Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0010399

Physical Location & Seq

Genomic Coordinates Forward (+)

64466079 .. 64469935

Gene Structure 3857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG443800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGCTAATAGAGCCTCTGTTGATGATCAACAGAAACAAGTCCAAGAAAACATTCATCTTCAAATTAAAAGCTTCTGCATGTCTATGGATGAACTTCTTCTACCTGATGTAAAGAGCACAAATGAGGTCACTGAATCACCTAAACAATCAAATGCTACTCCTCAACGAAGTGGACTTAGTTTAGCTATTGGCAGGAACAGACCAGGAGATAAACATCCTGATGTGCCTGAGACAAGGCCATTAGAACGCGCTGATGTATCTCAAAAATTGAAAGATCTCATTGGCTACACTCTCGATATCAAACCTTCTCAGATACCCCATAAGGAAGCAGGCCAAGGTTTATTTTTAAATGGTGAATGTGATGTTGGTGCTGTGGTGGCTGTGTACCCTGGTGTAATATACTCCCCAGCATATTACCGTTACATTCCTGGATATCCAAGAGTTGATGCACAGAACTCATATCTGATCACAAGGTATGATGGAACTGTGATCAATGCCAAACCTTGGGGTTCTGGGGGTGAAACACGTGATTTCTGGGATGGGTTAACAGTACCAGAGATCAGACCTAATATGCAAGGAGATGAGAAAGGTTCAGATCGGCTCTTGAAGCTCCTAAGTAAGCCCTTGGATGGCAGGCGACTGGGAAAGAGTGGCGACATTATAGAGCGGAGGAACCCTTTAGCTTTGGCTCATTTTGCCAACCACCCTGCAAAGGGTGTGGAGCCGAATGTAATGATTTGCCCTTATGACTTCCCATTAACCGAAAAGGAAATGAGAGTTTATATTCCGAATGTAGTTTTTGGAAACGCAGAAGAAGTGAAGATGAAGAAATTTGGGAGCTTTTGGTTGAAACTTGGGAGTTCAAGAAATAGCGGATCAGATGTTCCTGTTTTGAAGACCCTTGTTATGGTAGCTACAAGGGCACTTTGTGATGAAGAAGTGCTTTTGAACTACAGGTTGAGCAACTCTAAGCGTCGGCCAGAGTGGTATAGTCCAGTCAATGAGGAGGAAGACCGAAGAAGGTGGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

343

Amino Acids

38.62

Weight (kDa)

8.2

Isoelectric Point (pI)

50.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08270 AT5G23200
fragaria_vesca	FvH4_4g36990 FvH4_4g36990
malus_domestica	MD13G1004400.v1.1 MD16G1003200.v1.1
prunus_persica	Prupe.1G348200_v2.0.a1 Prupe.1G348200_v2.0.a1 Prupe.1G348200_v2.0.a1
pyrus_communis	pycom13g00380
rosa_chinensis	RchiOBHm_Chr4g0446781
rosa_laevigata	RLG00000005632
rosa_multiflora	Rmu_co8491361.1_g000001 Rmu_sc0001753.1_g000030
rosa_roxburghii	Rroxscaffold_5G00387100
rosa_rugosa	Rorug04G0374500
rosa_samantha	Rh4AG436000 Rh4BG444800 Rh4CG462100 Rh4DG443800
rosa_wichuraiana	Rw4G037270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	504
AccBSI	CCGCTC	1 cut(s)	667
AccII	CGCG	1 cut(s)	249
AciI	CCGC	2 cut(s)	667, 873
AclWI	GGATC	1 cut(s)	883
AcoI	YGGCCR	1 cut(s)	977
AcsI	RAATTY	1 cut(s)	830
AcvI	CACGTG	1 cut(s)	527
AdeI	CACNNNGTG	1 cut(s)	929
AfaI	GTAC	2 cut(s)	386, 552
AfiI	CCNNNNNNNGG	5 cut(s)	504, 629, 712, 713, 907
AflIII	ACRYGT	1 cut(s)	524
AgsI	TTSAA	7 cut(s)	62, 271, 607, 850, 864, 895, 949
AjnI	CCWGG	3 cut(s)	202, 388, 427
AjuI	GAANNNNNNNTTGG	4 cut(s)	36, 68, 348, 380
AloI	GAACNNNNNNTCC	2 cut(s)	867, 899
AluBI	AGCT	7 cut(s)	72, 185, 610, 683, 840, 914, 1029
AluI	AGCT	7 cut(s)	72, 185, 610, 683, 840, 914, 1029
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	1 cut(s)	224
AlwI	GGATC	1 cut(s)	883
AoxI	GGCC	3 cut(s)	236, 331, 977
ApoI	RAATTY	1 cut(s)	830
Asp700I	GAANNNNTTC	2 cut(s)	51, 96
AspLEI	GCGC	1 cut(s)	251
AsuHPI	GGTGA	3 cut(s)	129, 365, 530
BaeGI	GKGCMC	1 cut(s)	925
BbrPI	CACGTG	1 cut(s)	527
BbsI	GAAGAC	2 cut(s)	902, 1017
Bbv12I	GWGCWC	1 cut(s)	119
BccI	CCATC	3 cut(s)	473, 533, 623
BciT130I	CCWGG	3 cut(s)	204, 390, 429
BclI	TGATCA	3 cut(s)	25, 465, 489
BcoDI	GTCTC	1 cut(s)	224
BfmI	CTRYAG	1 cut(s)	952
BglII	AGATCT	1 cut(s)	274
Bme1390I	CCNGG	3 cut(s)	204, 390, 429
BmiI	GGNNCC	2 cut(s)	674, 723
BmrFI	CCNGG	3 cut(s)	204, 390, 429
BmrI	ACTGGG	1 cut(s)	650
BmsI	GCATC	1 cut(s)	436
BmuI	ACTGGG	1 cut(s)	650
BpiI	GAAGAC	2 cut(s)	902, 1017
BsaAI	YACGTR	1 cut(s)	527
BsaBI	GATNNNNATC	1 cut(s)	213
BsaJI	CCNNGG	4 cut(s)	334, 388, 503, 624
Bsc4I	CCNNNNNNNGG	5 cut(s)	504, 629, 712, 713, 907
Bse1I	ACTGG	2 cut(s)	645, 995
Bse8I	GATNNNNATC	1 cut(s)	213
BseBI	CCWGG	3 cut(s)	204, 390, 429
BseDI	CCNNGG	4 cut(s)	334, 388, 503, 624
BseGI	GGATG	4 cut(s)	94, 214, 544, 634
BseJI	GATNNNNATC	1 cut(s)	213
BseLI	CCNNNNNNNGG	5 cut(s)	504, 629, 712, 713, 907
BseMII	CTCAG	2 cut(s)	219, 323
BseNI	ACTGG	2 cut(s)	645, 995
BseRI	GAGGAG	2 cut(s)	150, 1019
BseSI	GKGCMC	1 cut(s)	925
BseYI	CCCAGC	1 cut(s)	406
Bsh1236I	CGCG	1 cut(s)	249
BshFI	GGCC	3 cut(s)	238, 333, 979
BsiHKAI	GWGCWC	1 cut(s)	119
BslI	CCNNNNNNNGG	5 cut(s)	504, 629, 712, 713, 907
BsmAI	GTCTC	1 cut(s)	224
BsnI	GGCC	3 cut(s)	238, 333, 979
Bsp1286I	GDGCHC	2 cut(s)	119, 925
Bsp143I	GATC	7 cut(s)	25, 274, 465, 489, 558, 595, 875
BspACI	CCGC	2 cut(s)	667, 873
BspANI	GGCC	3 cut(s)	238, 333, 979
BspCNI	CTCAG	2 cut(s)	220, 322
BspFNI	CGCG	1 cut(s)	249
BspLI	GGNNCC	2 cut(s)	674, 723
BspPI	GGATC	1 cut(s)	883
BsrBI	CCGCTC	1 cut(s)	667
BsrI	ACTGG	2 cut(s)	645, 995
BssECI	CCNNGG	4 cut(s)	334, 388, 503, 624
BssMI	GATC	7 cut(s)	25, 274, 465, 489, 558, 595, 875
BssT1I	CCWWGG	3 cut(s)	334, 503, 624
Bst2UI	CCWGG	3 cut(s)	204, 390, 429
Bst4CI	ACNGT	3 cut(s)	419, 487, 550
BstBAI	YACGTR	1 cut(s)	527
BstC8I	GCNNGC	2 cut(s)	331, 635
BstDEI	CTNAG	5 cut(s)	176, 228, 309, 614, 969
BstF5I	GGATG	4 cut(s)	94, 214, 544, 634
BstFNI	CGCG	1 cut(s)	249
BstHHI	GCGC	1 cut(s)	251
BstKTI	GATC	7 cut(s)	28, 277, 468, 492, 561, 598, 878
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	7 cut(s)	25, 274, 465, 489, 558, 595, 875
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 377, 607, 695, 920
BstNI	CCWGG	3 cut(s)	204, 390, 429
BstNSI	RCATGY	1 cut(s)	82
BstSCI	CCNGG	3 cut(s)	202, 388, 427
BstSFI	CTRYAG	1 cut(s)	952
BstSLI	GKGCMC	1 cut(s)	925
BstUI	CGCG	1 cut(s)	249
BstV2I	GAAGAC	2 cut(s)	902, 1017
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
BsuRI	GGCC	3 cut(s)	238, 333, 979
BtsCI	GGATG	4 cut(s)	94, 214, 544, 634
BtsIMutI	CAGTG	1 cut(s)	129
Cac8I	GCNNGC	2 cut(s)	331, 635
CfoI	GCGC	1 cut(s)	251
CseI	GACGC	1 cut(s)	962
Csp6I	GTAC	2 cut(s)	385, 551
CspCI	CAANNNNNGTGG	2 cut(s)	699, 734
CviAII	CATG	1 cut(s)	79
CviQI	GTAC	2 cut(s)	385, 551
DdeI	CTNAG	5 cut(s)	176, 228, 309, 614, 969
DpnI	GATC	7 cut(s)	27, 276, 467, 491, 560, 597, 877
DpnII	GATC	7 cut(s)	25, 274, 465, 489, 558, 595, 875
DraI	TTTAAA	1 cut(s)	348
DraIII	CACNNNGTG	1 cut(s)	929
EaeI	YGGCCR	1 cut(s)	977
Eco130I	CCWWGG	3 cut(s)	334, 503, 624
Eco32I	GATATC	2 cut(s)	298, 434
Eco72I	CACGTG	1 cut(s)	527
EcoRII	CCWGG	3 cut(s)	202, 388, 427
EcoRV	GATATC	2 cut(s)	298, 434
EcoT14I	CCWWGG	3 cut(s)	334, 503, 624
ErhI	CCWWGG	3 cut(s)	334, 503, 624
FaeI	CATG	1 cut(s)	82
FalI	AAGNNNNNCTT	2 cut(s)	927, 959
FatI	CATG	1 cut(s)	78
FbaI	TGATCA	3 cut(s)	25, 465, 489
FokI	GGATG	4 cut(s)	101, 201, 551, 641
GlaI	GCGC	1 cut(s)	250
GsaI	CCCAGC	1 cut(s)	410
HaeIII	GGCC	3 cut(s)	238, 333, 979
HgaI	GACGC	1 cut(s)	962
HhaI	GCGC	1 cut(s)	251
Hin1II	CATG	1 cut(s)	82
Hin6I	GCGC	1 cut(s)	249
HinP1I	GCGC	1 cut(s)	249
HincII	GTYRAC	1 cut(s)	546
HindII	GTYRAC	1 cut(s)	546
HindIII	AAGCTT	1 cut(s)	70
HinfI	GANTC	1 cut(s)	134
HpaI	GTTAAC	1 cut(s)	546
HphI	GGTGA	3 cut(s)	129, 365, 530
Hpy166II	GTNNAC	3 cut(s)	173, 385, 546
Hpy188I	TCNGA	6 cut(s)	312, 465, 563, 595, 789, 880
Hpy188III	TCNNGA	4 cut(s)	218, 293, 604, 864
Hpy8I	GTNNAC	3 cut(s)	173, 385, 546
Hpy99I	CGWCG	1 cut(s)	978
HpyAV	CCTTC	2 cut(s)	315, 1014
HpyCH4III	ACNGT	3 cut(s)	419, 487, 550
HpyCH4IV	ACGT	1 cut(s)	526
HpyCH4V	TGCA	4 cut(s)	78, 449, 574, 710
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 377, 607, 695, 920
HpyF3I	CTNAG	5 cut(s)	176, 228, 309, 614, 969
HpySE526I	ACGT	1 cut(s)	526
Hsp92II	CATG	1 cut(s)	82
HspAI	GCGC	1 cut(s)	249
Ksp22I	TGATCA	3 cut(s)	25, 465, 489
KspAI	GTTAAC	1 cut(s)	546
Kzo9I	GATC	7 cut(s)	25, 274, 465, 489, 558, 595, 875
LmnI	GCTCC	4 cut(s)	615, 721, 837, 1026
LweI	GCATC	1 cut(s)	436
MaeII	ACGT	1 cut(s)	526
MaeIII	GTNAC	2 cut(s)	127, 419
MalI	GATC	7 cut(s)	27, 276, 467, 491, 560, 597, 877
MbiI	CCGCTC	1 cut(s)	667
MboI	GATC	7 cut(s)	25, 274, 465, 489, 558, 595, 875
MboII	GAAGA	9 cut(s)	50, 89, 824, 832, 838, 907, 947, 1022, 1029
MflI	RGATCY	1 cut(s)	274
MhlI	GDGCHC	2 cut(s)	119, 925
MluCI	AATT	3 cut(s)	63, 266, 830
MnlI	CCTC	6 cut(s)	25, 118, 171, 663, 997, 1000
MroXI	GAANNNNTTC	2 cut(s)	51, 96
MseI	TTAA	4 cut(s)	66, 347, 545, 758
MslI	CAYNNNNRTG	2 cut(s)	83, 219
MspR9I	CCNGG	3 cut(s)	204, 390, 429
MvaI	CCWGG	3 cut(s)	204, 390, 429
MvnI	CGCG	1 cut(s)	249
MwoI	GCNNNNNNNGC	5 cut(s)	11, 377, 607, 695, 920
NdeII	GATC	7 cut(s)	25, 274, 465, 489, 558, 595, 875
NlaIII	CATG	1 cut(s)	82
NlaIV	GGNNCC	2 cut(s)	674, 723
NmuCI	GTSAC	1 cut(s)	127
NspI	RCATGY	1 cut(s)	82
PdmI	GAANNNNTTC	2 cut(s)	51, 96
PfeI	GAWTC	1 cut(s)	134
PflMI	CCANNNNNTGG	1 cut(s)	504
PfoI	TCCNGGA	1 cut(s)	427
PmaCI	CACGTG	1 cut(s)	527
PmlI	CACGTG	1 cut(s)	527
Ppu21I	YACGTR	1 cut(s)	527
Psp6I	CCWGG	3 cut(s)	202, 388, 427
PspCI	CACGTG	1 cut(s)	527
PspFI	CCCAGC	1 cut(s)	406
PspGI	CCWGG	3 cut(s)	202, 388, 427
PspN4I	GGNNCC	2 cut(s)	674, 723
PsrI	GAACNNNNNNTAC	2 cut(s)	84, 116
PsuI	RGATCY	1 cut(s)	274
RsaI	GTAC	2 cut(s)	386, 552
RsaNI	GTAC	2 cut(s)	385, 551
RseI	CAYNNNNRTG	2 cut(s)	83, 219
SaqAI	TTAA	4 cut(s)	66, 347, 545, 758
Sau3AI	GATC	7 cut(s)	25, 274, 465, 489, 558, 595, 875
ScrFI	CCNGG	3 cut(s)	204, 390, 429
SduI	GDGCHC	2 cut(s)	119, 925
SfaNI	GCATC	1 cut(s)	436
SfcI	CTRYAG	1 cut(s)	952
SmiMI	CAYNNNNRTG	2 cut(s)	83, 219
Sse9I	AATT	3 cut(s)	63, 266, 830
SsiI	CCGC	2 cut(s)	667, 873
StyD4I	CCNGG	3 cut(s)	202, 388, 427
StyI	CCWWGG	3 cut(s)	334, 503, 624
TaaI	ACNGT	3 cut(s)	419, 487, 550
TaiI	ACGT	1 cut(s)	529
TaqI	TCGA	1 cut(s)	294
TaqII	GACCGA	1 cut(s)	1029
TasI	AATT	3 cut(s)	63, 266, 830
TfiI	GAWTC	1 cut(s)	134
Tru1I	TTAA	4 cut(s)	66, 347, 545, 758
Tru9I	TTAA	4 cut(s)	66, 347, 545, 758
TscAI	CASTG	1 cut(s)	136
TseFI	GTSAC	1 cut(s)	127
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	4 cut(s)	44, 105, 839, 948
TspRI	CASTG	1 cut(s)	136
Van91I	CCANNNNNTGG	1 cut(s)	504
XapI	RAATTY	1 cut(s)	830
XceI	RCATGY	1 cut(s)	82
XmnI	GAANNNNTTC	2 cut(s)	51, 96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.