGG 2 cut(s) 568, 650
PspN4I GGNNCC 3 cut(s) 550, 614, 724
PspPI GGNCC 1 cut(s) 723
PspPPI RGGWCCY 1 cut(s) 723
PsrI GAACNNNNNNTAC 4 cut(s) 221, 253, 710, 742
PstI CTGCAG 1 cut(s) 87
PsuI RGATCY 1 cut(s) 943
RsaI GTAC 3 cut(s) 55, 602, 614
RsaNI GTAC 3 cut(s) 54, 601, 613
RseI CAYNNNNRTG 1 cut(s) 179
SaqAI TTAA 4 cut(s) 102, 449, 1023, 1167
SatI GCNGC 2 cut(s) 209, 950
Sau3AI GATC 4 cut(s) 171, 391, 454, 943
Sau96I GGNCC 1 cut(s) 723
SchI GAGTC 2 cut(s) 311, 889
ScrFI CCNGG 4 cut(s) 570, 609, 610, 652
SexAI ACCWGGT 1 cut(s) 650
SfaNI GCATC 1 cut(s) 151
SfcI CTRYAG 1 cut(s) 83
Sfr274I CTCGAG 1 cut(s) 473
SinI GGWCC 1 cut(s) 723
SlaI CTCGAG 1 cut(s) 473
SmaI CCCGGG 1 cut(s) 610
SmiMI CAYNNNNRTG 1 cut(s) 179
SmlI CTYRAG 2 cut(s) 473, 836
SmoI CTYRAG 2 cut(s) 473, 836
Sse9I AATT 3 cut(s) 20, 251, 1117
SsiI CCGC 3 cut(s) 737, 759, 949
StyD4I CCNGG 4 cut(s) 568, 607, 608, 650
StyI CCWWGG 2 cut(s) 74, 683
TaaI ACNGT 3 cut(s) 486, 553, 667
TaiI ACGT 3 cut(s) 102, 438, 906
TaqI TCGA 2 cut(s) 474, 807
TasI AATT 3 cut(s) 20, 251, 1117
TatI WGTACW 1 cut(s) 600
TauI GCSGC 1 cut(s) 952
TfiI GAWTC 4 cut(s) 273, 626, 701, 980
Tru1I TTAA 4 cut(s) 102, 449, 1023, 1167
Tru9I TTAA 4 cut(s) 102, 449, 1023, 1167
TscAI CASTG 1 cut(s) 1074
TseFI GTSAC 2 cut(s) 309, 863
TseI GCWGC 1 cut(s) 208
Tsp45I GTSAC 2 cut(s) 309, 863
TspDTI ATGAA 1 cut(s) 1013
TspGWI ACGGA 1 cut(s) 840
TspMI CCCGGG 1 cut(s) 608
TspRI CASTG 1 cut(s) 1074
VpaK11BI GGWCC 1 cut(s) 723
VspI ATTAAT 1 cut(s) 449
XagI CCTNNNNNAGG 1 cut(s) 807
XapI RAATTY 2 cut(s) 20, 251
XceI RCATGY 1 cut(s) 389
XhoI CTCGAG 1 cut(s) 473
XmaI CCCGGG 1 cut(s) 608
XmiI GTMKAC 2 cut(s) 119, 1157
ZraI GACGTC 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.