Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0010399

Physical Location & Seq

Genomic Coordinates Reverse (-)

270718 .. 273281

Gene Structure 2564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1004400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGCGTTCCTTTTCCACAAATTTCAGGAGGGTGTGAGAACTCTTGCTAAACAACCCATGTTTAACAGGAATCCAAGGCAACTGCAGTTTGAGGCAGATATGAATCGCCTCTTCCTATATACCAGCTACAATCGCTTGGGAAGGGATGCGGATGAGGCAGATGTGGATGAGATCATTGACATGGCTAATAAAGCCTCCATTGCCGATCAACAGAAACAAGTCCAGGAAAACGTTCATCTCCAAATTAAAAACTTCTGCATGTCTATGGATGAAGTTCTACTCCCTGATGTTAAGAAGCTAAATGAGGGAACTGAATCACCTAAACAATCAAATGCTTCTACTCGACGAAGTGGTCTTAGTTTTGCCATTGGTAGGAATGGTCCACCAGTTAAACATCGTGATGTGCCCGAAACAAGGCCATTACAGAGCACTGATGTTTCTCAAAAGTTAAAAGATCTCTTCGGCTACACGCTTGATATCAAACCTTCTCAAATACCCCACAAGGAAGCAGGCCAAGGTTTATTTCTAAATGGTGAATGTGATGTTGGTGCCGTCGTGGCCGTGTACCCTGGTGTAGTATATTCCCCTGCGTATTACCGCTACATACCTGGATACCCAAGAGTTAATGCTCAAAACTCATATTTGATCACAAGGTATGATGGGACTGTGATCAATGCACAACCTTGGGGTTATGGGGGCGAAACCCGTGAATTTTGGGATGGTTTAACTGTTCCAGAAAACAGGCCTAATATGCAGGGAGATGAGAAAGGTCGAGATCGGATCTGGAGACTTCTCAGTAAGCCTTTGGATCAGAAGAAATTGGGAAACGGTGGCGACATAATAGAGCGGAGGAATCCATTAGCTTTGGCTCATTTTGCCAACCATCCTGGAAAGGATATGTCTCCAAATGTTATGGTTTGCCCTTATGACTTCCCGTTGACAGAAAAAGAAATGAGGGTCTATATTCCAAATGTAATATTTGGAGATGCAGAAGAAGTGAAGATGAAGAGATTTGGAAGCTTTTGGTTCAAGCTTGGAGGTTCAAAAAATAGCGGCTCAGACGTTCCTGTTTTGAAGAGTCTTGCCCTGGTGGCTACAAGGGCACTTAGCGATGAAGAAGTGCTTCTGAACTACAGGTTGAGCAACTCCAAGCGTCGGCCAGAGTGGTATAATCCTGTTGATGAGGAGGAAGATCGAAGGAGGTGGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

404

Amino Acids

45.97

Weight (kDa)

8.22

Isoelectric Point (pI)

47.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08270 AT5G23200
fragaria_vesca	FvH4_4g36990 FvH4_4g36990
malus_domestica	MD13G1004400.v1.1 MD16G1003200.v1.1
prunus_persica	Prupe.1G348200_v2.0.a1 Prupe.1G348200_v2.0.a1 Prupe.1G348200_v2.0.a1
pyrus_communis	pycom13g00380
rosa_chinensis	RchiOBHm_Chr4g0446781
rosa_laevigata	RLG00000005632
rosa_multiflora	Rmu_co8491361.1_g000001 Rmu_sc0001753.1_g000030
rosa_roxburghii	Rroxscaffold_5G00387100
rosa_rugosa	Rorug04G0374500
rosa_samantha	Rh4AG436000 Rh4BG444800 Rh4CG462100 Rh4DG443800
rosa_wichuraiana	Rw4G037270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	351
AccB1I	GGYRCC	1 cut(s)	548
AccBSI	CCGCTC	1 cut(s)	847
AciI	CCGC	4 cut(s)	149, 598, 847, 1053
AclI	AACGTT	1 cut(s)	231
AclWI	GGATC	2 cut(s)	788, 816
AcoI	YGGCCR	2 cut(s)	558, 1157
AcsI	RAATTY	2 cut(s)	20, 710
AfaI	GTAC	1 cut(s)	566
AfiI	CCNNNNNNNGG	3 cut(s)	372, 414, 1155
AgsI	TTSAA	3 cut(s)	1030, 1044, 1075
AjnI	CCWGG	5 cut(s)	222, 568, 607, 886, 1086
AjuI	GAANNNNNNNTTGG	4 cut(s)	507, 528, 539, 560
AluBI	AGCT	6 cut(s)	126, 298, 863, 1020, 1033, 1209
AluI	AGCT	6 cut(s)	126, 298, 863, 1020, 1033, 1209
Alw21I	GWGCWC	1 cut(s)	431
Alw26I	GTCTC	2 cut(s)	781, 906
AlwI	GGATC	2 cut(s)	788, 816
AoxI	GGCC	5 cut(s)	416, 511, 558, 743, 1157
ApoI	RAATTY	2 cut(s)	20, 710
Asp700I	GAANNNNTTC	2 cut(s)	231, 1122
AspS9I	GGNCC	1 cut(s)	380
AsuHPI	GGTGA	2 cut(s)	309, 545
AvaII	GGWCC	1 cut(s)	380
BaeGI	GKGCMC	2 cut(s)	408, 1105
BanI	GGYRCC	1 cut(s)	548
Bbv12I	GWGCWC	1 cut(s)	431
BccI	CCATC	3 cut(s)	653, 713, 891
BceAI	ACGGC	2 cut(s)	536, 545
BciT130I	CCWGG	5 cut(s)	224, 570, 609, 888, 1088
BciVI	GTATCC	1 cut(s)	605
BclI	TGATCA	2 cut(s)	645, 669
BcoDI	GTCTC	2 cut(s)	781, 906
BfmI	CTRYAG	2 cut(s)	83, 1132
BfuI	GTATCC	1 cut(s)	605
BglI	GCCNNNNNGGC	2 cut(s)	557, 1091
BglII	AGATCT	1 cut(s)	454
BisI	GCNGC	1 cut(s)	1054
BlsI	GCNGC	1 cut(s)	1055
Bme1390I	CCNGG	5 cut(s)	224, 570, 609, 888, 1088
Bme18I	GGWCC	1 cut(s)	380
BmgT120I	GGNCC	1 cut(s)	380
BmiI	GGNNCC	1 cut(s)	550
BmrFI	CCNGG	5 cut(s)	224, 570, 609, 888, 1088
BmsI	GCATC	2 cut(s)	136, 976
BpmI	CTGGAG	1 cut(s)	805
BsaBI	GATNNNNATC	1 cut(s)	102
BsaJI	CCNNGG	5 cut(s)	74, 514, 568, 683, 1086
Bsc4I	CCNNNNNNNGG	3 cut(s)	372, 414, 1155
Bse1I	ACTGG	1 cut(s)	386
Bse3DI	GCAATG	1 cut(s)	198
Bse8I	GATNNNNATC	1 cut(s)	102
BseBI	CCWGG	5 cut(s)	224, 570, 609, 888, 1088
BseDI	CCNNGG	5 cut(s)	74, 514, 568, 683, 1086
BseGI	GGATG	6 cut(s)	151, 157, 172, 274, 724, 883
BseJI	GATNNNNATC	1 cut(s)	102
BseLI	CCNNNNNNNGG	3 cut(s)	372, 414, 1155
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	2 cut(s)	808, 1071
BseNI	ACTGG	1 cut(s)	386
BseRI	GAGGAG	1 cut(s)	1199
BseSI	GKGCMC	2 cut(s)	408, 1105
BshFI	GGCC	5 cut(s)	418, 513, 560, 745, 1159
BshNI	GGYRCC	1 cut(s)	548
BsiHKAI	GWGCWC	1 cut(s)	431
BslFI	GGGAC	1 cut(s)	676
BslI	CCNNNNNNNGG	3 cut(s)	372, 414, 1155
BsmAI	GTCTC	2 cut(s)	781, 906
BsmFI	GGGAC	1 cut(s)	676
BsnI	GGCC	5 cut(s)	418, 513, 560, 745, 1159
Bsp1286I	GDGCHC	3 cut(s)	408, 431, 1105
Bsp143I	GATC	9 cut(s)	171, 205, 454, 645, 669, 775, 780, 808, 1192
BspACI	CCGC	4 cut(s)	149, 598, 847, 1053
BspANI	GGCC	5 cut(s)	418, 513, 560, 745, 1159
BspCNI	CTCAG	2 cut(s)	807, 1070
BspLI	GGNNCC	1 cut(s)	550
BspMAI	CTGCAG	1 cut(s)	87
BspPI	GGATC	2 cut(s)	788, 816
BspT107I	GGYRCC	1 cut(s)	548
BsrBI	CCGCTC	1 cut(s)	847
BsrDI	GCAATG	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	386
BssECI	CCNNGG	5 cut(s)	74, 514, 568, 683, 1086
BssMI	GATC	9 cut(s)	171, 205, 454, 645, 669, 775, 780, 808, 1192
BssT1I	CCWWGG	3 cut(s)	74, 514, 683
Bst2UI	CCWGG	5 cut(s)	224, 570, 609, 888, 1088
Bst4CI	ACNGT	3 cut(s)	667, 730, 830
Bst6I	CTCTTC	4 cut(s)	116, 464, 1001, 1070
BstC8I	GCNNGC	1 cut(s)	511
BstDEI	CTNAG	4 cut(s)	356, 794, 1057, 1106
BstF5I	GGATG	6 cut(s)	151, 157, 172, 274, 724, 883
BstKTI	GATC	9 cut(s)	174, 208, 457, 648, 672, 778, 783, 811, 1195
BstMAI	GTCTC	2 cut(s)	781, 906
BstMBI	GATC	9 cut(s)	171, 205, 454, 645, 669, 775, 780, 808, 1192
BstMWI	GCNNNNNNNGC	9 cut(s)	132, 155, 191, 200, 557, 751, 875, 1091, 1100
BstNI	CCWGG	5 cut(s)	224, 570, 609, 888, 1088
BstNSI	RCATGY	1 cut(s)	262
BstSCI	CCNGG	5 cut(s)	222, 568, 607, 886, 1086
BstSFI	CTRYAG	2 cut(s)	83, 1132
BstSLI	GKGCMC	2 cut(s)	408, 1105
BstX2I	RGATCY	2 cut(s)	454, 780
BstYI	RGATCY	2 cut(s)	454, 780
BsuI	GTATCC	1 cut(s)	605
BsuRI	GGCC	5 cut(s)	418, 513, 560, 745, 1159
BtgZI	GCGATG	1 cut(s)	1125
BtsCI	GGATG	6 cut(s)	151, 157, 172, 274, 724, 883
BtsIMutI	CAGTG	1 cut(s)	429
Cac8I	GCNNGC	1 cut(s)	511
Cfr13I	GGNCC	1 cut(s)	380
CseI	GACGC	1 cut(s)	1142
Csp6I	GTAC	1 cut(s)	565
CviAII	CATG	3 cut(s)	58, 181, 259
CviQI	GTAC	1 cut(s)	565
DdeI	CTNAG	4 cut(s)	356, 794, 1057, 1106
DpnI	GATC	9 cut(s)	173, 207, 456, 647, 671, 777, 782, 810, 1194
DpnII	GATC	9 cut(s)	171, 205, 454, 645, 669, 775, 780, 808, 1192
DrdI	GACNNNNNNGTC	1 cut(s)	351
DseDI	GACNNNNNNGTC	1 cut(s)	351
EaeI	YGGCCR	2 cut(s)	558, 1157
Eam1104I	CTCTTC	4 cut(s)	116, 464, 1001, 1070
EarI	CTCTTC	4 cut(s)	116, 464, 1001, 1070
Eco130I	CCWWGG	3 cut(s)	74, 514, 683
Eco147I	AGGCCT	1 cut(s)	745
Eco32I	GATATC	1 cut(s)	478
Eco47I	GGWCC	1 cut(s)	380
EcoRII	CCWGG	5 cut(s)	222, 568, 607, 886, 1086
EcoRV	GATATC	1 cut(s)	478
EcoT14I	CCWWGG	3 cut(s)	74, 514, 683
ErhI	CCWWGG	3 cut(s)	74, 514, 683
FaeI	CATG	3 cut(s)	61, 184, 262
FalI	AAGNNNNNCTT	2 cut(s)	1107, 1139
FaqI	GGGAC	1 cut(s)	676
FatI	CATG	3 cut(s)	57, 180, 258
FbaI	TGATCA	2 cut(s)	645, 669
Fnu4HI	GCNGC	1 cut(s)	1054
FokI	GGATG	6 cut(s)	158, 164, 179, 281, 731, 870
Fsp4HI	GCNGC	1 cut(s)	1054
GluI	GCNGC	1 cut(s)	1054
GsuI	CTGGAG	1 cut(s)	805
HaeIII	GGCC	5 cut(s)	418, 513, 560, 745, 1159
HgaI	GACGC	1 cut(s)	1142
Hin1II	CATG	3 cut(s)	61, 184, 262
HincII	GTYRAC	1 cut(s)	939
HindII	GTYRAC	1 cut(s)	939
HindIII	AAGCTT	2 cut(s)	1018, 1031
HinfI	GANTC	5 cut(s)	70, 103, 314, 853, 1078
HphI	GGTGA	2 cut(s)	309, 545
Hpy166II	GTNNAC	3 cut(s)	383, 565, 939
Hpy188I	TCNGA	4 cut(s)	780, 813, 1060, 1128
Hpy188III	TCNNGA	5 cut(s)	26, 398, 734, 773, 784
Hpy8I	GTNNAC	3 cut(s)	383, 565, 939
Hpy99I	CGWCG	3 cut(s)	348, 557, 1158
HpyAV	CCTTC	3 cut(s)	135, 495, 1191
HpyCH4III	ACNGT	3 cut(s)	667, 730, 830
HpyCH4IV	ACGT	2 cut(s)	231, 1062
HpyCH4V	TGCA	5 cut(s)	85, 258, 677, 754, 989
HpyF10VI	GCNNNNNNNGC	9 cut(s)	132, 155, 191, 200, 557, 751, 875, 1091, 1100
HpyF3I	CTNAG	4 cut(s)	356, 794, 1057, 1106
HpySE526I	ACGT	2 cut(s)	231, 1062
Hsp92II	CATG	3 cut(s)	61, 184, 262
Ksp22I	TGATCA	2 cut(s)	645, 669
Kzo9I	GATC	9 cut(s)	171, 205, 454, 645, 669, 775, 780, 808, 1192
LmnI	GCTCC	1 cut(s)	1206
LweI	GCATC	2 cut(s)	136, 976
MaeII	ACGT	2 cut(s)	231, 1062
MalI	GATC	9 cut(s)	173, 207, 456, 647, 671, 777, 782, 810, 1194
MbiI	CCGCTC	1 cut(s)	847
MboI	GATC	9 cut(s)	171, 205, 454, 645, 669, 775, 780, 808, 1192
MboII	GAAGA	9 cut(s)	103, 451, 826, 1004, 1012, 1018, 1087, 1127, 1202
MflI	RGATCY	2 cut(s)	454, 780
MhlI	GDGCHC	3 cut(s)	408, 431, 1105
MluCI	AATT	4 cut(s)	20, 243, 710, 818
MlyI	GAGTC	1 cut(s)	1087
MroXI	GAANNNNTTC	2 cut(s)	231, 1122
MseI	TTAA	7 cut(s)	63, 246, 291, 390, 449, 624, 725
MslI	CAYNNNNRTG	3 cut(s)	179, 263, 399
MspR9I	CCNGG	5 cut(s)	224, 570, 609, 888, 1088
MvaI	CCWGG	5 cut(s)	224, 570, 609, 888, 1088
MwoI	GCNNNNNNNGC	9 cut(s)	132, 155, 191, 200, 557, 751, 875, 1091, 1100
NdeII	GATC	9 cut(s)	171, 205, 454, 645, 669, 775, 780, 808, 1192
NlaIII	CATG	3 cut(s)	61, 184, 262
NlaIV	GGNNCC	1 cut(s)	550
NspI	RCATGY	1 cut(s)	262
PceI	AGGCCT	1 cut(s)	745
PdmI	GAANNNNTTC	2 cut(s)	231, 1122
PfeI	GAWTC	4 cut(s)	70, 103, 314, 853
PfoI	TCCNGGA	2 cut(s)	222, 886
PkrI	GCNGC	1 cut(s)	1055
PleI	GAGTC	1 cut(s)	1086
PpsI	GAGTC	1 cut(s)	1086
Psp1406I	AACGTT	1 cut(s)	231
Psp6I	CCWGG	5 cut(s)	222, 568, 607, 886, 1086
PspGI	CCWGG	5 cut(s)	222, 568, 607, 886, 1086
PspN4I	GGNNCC	1 cut(s)	550
PspPI	GGNCC	1 cut(s)	380
PstI	CTGCAG	1 cut(s)	87
PsuI	RGATCY	2 cut(s)	454, 780
RsaI	GTAC	1 cut(s)	566
RsaNI	GTAC	1 cut(s)	565
RseI	CAYNNNNRTG	3 cut(s)	179, 263, 399
SaqAI	TTAA	7 cut(s)	63, 246, 291, 390, 449, 624, 725
SatI	GCNGC	1 cut(s)	1054
Sau3AI	GATC	9 cut(s)	171, 205, 454, 645, 669, 775, 780, 808, 1192
Sau96I	GGNCC	1 cut(s)	380
SchI	GAGTC	1 cut(s)	1087
ScrFI	CCNGG	5 cut(s)	224, 570, 609, 888, 1088
SduI	GDGCHC	3 cut(s)	408, 431, 1105
SfaNI	GCATC	2 cut(s)	136, 976
SfcI	CTRYAG	2 cut(s)	83, 1132
SinI	GGWCC	1 cut(s)	380
SmiMI	CAYNNNNRTG	3 cut(s)	179, 263, 399
Sse9I	AATT	4 cut(s)	20, 243, 710, 818
SseBI	AGGCCT	1 cut(s)	745
SsiI	CCGC	4 cut(s)	149, 598, 847, 1053
SspI	AATATT	1 cut(s)	978
StuI	AGGCCT	1 cut(s)	745
StyD4I	CCNGG	5 cut(s)	222, 568, 607, 886, 1086
StyI	CCWWGG	3 cut(s)	74, 514, 683
TaaI	ACNGT	3 cut(s)	667, 730, 830
TaiI	ACGT	2 cut(s)	234, 1065
TaqI	TCGA	3 cut(s)	343, 772, 1195
TasI	AATT	4 cut(s)	20, 243, 710, 818
TauI	GCSGC	1 cut(s)	1056
TfiI	GAWTC	4 cut(s)	70, 103, 314, 853
Tru1I	TTAA	7 cut(s)	63, 246, 291, 390, 449, 624, 725
Tru9I	TTAA	7 cut(s)	63, 246, 291, 390, 449, 624, 725
TscAI	CASTG	1 cut(s)	436
TspDTI	ATGAA	5 cut(s)	116, 224, 285, 1019, 1128
TspRI	CASTG	1 cut(s)	436
VpaK11BI	GGWCC	1 cut(s)	380
XapI	RAATTY	2 cut(s)	20, 710
XceI	RCATGY	1 cut(s)	262
XmnI	GAANNNNTTC	2 cut(s)	231, 1122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.