Prupe.1G348200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0010399
Physical Location & Seq
Forward (+)
32527814 .. 32531454
3641 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G348200.3

Sequence Viewer

Length: 1212 bp
ATGGCTTTTCTTTTCCACAAGTTTCAGGAGTTTGTGAAGACTCTTGCCAAAAATTCCATGCTTTCTAAGAATCCAAGGCAACTACAATTTGAGGCAGATATTAATCGTCTCTTCCTATATACCAGCTACAATCGCTTGGGAAGGAATGCTGATGAAGCAGATGTGGATGAGATCATTGACATGGCTAGTAAAGCCCCTGTTGCTGATCAACAGAAGCAAGTCCAAGAAAACATTCATCTCCAAATTAAAAGCTTCTGCATGTCTATGGATGAACTTCTTCTCCCTGATGTTAAGAAGATAAATGAGGGAATTGAATCATCTGAACAATCAAATCCTGCTCCTCGACGAAGTGGTCTCAGTTTTGCTATTGGCAGGAATACTCCATCAGTTAAACATCATGATGTGCCCGAGACAAGGCCATTAGAGCGTGCTGATGTCTCTCAAAGATTAAAAGATCTCATTGGCTACACGCTTGATATCAAACCTTCTCAAATACCTCACAAGGAAGCAGGCCAAGGTTTATTTCTAAATGGCGAATGTGATGTTGGTGCTGTGGTGGCCATGTACCCTGGTGTAATATATTCCCCTGCTTATTACCGCTACATTCCTGGGTACCCAAGAGTTAATGCACAAAACTCGTATCTGATCACAAGGTATGACGGGACTGTGATCAATGCACAACCTTGGGGTTTTGGGGGTGAAACCCGTGATTTTTGGGATGGTTTTACTGTACCAGAAATTAGGCCTAATATGCAGGGAGGTGAGAAAGGTCCAGACCGGTTCTGGAAACTCCTTAGTAAGCCTTTGGATCAAAGGCAACTGGGAAATAGGGGCAACATTCTAGAGGGGAGGAACCCATTAGCTTTGGCTCATTTTGCCAACCACCCTGCAAAGGATATGGCCCCAAATGTTATGATTTGCCCTTATGACTTCCCATTGACCGAAAATGAAATGAGAGTCTATATTCCAAACGTGGTATTTGGAGATGCAGAAGAAGTGAAGATGAAGAGATTTGGCAGCTTTTGGTTCAAACTTGGGGGTTCAAGAAATGGCGGATCAGATATTCCTGTTTTGAAGACTCTTGTTCTGGTGGCTACAAGGGCACTTTGTGATGAAGAAGTTCTTCTGAACTATAGGTTGAGCAACTCTAAGCGTCGGCCAGAGTGGTATACTCCTGTTGACGAGGAGGAGGATCGAAGGAGGTGGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

404

Amino Acids

45.94

Weight (kDa)

6.69

Isoelectric Point (pI)

47.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 351
Acc65I GGTACC 1 cut(s) 612
AccB1I GGYRCC 1 cut(s) 612
AccI GTMKAC 1 cut(s) 1169
AciI CCGC 2 cut(s) 598, 1053
AclWI GGATC 3 cut(s) 816, 1063, 1200
AcoI YGGCCR 2 cut(s) 558, 1157
AcsI RAATTY 1 cut(s) 52
AdeI CACNNNGTG 1 cut(s) 1109
AfaI GTAC 3 cut(s) 566, 614, 732
AfiI CCNNNNNNNGG 2 cut(s) 414, 892
AgeI ACCGGT 1 cut(s) 777
AgsI TTSAA 4 cut(s) 314, 1030, 1044, 1075
AjnI CCWGG 2 cut(s) 568, 607
AjuI GAANNNNNNNTTGG 6 cut(s) 216, 248, 507, 528, 539, 560
AloI GAACNNNNNNTCC 2 cut(s) 264, 296
AluBI AGCT 5 cut(s) 126, 252, 863, 1020, 1209
AluI AGCT 5 cut(s) 126, 252, 863, 1020, 1209
Alw26I GTCTC 4 cut(s) 113, 359, 404, 442
AlwI GGATC 3 cut(s) 816, 1063, 1200
Ama87I CYCGRG 1 cut(s) 407
AoxI GGCC 6 cut(s) 416, 511, 558, 743, 900, 1157
ApeKI GCWGC 1 cut(s) 1017
ApoI RAATTY 1 cut(s) 52
AseI ATTAAT 1 cut(s) 102
AsiGI ACCGGT 1 cut(s) 777
Asp700I GAANNNNTTC 4 cut(s) 231, 276, 1119, 1122
Asp718I GGTACC 1 cut(s) 612
AspS9I GGNCC 2 cut(s) 770, 901
AsuHPI GGTGA 2 cut(s) 710, 773
AvaI CYCGRG 1 cut(s) 407
AvaII GGWCC 1 cut(s) 770
BaeGI GKGCMC 2 cut(s) 408, 1105
BalI TGGCCA 1 cut(s) 560
BanI GGYRCC 1 cut(s) 612
BbsI GAAGAC 2 cut(s) 44, 1082
BbvI GCAGC 1 cut(s) 1029
BccI CCATC 2 cut(s) 391, 713
BcgI CGANNNNNNTGC 2 cut(s) 618, 652
BciT130I CCWGG 2 cut(s) 570, 609
BclI TGATCA 3 cut(s) 205, 645, 669
BcoDI GTCTC 4 cut(s) 113, 359, 404, 442
BfaI CTAG 2 cut(s) 186, 842
BfmI CTRYAG 1 cut(s) 1132
BglII AGATCT 1 cut(s) 454
BisI GCNGC 1 cut(s) 1018
BlsI GCNGC 1 cut(s) 1019
Bme1390I CCNGG 2 cut(s) 570, 609
Bme18I GGWCC 1 cut(s) 770
BmeT110I CYCGRG 1 cut(s) 407
BmgT120I GGNCC 2 cut(s) 770, 901
BmiI GGNNCC 3 cut(s) 614, 854, 903
BmrFI CCNGG 2 cut(s) 570, 609
BmrI ACTGGG 1 cut(s) 830
BmsI GCATC 1 cut(s) 976
BmuI ACTGGG 1 cut(s) 830
BpiI GAAGAC 2 cut(s) 44, 1082
BsaBI GATNNNNATC 1 cut(s) 102
BsaI GGTCTC 1 cut(s) 359
BsaJI CCNNGG 5 cut(s) 74, 514, 568, 608, 683
BsaWI WCCGGW 1 cut(s) 777
BsaXI ACNNNNNCTCC 2 cut(s) 264, 294
Bsc4I CCNNNNNNNGG 2 cut(s) 414, 892
Bse118I RCCGGY 1 cut(s) 777
Bse1I ACTGG 1 cut(s) 825
Bse8I GATNNNNATC 1 cut(s) 102
BseBI CCWGG 2 cut(s) 570, 609
BseDI CCNNGG 5 cut(s) 74, 514, 568, 608, 683
BseGI GGATG 3 cut(s) 172, 274, 724
BseJI GATNNNNATC 1 cut(s) 102
BseLI CCNNNNNNNGG 2 cut(s) 414, 892
BseMII CTCAG 1 cut(s) 370
BseNI ACTGG 1 cut(s) 825
BseRI GAGGAG 3 cut(s) 330, 1199, 1202
BseSI GKGCMC 2 cut(s) 408, 1105
BseXI GCAGC 1 cut(s) 1029
BshFI GGCC 6 cut(s) 418, 513, 560, 745, 902, 1159
BshNI GGYRCC 1 cut(s) 612
BshTI ACCGGT 1 cut(s) 777
BsiHKCI CYCGRG 1 cut(s) 407
BsiSI CCGG 1 cut(s) 778
BslFI GGGAC 1 cut(s) 676
BslI CCNNNNNNNGG 2 cut(s) 414, 892
BsmAI GTCTC 4 cut(s) 113, 359, 404, 442
BsmBI CGTCTC 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 676
BsmI GAATGC 1 cut(s) 151
BsnI GGCC 6 cut(s) 418, 513, 560, 745, 902, 1159
Bso31I GGTCTC 1 cut(s) 359
BsoBI CYCGRG 1 cut(s) 407
Bsp1286I GDGCHC 2 cut(s) 408, 1105
Bsp143I GATC 8 cut(s) 171, 205, 454, 645, 669, 808, 1055, 1192
BspACI CCGC 2 cut(s) 598, 1053
BspANI GGCC 6 cut(s) 418, 513, 560, 745, 902, 1159
BspCNI CTCAG 1 cut(s) 369
BspHI TCATGA 1 cut(s) 397
BspLI GGNNCC 3 cut(s) 614, 854, 903
BspPI GGATC 3 cut(s) 816, 1063, 1200
BspT107I GGYRCC 1 cut(s) 612
BspTNI GGTCTC 1 cut(s) 359
BsrFI RCCGGY 1 cut(s) 777
BsrI ACTGG 1 cut(s) 825
BssAI RCCGGY 1 cut(s) 777
BssECI CCNNGG 5 cut(s) 74, 514, 568, 608, 683
BssMI GATC 8 cut(s) 171, 205, 454, 645, 669, 808, 1055, 1192
BssNAI GTATAC 1 cut(s) 1170
BssT1I CCWWGG 3 cut(s) 74, 514, 683
Bst1107I GTATAC 1 cut(s) 1170
Bst2UI CCWGG 2 cut(s) 570, 609
Bst4CI ACNGT 2 cut(s) 667, 730
Bst6I CTCTTC 2 cut(s) 116, 1001
BstC8I GCNNGC 2 cut(s) 429, 511
BstDEI CTNAG 4 cut(s) 66, 356, 794, 1149
BstF5I GGATG 3 cut(s) 172, 274, 724
BstKTI GATC 8 cut(s) 174, 208, 457, 648, 672, 811, 1058, 1195
BstMAI GTCTC 4 cut(s) 113, 359, 404, 442
BstMBI GATC 8 cut(s) 171, 205, 454, 645, 669, 808, 1055, 1192
BstMWI GCNNNNNNNGC 9 cut(s) 132, 155, 191, 200, 424, 557, 751, 875, 1100
BstNI CCWGG 2 cut(s) 570, 609
BstNSI RCATGY 1 cut(s) 262
BstSCI CCNGG 2 cut(s) 568, 607
BstSFI CTRYAG 1 cut(s) 1132
BstSLI GKGCMC 2 cut(s) 408, 1105
BstV1I GCAGC 1 cut(s) 1029
BstV2I GAAGAC 2 cut(s) 44, 1082
BstX2I RGATCY 1 cut(s) 454
BstYI RGATCY 1 cut(s) 454
BstZ17I GTATAC 1 cut(s) 1170
BsuRI GGCC 6 cut(s) 418, 513, 560, 745, 902, 1159
BtsCI GGATG 3 cut(s) 172, 274, 724
Cac8I GCNNGC 2 cut(s) 429, 511
CciI TCATGA 1 cut(s) 397
Cfr10I RCCGGY 1 cut(s) 777
Cfr13I GGNCC 2 cut(s) 770, 901
CseI GACGC 1 cut(s) 1142
Csp6I GTAC 3 cut(s) 565, 613, 731
CspAI ACCGGT 1 cut(s) 777
CviAII CATG 5 cut(s) 58, 181, 259, 398, 562
CviQI GTAC 3 cut(s) 565, 613, 731
DdeI CTNAG 4 cut(s) 66, 356, 794, 1149
DpnI GATC 8 cut(s) 173, 207, 456, 647, 671, 810, 1057, 1194
DpnII GATC 8 cut(s) 171, 205, 454, 645, 669, 808, 1055, 1192
DraIII CACNNNGTG 1 cut(s) 1109
DrdI GACNNNNNNGTC 1 cut(s) 351
DseDI GACNNNNNNGTC 1 cut(s) 351
EaeI YGGCCR 2 cut(s) 558, 1157
Eam1104I CTCTTC 2 cut(s) 116, 1001
EarI CTCTTC 2 cut(s) 116, 1001
EciI GGCGGA 1 cut(s) 1068
Eco130I CCWWGG 3 cut(s) 74, 514, 683
Eco147I AGGCCT 1 cut(s) 745
Eco31I GGTCTC 1 cut(s) 359
Eco32I GATATC 1 cut(s) 478
Eco47I GGWCC 1 cut(s) 770
Eco88I CYCGRG 1 cut(s) 407
EcoRII CCWGG 2 cut(s) 568, 607
EcoRV GATATC 1 cut(s) 478
EcoT14I CCWWGG 3 cut(s) 74, 514, 683
ErhI CCWWGG 3 cut(s) 74, 514, 683
Esp3I CGTCTC 1 cut(s) 113
FaeI CATG 5 cut(s) 61, 184, 262, 401, 565
FalI AAGNNNNNCTT 2 cut(s) 1107, 1139
FaqI GGGAC 1 cut(s) 676
FatI CATG 5 cut(s) 57, 180, 258, 397, 561
FbaI TGATCA 3 cut(s) 205, 645, 669
FblI GTMKAC 1 cut(s) 1169
Fnu4HI GCNGC 1 cut(s) 1018
FokI GGATG 3 cut(s) 179, 281, 731
Fsp4HI GCNGC 1 cut(s) 1018
FspBI CTAG 2 cut(s) 186, 842
GluI GCNGC 1 cut(s) 1018
HaeIII GGCC 6 cut(s) 418, 513, 560, 745, 902, 1159
HapII CCGG 1 cut(s) 778
HgaI GACGC 1 cut(s) 1142
Hin1II CATG 5 cut(s) 61, 184, 262, 401, 565
HincII GTYRAC 1 cut(s) 1180
HindII GTYRAC 1 cut(s) 1180
HindIII AAGCTT 1 cut(s) 250
HinfI GANTC 5 cut(s) 40, 70, 314, 957, 1078
HpaII CCGG 1 cut(s) 778
HphI GGTGA 2 cut(s) 710, 773
Hpy166II GTNNAC 2 cut(s) 1170, 1180
Hpy188I TCNGA 4 cut(s) 322, 645, 1060, 1128
Hpy188III TCNNGA 6 cut(s) 26, 398, 773, 784, 842, 1044
Hpy8I GTNNAC 2 cut(s) 1170, 1180
Hpy99I CGWCG 2 cut(s) 348, 1158
HpyAV CCTTC 3 cut(s) 135, 495, 1191
HpyCH4III ACNGT 2 cut(s) 667, 730
HpyCH4IV ACGT 1 cut(s) 972
HpyCH4V TGCA 6 cut(s) 258, 629, 677, 754, 890, 989
HpyF10VI GCNNNNNNNGC 9 cut(s) 132, 155, 191, 200, 424, 557, 751, 875, 1100
HpyF3I CTNAG 4 cut(s) 66, 356, 794, 1149
HpySE526I ACGT 1 cut(s) 972
Hsp92II CATG 5 cut(s) 61, 184, 262, 401, 565
KpnI GGTACC 1 cut(s) 616
Ksp22I TGATCA 3 cut(s) 205, 645, 669
Kzo9I GATC 8 cut(s) 171, 205, 454, 645, 669, 808, 1055, 1192
LmnI GCTCC 2 cut(s) 343, 1206
Lsp1109I GCAGC 1 cut(s) 1029
LweI GCATC 1 cut(s) 976
MaeI CTAG 2 cut(s) 186, 842
MaeII ACGT 1 cut(s) 972
MalI GATC 8 cut(s) 173, 207, 456, 647, 671, 810, 1057, 1194
MboI GATC 8 cut(s) 171, 205, 454, 645, 669, 808, 1055, 1192
MflI RGATCY 1 cut(s) 454
MhlI GDGCHC 2 cut(s) 408, 1105
MlsI TGGCCA 1 cut(s) 560
MluCI AATT 5 cut(s) 52, 86, 243, 309, 738
MluNI TGGCCA 1 cut(s) 560
MlyI GAGTC 3 cut(s) 34, 966, 1072
Mox20I TGGCCA 1 cut(s) 560
MroXI GAANNNNTTC 4 cut(s) 231, 276, 1119, 1122
MscI TGGCCA 1 cut(s) 560
MseI TTAA 6 cut(s) 102, 246, 291, 390, 449, 624
MslI CAYNNNNRTG 3 cut(s) 179, 263, 399
Msp20I TGGCCA 1 cut(s) 560
MspI CCGG 1 cut(s) 778
MspR9I CCNGG 2 cut(s) 570, 609
Mva1269I GAATGC 1 cut(s) 151
MvaI CCWGG 2 cut(s) 570, 609
MwoI GCNNNNNNNGC 9 cut(s) 132, 155, 191, 200, 424, 557, 751, 875, 1100
NdeII GATC 8 cut(s) 171, 205, 454, 645, 669, 808, 1055, 1192
NlaIII CATG 5 cut(s) 61, 184, 262, 401, 565
NlaIV GGNNCC 3 cut(s) 614, 854, 903
NspI RCATGY 1 cut(s) 262
PagI TCATGA 1 cut(s) 397
PceI AGGCCT 1 cut(s) 745
PctI GAATGC 1 cut(s) 151
PdmI GAANNNNTTC 4 cut(s) 231, 276, 1119, 1122
PfeI GAWTC 2 cut(s) 70, 314
PinAI ACCGGT 1 cut(s) 777
PkrI GCNGC 1 cut(s) 1019
PleI GAGTC 3 cut(s) 34, 965, 1072
PpsI GAGTC 3 cut(s) 34, 965, 1072
PshBI ATTAAT 1 cut(s) 102
Psp6I CCWGG 2 cut(s) 568, 607
PspGI CCWGG 2 cut(s) 568, 607
PspN4I GGNNCC 3 cut(s) 614, 854, 903
PspPI GGNCC 2 cut(s) 770, 901
PsuI RGATCY 1 cut(s) 454
RsaI GTAC 3 cut(s) 566, 614, 732
RsaNI GTAC 3 cut(s) 565, 613, 731
RseI CAYNNNNRTG 3 cut(s) 179, 263, 399
SaqAI TTAA 6 cut(s) 102, 246, 291, 390, 449, 624
SatI GCNGC 1 cut(s) 1018
Sau3AI GATC 8 cut(s) 171, 205, 454, 645, 669, 808, 1055, 1192
Sau96I GGNCC 2 cut(s) 770, 901
SchI GAGTC 3 cut(s) 34, 966, 1072
ScrFI CCNGG 2 cut(s) 570, 609
SduI GDGCHC 2 cut(s) 408, 1105
SfaNI GCATC 1 cut(s) 976
SfcI CTRYAG 1 cut(s) 1132
SinI GGWCC 1 cut(s) 770
SmiMI CAYNNNNRTG 3 cut(s) 179, 263, 399
Sse9I AATT 5 cut(s) 52, 86, 243, 309, 738
SseBI AGGCCT 1 cut(s) 745
SsiI CCGC 2 cut(s) 598, 1053
SspMI CTAG 2 cut(s) 186, 842
StuI AGGCCT 1 cut(s) 745
StyD4I CCNGG 2 cut(s) 568, 607
StyI CCWWGG 3 cut(s) 74, 514, 683
TaaI ACNGT 2 cut(s) 667, 730
TaiI ACGT 1 cut(s) 975
TaqI TCGA 2 cut(s) 343, 1195
TaqII GACCGA 1 cut(s) 956
TasI AATT 5 cut(s) 52, 86, 243, 309, 738
TfiI GAWTC 2 cut(s) 70, 314
Tru1I TTAA 6 cut(s) 102, 246, 291, 390, 449, 624
Tru9I TTAA 6 cut(s) 102, 246, 291, 390, 449, 624
TseI GCWGC 1 cut(s) 1017
TspDTI ATGAA 6 cut(s) 168, 224, 285, 963, 1019, 1128
VpaK11BI GGWCC 1 cut(s) 770
VspI ATTAAT 1 cut(s) 102
XapI RAATTY 1 cut(s) 52
XbaI TCTAGA 1 cut(s) 841
XceI RCATGY 1 cut(s) 262
XcmI CCANNNNNNNNNTGG 1 cut(s) 780
XmiI GTMKAC 1 cut(s) 1169
XmnI GAANNNNTTC 4 cut(s) 231, 276, 1119, 1122
XspI CTAG 2 cut(s) 186, 842
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.