Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0010399

Physical Location & Seq

Genomic Coordinates Forward (+)

33683000 .. 33687073

Gene Structure 4074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g36990.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGGCTTTTCTCTTCAACAAGTTTCAGGAGGCTGTAAAAGTTCTTGCGAAACATACCCCTATGCTTGCCAAGAATCCTAGGAAACTACAATTGGAGGCAGATATTAACCGCTTGTTCTTATATACCAGCTACAATCGCTTGGGAAAGGACGCTGATGAGGTAGATGTGGACGAGATTATTGACATGGCTAATAAAGCCTCTATTGATGATCAACAGAAGCAAGTCCAAGAGAACATTCATCTGCAAATTAAAAGCTTCTGCATGTCTATGGATGAACTTCTTCTCCCCGACATAAAGAACAAAAATGAGGTAACTGAGTCACCTAAACAATCAAATGCTACTGCTCAACGAAGTGGACTAAGCTTAGCTATCGGCAGGAACAGACCAGGAGATAAACATCCTGATGTGCCTGAGACAAGGCCACTAGAACTCGCTGCTGTATCTCATAAATTAAAAGATCTCATTGGCTACACTCTCGATATCAAACCTTCTCAGATACCCCATAAGGAAGCGGGCCAGGGCTTATTTATAAATGGTGAATGTGATGTTGGTGCTGTGGTGGCTGTGTACCCCGGTGTAATATACTCCCCAGCATTTTACCGTTACATTCCTGGATATCCAAGAGTTGATGCACAGAACTCGTATCTGATCACAAGGTATGATGGAACTGTGATCAATGCCAAACCATGGGGTTCTGGGGGTCAAACACGTGATTTCTGGAATGGATTAACAGTACCAGAGACCAGGTCTAATATGCAGGGGGATGAGAAAGGTTCAGATCGGCTCTTGAAGCTCCTAAGTAAGCCTTTAGATGGCAGGCAACTGGGAAAGAGTGGTGACATTATAGAGCGGAGGAACCCATTAGCTTTGGCTCATTTTGCCAATCACCCTGCAAAGGGTGTGGAGCCAAATGTAATGATTTGCCCTTATGACTTCCCATTAACTGAAAAGGAAATGAGAGTTTATATTCCAAATGTCGTGTTTGGAAATGCAGAAGAAGTGAAGATGAAGAAATTTGGGAGCTTTTGGTTGAAACTTGGGAGTTCAAGAAATAGCGGATCAGATGTTCCTGTTTTGAAGACCCTTGTTATGGTAGCTACAAGAGCTCTTTGTGATGAAGAAGTGCTTTTGAACTACAGGTTGAGCAACTCTAAGCGTCGACCAGAGTGGTATAGTCCAGTGGATGAGGAGGAAGACCGAAGAAGGTGGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

405

Amino Acids

45.58

Weight (kDa)

8.15

Isoelectric Point (pI)

45.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08270 AT5G23200
fragaria_vesca	FvH4_4g36990 FvH4_4g36990
malus_domestica	MD13G1004400.v1.1 MD16G1003200.v1.1
prunus_persica	Prupe.1G348200_v2.0.a1 Prupe.1G348200_v2.0.a1 Prupe.1G348200_v2.0.a1
pyrus_communis	pycom13g00380
rosa_chinensis	RchiOBHm_Chr4g0446781
rosa_laevigata	RLG00000005632
rosa_multiflora	Rmu_co8491361.1_g000001 Rmu_sc0001753.1_g000030
rosa_roxburghii	Rroxscaffold_5G00387100
rosa_rugosa	Rorug04G0374500
rosa_samantha	Rh4AG436000 Rh4BG444800 Rh4CG462100 Rh4DG443800
rosa_wichuraiana	Rw4G037270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	530
AccB7I	CCANNNNNTGG	1 cut(s)	687
AccBSI	CCGCTC	1 cut(s)	850
AccI	GTMKAC	1 cut(s)	1159
AciI	CCGC	4 cut(s)	109, 512, 850, 1056
AclWI	GGATC	1 cut(s)	1066
AcsI	RAATTY	1 cut(s)	1013
AcvI	CACGTG	1 cut(s)	710
AfaI	GTAC	2 cut(s)	569, 735
AfiI	CCNNNNNNNGG	5 cut(s)	687, 812, 895, 896, 1090
AflIII	ACRYGT	1 cut(s)	707
AgsI	TTSAA	6 cut(s)	16, 790, 1033, 1047, 1078, 1132
AjnI	CCWGG	4 cut(s)	385, 516, 610, 743
AjuI	GAANNNNNNNTTGG	6 cut(s)	74, 106, 219, 251, 531, 563
AloI	GAACNNNNNNTCC	4 cut(s)	267, 299, 1050, 1082
AluBI	AGCT	9 cut(s)	129, 255, 363, 368, 793, 866, 1023, 1097, 1106
AluI	AGCT	9 cut(s)	129, 255, 363, 368, 793, 866, 1023, 1097, 1106
Alw21I	GWGCWC	1 cut(s)	1108
Alw26I	GTCTC	2 cut(s)	407, 734
AlwI	GGATC	1 cut(s)	1066
AoxI	GGCC	2 cut(s)	419, 514
ApeKI	GCWGC	1 cut(s)	434
ApoI	RAATTY	1 cut(s)	1013
Asp700I	GAANNNNTTC	1 cut(s)	279
AspA2I	CCTAGG	1 cut(s)	77
AspS9I	GGNCC	1 cut(s)	514
AsuC2I	CCSGG	1 cut(s)	573
AsuHPI	GGTGA	4 cut(s)	312, 548, 848, 878
AvrII	CCTAGG	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	1108
BbrPI	CACGTG	1 cut(s)	710
BbsI	GAAGAC	2 cut(s)	1085, 1200
Bbv12I	GWGCWC	1 cut(s)	1108
BbvI	GCAGC	1 cut(s)	421
BccI	CCATC	2 cut(s)	656, 806
BcgI	CGANNNNNNTGC	2 cut(s)	621, 655
BciT130I	CCWGG	4 cut(s)	387, 518, 612, 745
BclI	TGATCA	3 cut(s)	208, 648, 672
BcnI	CCSGG	1 cut(s)	573
BcoDI	GTCTC	2 cut(s)	407, 734
BfaI	CTAG	2 cut(s)	78, 425
BfmI	CTRYAG	1 cut(s)	1135
BglII	AGATCT	1 cut(s)	457
BisI	GCNGC	1 cut(s)	435
BlnI	CCTAGG	1 cut(s)	77
BlpI	GCTNAGC	1 cut(s)	364
BlsI	GCNGC	1 cut(s)	436
Bme1390I	CCNGG	5 cut(s)	387, 518, 573, 612, 745
BmgT120I	GGNCC	1 cut(s)	514
BmiI	GGNNCC	2 cut(s)	857, 906
BmrFI	CCNGG	5 cut(s)	387, 518, 573, 612, 745
BmrI	ACTGGG	1 cut(s)	833
BmsI	GCATC	1 cut(s)	619
BmuI	ACTGGG	1 cut(s)	833
BpiI	GAAGAC	2 cut(s)	1085, 1200
Bpu1102I	GCTNAGC	1 cut(s)	364
BpuMI	CCSGG	1 cut(s)	573
BsaAI	YACGTR	1 cut(s)	710
BsaBI	GATNNNNATC	1 cut(s)	396
BsaI	GGTCTC	1 cut(s)	734
BsaJI	CCNNGG	4 cut(s)	77, 517, 571, 686
BsaXI	ACNNNNNCTCC	2 cut(s)	267, 297
Bsc4I	CCNNNNNNNGG	5 cut(s)	687, 812, 895, 896, 1090
Bse1I	ACTGG	2 cut(s)	828, 1178
Bse8I	GATNNNNATC	1 cut(s)	396
BseBI	CCWGG	4 cut(s)	387, 518, 612, 745
BseDI	CCNNGG	4 cut(s)	77, 517, 571, 686
BseGI	GGATG	4 cut(s)	277, 397, 769, 1189
BseJI	GATNNNNATC	1 cut(s)	396
BseLI	CCNNNNNNNGG	5 cut(s)	687, 812, 895, 896, 1090
BseMII	CTCAG	3 cut(s)	306, 402, 506
BseNI	ACTGG	2 cut(s)	828, 1178
BseRI	GAGGAG	1 cut(s)	1202
BseXI	GCAGC	1 cut(s)	421
BseYI	CCCAGC	1 cut(s)	589
BshFI	GGCC	2 cut(s)	421, 516
BsiHKAI	GWGCWC	1 cut(s)	1108
BsiSI	CCGG	1 cut(s)	573
BslI	CCNNNNNNNGG	5 cut(s)	687, 812, 895, 896, 1090
BsmAI	GTCTC	2 cut(s)	407, 734
BsnI	GGCC	2 cut(s)	421, 516
Bso31I	GGTCTC	1 cut(s)	734
Bsp1286I	GDGCHC	1 cut(s)	1108
Bsp143I	GATC	6 cut(s)	208, 457, 648, 672, 778, 1058
Bsp1720I	GCTNAGC	1 cut(s)	364
Bsp19I	CCATGG	1 cut(s)	686
BspACI	CCGC	4 cut(s)	109, 512, 850, 1056
BspANI	GGCC	2 cut(s)	421, 516
BspCNI	CTCAG	3 cut(s)	307, 403, 505
BspLI	GGNNCC	2 cut(s)	857, 906
BspPI	GGATC	1 cut(s)	1066
BspTNI	GGTCTC	1 cut(s)	734
BsrBI	CCGCTC	1 cut(s)	850
BsrI	ACTGG	2 cut(s)	828, 1178
BssECI	CCNNGG	4 cut(s)	77, 517, 571, 686
BssMI	GATC	6 cut(s)	208, 457, 648, 672, 778, 1058
BssT1I	CCWWGG	2 cut(s)	77, 686
Bst2UI	CCWGG	4 cut(s)	387, 518, 612, 745
Bst4CI	ACNGT	3 cut(s)	602, 670, 733
Bst6I	CTCTTC	1 cut(s)	17
BstBAI	YACGTR	1 cut(s)	710
BstC8I	GCNNGC	3 cut(s)	66, 514, 818
BstDEI	CTNAG	7 cut(s)	315, 359, 364, 411, 492, 797, 1152
BstDSI	CCRYGG	1 cut(s)	686
BstF5I	GGATG	4 cut(s)	277, 397, 769, 1189
BstKTI	GATC	6 cut(s)	211, 460, 651, 675, 781, 1061
BstMAI	GTCTC	2 cut(s)	407, 734
BstMBI	GATC	6 cut(s)	208, 457, 648, 672, 778, 1058
BstMWI	GCNNNNNNNGC	6 cut(s)	135, 194, 560, 790, 878, 1103
BstNI	CCWGG	4 cut(s)	387, 518, 612, 745
BstNSI	RCATGY	1 cut(s)	265
BstSCI	CCNGG	5 cut(s)	385, 516, 571, 610, 743
BstSFI	CTRYAG	1 cut(s)	1135
BstV1I	GCAGC	1 cut(s)	421
BstV2I	GAAGAC	2 cut(s)	1085, 1200
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
BsuRI	GGCC	2 cut(s)	421, 516
BtgI	CCRYGG	1 cut(s)	686
BtsCI	GGATG	4 cut(s)	277, 397, 769, 1189
BtsIMutI	CAGTG	1 cut(s)	1185
Cac8I	GCNNGC	3 cut(s)	66, 514, 818
Cfr13I	GGNCC	1 cut(s)	514
CseI	GACGC	2 cut(s)	158, 1145
CsiI	ACCWGGT	1 cut(s)	743
Csp6I	GTAC	2 cut(s)	568, 734
CspCI	CAANNNNNGTGG	2 cut(s)	882, 917
CviAII	CATG	3 cut(s)	184, 262, 687
CviQI	GTAC	2 cut(s)	568, 734
DdeI	CTNAG	7 cut(s)	315, 359, 364, 411, 492, 797, 1152
DpnI	GATC	6 cut(s)	210, 459, 650, 674, 780, 1060
DpnII	GATC	6 cut(s)	208, 457, 648, 672, 778, 1058
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Ecl136II	GAGCTC	1 cut(s)	1106
Eco130I	CCWWGG	2 cut(s)	77, 686
Eco24I	GRGCYC	1 cut(s)	1108
Eco31I	GGTCTC	1 cut(s)	734
Eco32I	GATATC	2 cut(s)	481, 617
Eco53kI	GAGCTC	1 cut(s)	1106
Eco72I	CACGTG	1 cut(s)	710
EcoICRI	GAGCTC	1 cut(s)	1106
EcoRII	CCWGG	4 cut(s)	385, 516, 610, 743
EcoRV	GATATC	2 cut(s)	481, 617
EcoT14I	CCWWGG	2 cut(s)	77, 686
EcoT38I	GRGCYC	1 cut(s)	1108
ErhI	CCWWGG	2 cut(s)	77, 686
FaeI	CATG	3 cut(s)	187, 265, 690
FalI	AAGNNNNNCTT	4 cut(s)	790, 822, 1110, 1142
FatI	CATG	3 cut(s)	183, 261, 686
FauI	CCCGC	1 cut(s)	505
FbaI	TGATCA	3 cut(s)	208, 648, 672
FblI	GTMKAC	1 cut(s)	1159
Fnu4HI	GCNGC	1 cut(s)	435
FokI	GGATG	4 cut(s)	284, 384, 776, 1196
FriOI	GRGCYC	1 cut(s)	1108
Fsp4HI	GCNGC	1 cut(s)	435
FspBI	CTAG	2 cut(s)	78, 425
GluI	GCNGC	1 cut(s)	435
GsaI	CCCAGC	1 cut(s)	593
HaeIII	GGCC	2 cut(s)	421, 516
HapII	CCGG	1 cut(s)	573
HgaI	GACGC	2 cut(s)	158, 1145
Hin1II	CATG	3 cut(s)	187, 265, 690
HincII	GTYRAC	1 cut(s)	1160
HindII	GTYRAC	1 cut(s)	1160
HindIII	AAGCTT	2 cut(s)	253, 361
HinfI	GANTC	2 cut(s)	73, 317
HpaII	CCGG	1 cut(s)	573
HphI	GGTGA	4 cut(s)	312, 548, 848, 878
Hpy166II	GTNNAC	4 cut(s)	169, 356, 568, 1160
Hpy188I	TCNGA	4 cut(s)	495, 648, 778, 1063
Hpy188III	TCNNGA	6 cut(s)	26, 401, 476, 718, 787, 1047
Hpy8I	GTNNAC	4 cut(s)	169, 356, 568, 1160
Hpy99I	CGWCG	1 cut(s)	1161
HpyAV	CCTTC	2 cut(s)	498, 1197
HpyCH4III	ACNGT	3 cut(s)	602, 670, 733
HpyCH4IV	ACGT	1 cut(s)	709
HpyCH4V	TGCA	6 cut(s)	244, 261, 632, 757, 893, 992
HpyF10VI	GCNNNNNNNGC	6 cut(s)	135, 194, 560, 790, 878, 1103
HpyF3I	CTNAG	7 cut(s)	315, 359, 364, 411, 492, 797, 1152
HpySE526I	ACGT	1 cut(s)	709
Hsp92II	CATG	3 cut(s)	187, 265, 690
Ksp22I	TGATCA	3 cut(s)	208, 648, 672
Kzo9I	GATC	6 cut(s)	208, 457, 648, 672, 778, 1058
LmnI	GCTCC	3 cut(s)	798, 904, 1020
Lsp1109I	GCAGC	1 cut(s)	421
LweI	GCATC	1 cut(s)	619
MabI	ACCWGGT	1 cut(s)	743
MaeI	CTAG	2 cut(s)	78, 425
MaeII	ACGT	1 cut(s)	709
MaeIII	GTNAC	4 cut(s)	310, 318, 602, 836
MalI	GATC	6 cut(s)	210, 459, 650, 674, 780, 1060
MbiI	CCGCTC	1 cut(s)	850
MboI	GATC	6 cut(s)	208, 457, 648, 672, 778, 1058
MboII	GAAGA	9 cut(s)	4, 272, 1007, 1015, 1021, 1090, 1130, 1205, 1212
MfeI	CAATTG	1 cut(s)	89
MflI	RGATCY	1 cut(s)	457
MhlI	GDGCHC	1 cut(s)	1108
MluCI	AATT	4 cut(s)	89, 246, 449, 1013
MlyI	GAGTC	1 cut(s)	326
MnlI	CCTC	8 cut(s)	22, 88, 151, 208, 301, 846, 1180, 1183
MroXI	GAANNNNTTC	1 cut(s)	279
MseI	TTAA	5 cut(s)	105, 249, 452, 728, 941
MslI	CAYNNNNRTG	2 cut(s)	266, 402
MspI	CCGG	1 cut(s)	573
MspR9I	CCNGG	5 cut(s)	387, 518, 573, 612, 745
MunI	CAATTG	1 cut(s)	89
MvaI	CCWGG	4 cut(s)	387, 518, 612, 745
MwoI	GCNNNNNNNGC	6 cut(s)	135, 194, 560, 790, 878, 1103
NciI	CCSGG	1 cut(s)	573
NcoI	CCATGG	1 cut(s)	686
NdeII	GATC	6 cut(s)	208, 457, 648, 672, 778, 1058
NlaIII	CATG	3 cut(s)	187, 265, 690
NlaIV	GGNNCC	2 cut(s)	857, 906
NmuCI	GTSAC	2 cut(s)	318, 836
NspI	RCATGY	1 cut(s)	265
PdmI	GAANNNNTTC	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	73
PflFI	GACNNNGTC	1 cut(s)	745
PflMI	CCANNNNNTGG	1 cut(s)	687
PfoI	TCCNGGA	1 cut(s)	610
PkrI	GCNGC	1 cut(s)	436
PleI	GAGTC	1 cut(s)	325
PmaCI	CACGTG	1 cut(s)	710
PmlI	CACGTG	1 cut(s)	710
PpsI	GAGTC	1 cut(s)	325
Ppu21I	YACGTR	1 cut(s)	710
PsiI	TTATAA	1 cut(s)	530
Psp124BI	GAGCTC	1 cut(s)	1108
Psp6I	CCWGG	4 cut(s)	385, 516, 610, 743
PspCI	CACGTG	1 cut(s)	710
PspFI	CCCAGC	1 cut(s)	589
PspGI	CCWGG	4 cut(s)	385, 516, 610, 743
PspN4I	GGNNCC	2 cut(s)	857, 906
PspPI	GGNCC	1 cut(s)	514
PsuI	RGATCY	1 cut(s)	457
PsyI	GACNNNGTC	1 cut(s)	745
RsaI	GTAC	2 cut(s)	569, 735
RsaNI	GTAC	2 cut(s)	568, 734
RseI	CAYNNNNRTG	2 cut(s)	266, 402
SacI	GAGCTC	1 cut(s)	1108
SalI	GTCGAC	1 cut(s)	1158
SaqAI	TTAA	5 cut(s)	105, 249, 452, 728, 941
SatI	GCNGC	1 cut(s)	435
Sau3AI	GATC	6 cut(s)	208, 457, 648, 672, 778, 1058
Sau96I	GGNCC	1 cut(s)	514
SchI	GAGTC	1 cut(s)	326
ScrFI	CCNGG	5 cut(s)	387, 518, 573, 612, 745
SduI	GDGCHC	1 cut(s)	1108
SexAI	ACCWGGT	1 cut(s)	743
SfaNI	GCATC	1 cut(s)	619
SfcI	CTRYAG	1 cut(s)	1135
SmiMI	CAYNNNNRTG	2 cut(s)	266, 402
Sse9I	AATT	4 cut(s)	89, 246, 449, 1013
SsiI	CCGC	4 cut(s)	109, 512, 850, 1056
SspMI	CTAG	2 cut(s)	78, 425
SstI	GAGCTC	1 cut(s)	1108
StyD4I	CCNGG	5 cut(s)	385, 516, 571, 610, 743
StyI	CCWWGG	2 cut(s)	77, 686
TaaI	ACNGT	3 cut(s)	602, 670, 733
TaiI	ACGT	1 cut(s)	712
TaqI	TCGA	2 cut(s)	477, 1159
TaqII	GACCGA	1 cut(s)	1212
TasI	AATT	4 cut(s)	89, 246, 449, 1013
TfiI	GAWTC	1 cut(s)	73
Tru1I	TTAA	5 cut(s)	105, 249, 452, 728, 941
Tru9I	TTAA	5 cut(s)	105, 249, 452, 728, 941
TscAI	CASTG	1 cut(s)	1185
TseFI	GTSAC	2 cut(s)	318, 836
TseI	GCWGC	1 cut(s)	434
Tsp45I	GTSAC	2 cut(s)	318, 836
TspDTI	ATGAA	4 cut(s)	227, 288, 1022, 1131
TspRI	CASTG	1 cut(s)	1185
Tth111I	GACNNNGTC	1 cut(s)	745
Van91I	CCANNNNNTGG	1 cut(s)	687
XapI	RAATTY	1 cut(s)	1013
XceI	RCATGY	1 cut(s)	265
XmaJI	CCTAGG	1 cut(s)	77
XmiI	GTMKAC	1 cut(s)	1159
XmnI	GAANNNNTTC	1 cut(s)	279
XspI	CTAG	2 cut(s)	78, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.