Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0010399

Physical Location & Seq

Genomic Coordinates Forward (+)

72941290 .. 72945162

Gene Structure 3873 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG436000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGCTTGTTTGTCTTGTGTGCCCTTCCCGACACGCTATTGTTTCTGATCATTTTACCTTCCAGGCTGTCAAAGTTCTTGCGAAAAATTCCCCTATGCTTGCCAAGAATCCTAGGAAACTACAATTTGAGGCAGATATTAACCGCCTTTTCCTATATACCAGCTACAATCGCTTGGGAAAGGACGCTGATGAGGCAGATGTGGACGAGATTATTGACATGGCTAATAGAGCCTCTGTTGATGATCAACAGAAACAAGTCCAAGAAAACATTCATCTTCAAATTAAAAGCTTCTGCATGTCTATGGATGAACTTCTTCTACCTGATGTAAAGAGCACAAATGAGGTCACTGAATCACCTAAACAATCAAATGCTACTCCTCAACGAAGTGGACTTAGTTTAGCTATTGGCAGGAACAGACCAGGAGATAAACATCCTGATGTGCCTGAGACAAGGCCATTAGAACGCGCTGATGTATCTCAAAAATTGAAAGATCTCATTGGCTACACTCTCGATATCAAACCTTCTCATATACCCCATAAGGAAGCAGGCCAAGGTTTATTTTTAAATGGTGAATGTGATGTTGGTGCTGTGGTGGCTGTGTACCCTGGTGTAATATACTCCCCAGCATATTACCGTTACATTCCTGGATATCCAAGAGTTGATGCACATAACTCATATCTGATCACAAGGTATGATGGAACTGTGATCAATGCCAAACCTTGGGGTTCTGGGGGTGAAACACGTGATTTCTGGGATGGGTTAACAGTACCAGAGATCAGACCTAATATGCAAGGAGATGAGAAAGGTTCAGATCGGCTCTTGAAGCTCCTAAGTAAGCCCTTGGATGGCAGGCGACTGGGAAAGAGTGGCGACATTATAGAGCGGAGGAACCCTTTAGCTTTGGCTCATTTTGCCAACCACCCTGCAAAGGGTGTGGAGCCGAATGTAATGATTTGCCCTTATGACTTCCCATTAACCGAAAAGGAAATGAGAGTTTATATTCCGAATGTAGTTTTTGGAAATGCAGAAGAAGTGAAGATGAAGAAATTTGGGAGCTTTTGGTTGAAACTTGGGAGTTCAAGAAATAGCGGATCAGATGTTCCTGTTTTGAAGACCCTTGTTATGGTAGCTACAAGGGCACTTTGTGATGAAGAAGTGCTTTTGAACTACAGGTTGAGCAACTCTAAGCGTCGGCCAGAGTGGTATAGTCCAGTCAATGAGGAGGAAGACCGAAGAAGGTGGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

415

Amino Acids

46.81

Weight (kDa)

7.62

Isoelectric Point (pI)

46.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08270 AT5G23200
fragaria_vesca	FvH4_4g36990 FvH4_4g36990
malus_domestica	MD13G1004400.v1.1 MD16G1003200.v1.1
prunus_persica	Prupe.1G348200_v2.0.a1 Prupe.1G348200_v2.0.a1 Prupe.1G348200_v2.0.a1
pyrus_communis	pycom13g00380
rosa_chinensis	RchiOBHm_Chr4g0446781
rosa_laevigata	RLG00000005632
rosa_multiflora	Rmu_co8491361.1_g000001 Rmu_sc0001753.1_g000030
rosa_roxburghii	Rroxscaffold_5G00387100
rosa_rugosa	Rorug04G0374500
rosa_samantha	Rh4AG436000 Rh4BG444800 Rh4CG462100 Rh4DG443800
rosa_wichuraiana	Rw4G037270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	720
AccBSI	CCGCTC	1 cut(s)	883
AccII	CGCG	1 cut(s)	465
AciI	CCGC	3 cut(s)	142, 883, 1089
AclWI	GGATC	1 cut(s)	1099
AcoI	YGGCCR	1 cut(s)	1193
AcsI	RAATTY	2 cut(s)	85, 1046
AcvI	CACGTG	1 cut(s)	743
AdeI	CACNNNGTG	1 cut(s)	1145
AfaI	GTAC	2 cut(s)	602, 768
AfiI	CCNNNNNNNGG	5 cut(s)	720, 845, 928, 929, 1123
AflIII	ACRYGT	1 cut(s)	740
AgsI	TTSAA	7 cut(s)	278, 487, 823, 1066, 1080, 1111, 1165
AjnI	CCWGG	4 cut(s)	60, 418, 604, 643
AjuI	GAANNNNNNNTTGG	4 cut(s)	252, 284, 564, 596
AloI	GAACNNNNNNTCC	2 cut(s)	1083, 1115
AluBI	AGCT	8 cut(s)	162, 288, 401, 826, 899, 1056, 1130, 1245
AluI	AGCT	8 cut(s)	162, 288, 401, 826, 899, 1056, 1130, 1245
Alw21I	GWGCWC	1 cut(s)	335
Alw26I	GTCTC	1 cut(s)	440
AlwI	GGATC	1 cut(s)	1099
AoxI	GGCC	3 cut(s)	452, 547, 1193
ApoI	RAATTY	2 cut(s)	85, 1046
Asp700I	GAANNNNTTC	2 cut(s)	267, 312
AspA2I	CCTAGG	1 cut(s)	110
AspLEI	GCGC	1 cut(s)	467
AsuHPI	GGTGA	3 cut(s)	345, 581, 746
AvrII	CCTAGG	1 cut(s)	110
BaeGI	GKGCMC	2 cut(s)	23, 1141
BbrPI	CACGTG	1 cut(s)	743
BbsI	GAAGAC	2 cut(s)	1118, 1233
Bbv12I	GWGCWC	1 cut(s)	335
BccI	CCATC	3 cut(s)	689, 749, 839
BciT130I	CCWGG	4 cut(s)	62, 420, 606, 645
BclI	TGATCA	4 cut(s)	46, 241, 681, 705
BcoDI	GTCTC	1 cut(s)	440
BfaI	CTAG	1 cut(s)	111
BfmI	CTRYAG	1 cut(s)	1168
BglII	AGATCT	1 cut(s)	490
BlnI	CCTAGG	1 cut(s)	110
Bme1390I	CCNGG	4 cut(s)	62, 420, 606, 645
BmiI	GGNNCC	2 cut(s)	890, 939
BmrFI	CCNGG	4 cut(s)	62, 420, 606, 645
BmrI	ACTGGG	1 cut(s)	866
BmsI	GCATC	1 cut(s)	652
BmuI	ACTGGG	1 cut(s)	866
BpiI	GAAGAC	2 cut(s)	1118, 1233
BsaAI	YACGTR	1 cut(s)	743
BsaBI	GATNNNNATC	1 cut(s)	429
BsaJI	CCNNGG	5 cut(s)	110, 550, 604, 719, 840
Bsc4I	CCNNNNNNNGG	5 cut(s)	720, 845, 928, 929, 1123
Bse1I	ACTGG	2 cut(s)	861, 1211
Bse8I	GATNNNNATC	1 cut(s)	429
BseBI	CCWGG	4 cut(s)	62, 420, 606, 645
BseDI	CCNNGG	5 cut(s)	110, 550, 604, 719, 840
BseGI	GGATG	4 cut(s)	310, 430, 760, 850
BseJI	GATNNNNATC	1 cut(s)	429
BseLI	CCNNNNNNNGG	5 cut(s)	720, 845, 928, 929, 1123
BseMII	CTCAG	1 cut(s)	435
BseNI	ACTGG	2 cut(s)	861, 1211
BseRI	GAGGAG	2 cut(s)	366, 1235
BseSI	GKGCMC	2 cut(s)	23, 1141
BseYI	CCCAGC	1 cut(s)	622
Bsh1236I	CGCG	1 cut(s)	465
BshFI	GGCC	3 cut(s)	454, 549, 1195
BsiHKAI	GWGCWC	1 cut(s)	335
BslI	CCNNNNNNNGG	5 cut(s)	720, 845, 928, 929, 1123
BsmAI	GTCTC	1 cut(s)	440
BsnI	GGCC	3 cut(s)	454, 549, 1195
Bsp1286I	GDGCHC	3 cut(s)	23, 335, 1141
Bsp143I	GATC	8 cut(s)	46, 241, 490, 681, 705, 774, 811, 1091
BspACI	CCGC	3 cut(s)	142, 883, 1089
BspANI	GGCC	3 cut(s)	454, 549, 1195
BspCNI	CTCAG	1 cut(s)	436
BspFNI	CGCG	1 cut(s)	465
BspLI	GGNNCC	2 cut(s)	890, 939
BspPI	GGATC	1 cut(s)	1099
BsrBI	CCGCTC	1 cut(s)	883
BsrI	ACTGG	2 cut(s)	861, 1211
BssECI	CCNNGG	5 cut(s)	110, 550, 604, 719, 840
BssMI	GATC	8 cut(s)	46, 241, 490, 681, 705, 774, 811, 1091
BssT1I	CCWWGG	4 cut(s)	110, 550, 719, 840
Bst2UI	CCWGG	4 cut(s)	62, 420, 606, 645
Bst4CI	ACNGT	3 cut(s)	635, 703, 766
BstBAI	YACGTR	1 cut(s)	743
BstC8I	GCNNGC	3 cut(s)	99, 547, 851
BstDEI	CTNAG	4 cut(s)	392, 444, 830, 1185
BstF5I	GGATG	4 cut(s)	310, 430, 760, 850
BstFNI	CGCG	1 cut(s)	465
BstHHI	GCGC	1 cut(s)	467
BstKTI	GATC	8 cut(s)	49, 244, 493, 684, 708, 777, 814, 1094
BstMAI	GTCTC	1 cut(s)	440
BstMBI	GATC	8 cut(s)	46, 241, 490, 681, 705, 774, 811, 1091
BstMWI	GCNNNNNNNGC	7 cut(s)	168, 191, 227, 593, 823, 911, 1136
BstNI	CCWGG	4 cut(s)	62, 420, 606, 645
BstNSI	RCATGY	1 cut(s)	298
BstSCI	CCNGG	4 cut(s)	60, 418, 604, 643
BstSFI	CTRYAG	1 cut(s)	1168
BstSLI	GKGCMC	2 cut(s)	23, 1141
BstUI	CGCG	1 cut(s)	465
BstV2I	GAAGAC	2 cut(s)	1118, 1233
BstX2I	RGATCY	1 cut(s)	490
BstYI	RGATCY	1 cut(s)	490
BsuRI	GGCC	3 cut(s)	454, 549, 1195
BtsCI	GGATG	4 cut(s)	310, 430, 760, 850
BtsIMutI	CAGTG	1 cut(s)	345
Cac8I	GCNNGC	3 cut(s)	99, 547, 851
CfoI	GCGC	1 cut(s)	467
CseI	GACGC	2 cut(s)	191, 1178
Csp6I	GTAC	2 cut(s)	601, 767
CspCI	CAANNNNNGTGG	2 cut(s)	915, 950
CviAII	CATG	2 cut(s)	217, 295
CviQI	GTAC	2 cut(s)	601, 767
DdeI	CTNAG	4 cut(s)	392, 444, 830, 1185
DpnI	GATC	8 cut(s)	48, 243, 492, 683, 707, 776, 813, 1093
DpnII	GATC	8 cut(s)	46, 241, 490, 681, 705, 774, 811, 1091
DraI	TTTAAA	1 cut(s)	564
DraIII	CACNNNGTG	1 cut(s)	1145
EaeI	YGGCCR	1 cut(s)	1193
Eco130I	CCWWGG	4 cut(s)	110, 550, 719, 840
Eco32I	GATATC	2 cut(s)	514, 650
Eco72I	CACGTG	1 cut(s)	743
EcoRII	CCWGG	4 cut(s)	60, 418, 604, 643
EcoRV	GATATC	2 cut(s)	514, 650
EcoT14I	CCWWGG	4 cut(s)	110, 550, 719, 840
ErhI	CCWWGG	4 cut(s)	110, 550, 719, 840
FaeI	CATG	2 cut(s)	220, 298
FalI	AAGNNNNNCTT	2 cut(s)	1143, 1175
FatI	CATG	2 cut(s)	216, 294
FbaI	TGATCA	4 cut(s)	46, 241, 681, 705
FokI	GGATG	4 cut(s)	317, 417, 767, 857
FspBI	CTAG	1 cut(s)	111
GlaI	GCGC	1 cut(s)	466
GsaI	CCCAGC	1 cut(s)	626
HaeIII	GGCC	3 cut(s)	454, 549, 1195
HgaI	GACGC	2 cut(s)	191, 1178
HhaI	GCGC	1 cut(s)	467
Hin1II	CATG	2 cut(s)	220, 298
Hin6I	GCGC	1 cut(s)	465
HinP1I	GCGC	1 cut(s)	465
HincII	GTYRAC	1 cut(s)	762
HindII	GTYRAC	1 cut(s)	762
HindIII	AAGCTT	1 cut(s)	286
HinfI	GANTC	2 cut(s)	106, 350
HpaI	GTTAAC	1 cut(s)	762
HphI	GGTGA	3 cut(s)	345, 581, 746
Hpy166II	GTNNAC	4 cut(s)	202, 389, 601, 762
Hpy188I	TCNGA	6 cut(s)	46, 681, 779, 811, 1005, 1096
Hpy188III	TCNNGA	5 cut(s)	27, 434, 509, 820, 1080
Hpy8I	GTNNAC	4 cut(s)	202, 389, 601, 762
Hpy99I	CGWCG	1 cut(s)	1194
HpyAV	CCTTC	4 cut(s)	33, 67, 531, 1230
HpyCH4III	ACNGT	3 cut(s)	635, 703, 766
HpyCH4IV	ACGT	1 cut(s)	742
HpyCH4V	TGCA	5 cut(s)	294, 665, 790, 926, 1025
HpyF10VI	GCNNNNNNNGC	7 cut(s)	168, 191, 227, 593, 823, 911, 1136
HpyF3I	CTNAG	4 cut(s)	392, 444, 830, 1185
HpySE526I	ACGT	1 cut(s)	742
Hsp92II	CATG	2 cut(s)	220, 298
HspAI	GCGC	1 cut(s)	465
Ksp22I	TGATCA	4 cut(s)	46, 241, 681, 705
KspAI	GTTAAC	1 cut(s)	762
Kzo9I	GATC	8 cut(s)	46, 241, 490, 681, 705, 774, 811, 1091
LmnI	GCTCC	4 cut(s)	831, 937, 1053, 1242
LweI	GCATC	1 cut(s)	652
MaeI	CTAG	1 cut(s)	111
MaeII	ACGT	1 cut(s)	742
MaeIII	GTNAC	2 cut(s)	343, 635
MalI	GATC	8 cut(s)	48, 243, 492, 683, 707, 776, 813, 1093
MbiI	CCGCTC	1 cut(s)	883
MboI	GATC	8 cut(s)	46, 241, 490, 681, 705, 774, 811, 1091
MboII	GAAGA	9 cut(s)	266, 305, 1040, 1048, 1054, 1123, 1163, 1238, 1245
MflI	RGATCY	1 cut(s)	490
MhlI	GDGCHC	3 cut(s)	23, 335, 1141
MluCI	AATT	5 cut(s)	85, 122, 279, 482, 1046
MnlI	CCTC	8 cut(s)	121, 184, 241, 334, 387, 879, 1213, 1216
MroXI	GAANNNNTTC	2 cut(s)	267, 312
MseI	TTAA	5 cut(s)	138, 282, 563, 761, 974
MslI	CAYNNNNRTG	2 cut(s)	299, 435
MspR9I	CCNGG	4 cut(s)	62, 420, 606, 645
MvaI	CCWGG	4 cut(s)	62, 420, 606, 645
MvnI	CGCG	1 cut(s)	465
MwoI	GCNNNNNNNGC	7 cut(s)	168, 191, 227, 593, 823, 911, 1136
NdeII	GATC	8 cut(s)	46, 241, 490, 681, 705, 774, 811, 1091
NlaIII	CATG	2 cut(s)	220, 298
NlaIV	GGNNCC	2 cut(s)	890, 939
NmuCI	GTSAC	1 cut(s)	343
NspI	RCATGY	1 cut(s)	298
PdmI	GAANNNNTTC	2 cut(s)	267, 312
PfeI	GAWTC	2 cut(s)	106, 350
PflMI	CCANNNNNTGG	1 cut(s)	720
PfoI	TCCNGGA	1 cut(s)	643
PmaCI	CACGTG	1 cut(s)	743
PmlI	CACGTG	1 cut(s)	743
Ppu21I	YACGTR	1 cut(s)	743
Psp6I	CCWGG	4 cut(s)	60, 418, 604, 643
PspCI	CACGTG	1 cut(s)	743
PspFI	CCCAGC	1 cut(s)	622
PspGI	CCWGG	4 cut(s)	60, 418, 604, 643
PspN4I	GGNNCC	2 cut(s)	890, 939
PsrI	GAACNNNNNNTAC	2 cut(s)	300, 332
PsuI	RGATCY	1 cut(s)	490
RsaI	GTAC	2 cut(s)	602, 768
RsaNI	GTAC	2 cut(s)	601, 767
RseI	CAYNNNNRTG	2 cut(s)	299, 435
SaqAI	TTAA	5 cut(s)	138, 282, 563, 761, 974
Sau3AI	GATC	8 cut(s)	46, 241, 490, 681, 705, 774, 811, 1091
ScrFI	CCNGG	4 cut(s)	62, 420, 606, 645
SduI	GDGCHC	3 cut(s)	23, 335, 1141
SfaNI	GCATC	1 cut(s)	652
SfcI	CTRYAG	1 cut(s)	1168
SmiMI	CAYNNNNRTG	2 cut(s)	299, 435
Sse9I	AATT	5 cut(s)	85, 122, 279, 482, 1046
SsiI	CCGC	3 cut(s)	142, 883, 1089
SspMI	CTAG	1 cut(s)	111
StyD4I	CCNGG	4 cut(s)	60, 418, 604, 643
StyI	CCWWGG	4 cut(s)	110, 550, 719, 840
TaaI	ACNGT	3 cut(s)	635, 703, 766
TaiI	ACGT	1 cut(s)	745
TaqI	TCGA	1 cut(s)	510
TaqII	GACCGA	1 cut(s)	1245
TasI	AATT	5 cut(s)	85, 122, 279, 482, 1046
TfiI	GAWTC	2 cut(s)	106, 350
Tru1I	TTAA	5 cut(s)	138, 282, 563, 761, 974
Tru9I	TTAA	5 cut(s)	138, 282, 563, 761, 974
TscAI	CASTG	1 cut(s)	352
TseFI	GTSAC	1 cut(s)	343
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	4 cut(s)	260, 321, 1055, 1164
TspRI	CASTG	1 cut(s)	352
Van91I	CCANNNNNTGG	1 cut(s)	720
XapI	RAATTY	2 cut(s)	85, 1046
XceI	RCATGY	1 cut(s)	298
XmaJI	CCTAGG	1 cut(s)	110
XmnI	GAANNNNTTC	2 cut(s)	267, 312
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.