Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0010399

Physical Location & Seq

Genomic Coordinates Forward (+)

69297254 .. 69300460

Gene Structure 3207 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG462100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGGCTTTTCTGTTCAACAAGTTTCAGGAGGCTGTCAAAGTTCTTGCGAAAAATTCCCCTATGCTTGCCAAGAATCCTAGGAAACTACAATTTGAGGCAGATATTAACCGCCTTTTCCTATATACCAGCTACAATCGCTTGGGAAAGGACGCTGATGAGGCAGATGTGGACGAGATTATTGACATGGCTAATAAAGCCTCTGTTGATGATCAACAGAAACAAGTCCAAGAAAACATCCATCTTCAAATTAAAAGCTTCTGCATGTCTATGGATGAACTTCTTCTACCTGATGTAAAGAACACAAATGAGGTCACTGAATCACCTAAACAATCAAATGCTACTCCTCAACGAAGTGGACTTAGTTTAGCTATTGGCAGGAACAGACCAGGAGATAAACATCCTGATGTGCCTGAGACAAGGCCATTAGAACGCGCTGATGTATCTCAAAAATTGAAAGATCTCATTGGCTACACTCTCGATATCAAACCTTCTCAGATACCCCATAAGGAAGCAGGCCAAGGTTTATTTTTAAATGGTGAATGTGATGTTGGTGCTGTGGTGGCTGTGTACCCTGGTGTAATATACTCCCCAGCATATTACCGTTACATTCCTGGATATCCAAGAGTTGATGCACAGAACTCATATCTGATCACAAGGTATGATGGAACTGTGATCAATGCCAAACCTTGGGGTTCTGGGGGTGAAACACGTGATTTCTGGGATGGGTTAACAGTACCAGAGATCAGACCTAATATGCAAGGAGATGAGAAAGGTTCAGATCGGCTCTTGAAGCTCCTAAGTAAGCCTTTGGATGGCAGGCGACTGGGAAAGAGTGGCGACATTATAGAGCGGAGGAACCCTTTAGCTTTGGCTCATTTTGCCAACCACCCAGCAAAGGGTGTGGAGCCGAATGTAATGATTTGCCCTTATGACTTCCCATTAACCGAAAAGGAAATGAGAGTTTATATTCCGAATGTAGTTTTTGGAAATGCAGAAGAAGTGAAGATGAAGAAATTTGGGAGCTTTTGGTTGAAACTTGGGAGTTCAAGAAATAGCGGATCAGATGTTCCTGTTTTGAAGACCCTTGTTATGGTAGCTACAAGGGCACTTTGTGATGAAGAAGTGCTTTTGAACTACAGGTTGAGCAACTCTAAGCGTCGGCCAGAGTGGTATAGTCCAGTCAATGAGGAGGAAGACCGAAGAAGGTGGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

404

Amino Acids

45.66

Weight (kDa)

7.61

Isoelectric Point (pI)

45.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08270 AT5G23200
fragaria_vesca	FvH4_4g36990 FvH4_4g36990
malus_domestica	MD13G1004400.v1.1 MD16G1003200.v1.1
prunus_persica	Prupe.1G348200_v2.0.a1 Prupe.1G348200_v2.0.a1 Prupe.1G348200_v2.0.a1
pyrus_communis	pycom13g00380
rosa_chinensis	RchiOBHm_Chr4g0446781
rosa_laevigata	RLG00000005632
rosa_multiflora	Rmu_co8491361.1_g000001 Rmu_sc0001753.1_g000030
rosa_roxburghii	Rroxscaffold_5G00387100
rosa_rugosa	Rorug04G0374500
rosa_samantha	Rh4AG436000 Rh4BG444800 Rh4CG462100 Rh4DG443800
rosa_wichuraiana	Rw4G037270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	687
AccBSI	CCGCTC	1 cut(s)	850
AccII	CGCG	1 cut(s)	432
AciI	CCGC	3 cut(s)	109, 850, 1056
AclWI	GGATC	1 cut(s)	1066
AcoI	YGGCCR	1 cut(s)	1160
AcsI	RAATTY	2 cut(s)	52, 1013
AcvI	CACGTG	1 cut(s)	710
AdeI	CACNNNGTG	1 cut(s)	1112
AfaI	GTAC	2 cut(s)	569, 735
AfiI	CCNNNNNNNGG	5 cut(s)	687, 812, 895, 896, 1090
AflIII	ACRYGT	1 cut(s)	707
AgsI	TTSAA	8 cut(s)	16, 245, 454, 790, 1033, 1047, 1078, 1132
AjnI	CCWGG	3 cut(s)	385, 571, 610
AjuI	GAANNNNNNNTTGG	2 cut(s)	531, 563
AloI	GAACNNNNNNTCC	2 cut(s)	1050, 1082
AluBI	AGCT	8 cut(s)	129, 255, 368, 793, 866, 1023, 1097, 1212
AluI	AGCT	8 cut(s)	129, 255, 368, 793, 866, 1023, 1097, 1212
Alw26I	GTCTC	1 cut(s)	407
AlwI	GGATC	1 cut(s)	1066
AoxI	GGCC	3 cut(s)	419, 514, 1160
ApoI	RAATTY	2 cut(s)	52, 1013
Asp700I	GAANNNNTTC	1 cut(s)	279
AspA2I	CCTAGG	1 cut(s)	77
AspLEI	GCGC	1 cut(s)	434
AsuHPI	GGTGA	3 cut(s)	312, 548, 713
AvrII	CCTAGG	1 cut(s)	77
BaeGI	GKGCMC	1 cut(s)	1108
BbrPI	CACGTG	1 cut(s)	710
BbsI	GAAGAC	2 cut(s)	1085, 1200
BccI	CCATC	4 cut(s)	246, 656, 716, 806
BciT130I	CCWGG	3 cut(s)	387, 573, 612
BclI	TGATCA	3 cut(s)	208, 648, 672
BcoDI	GTCTC	1 cut(s)	407
BfaI	CTAG	1 cut(s)	78
BfmI	CTRYAG	1 cut(s)	1135
BglII	AGATCT	1 cut(s)	457
BlnI	CCTAGG	1 cut(s)	77
Bme1390I	CCNGG	3 cut(s)	387, 573, 612
BmiI	GGNNCC	2 cut(s)	857, 906
BmrFI	CCNGG	3 cut(s)	387, 573, 612
BmrI	ACTGGG	1 cut(s)	833
BmsI	GCATC	1 cut(s)	619
BmuI	ACTGGG	1 cut(s)	833
BpiI	GAAGAC	2 cut(s)	1085, 1200
BsaAI	YACGTR	1 cut(s)	710
BsaBI	GATNNNNATC	1 cut(s)	396
BsaJI	CCNNGG	4 cut(s)	77, 517, 571, 686
Bsc4I	CCNNNNNNNGG	5 cut(s)	687, 812, 895, 896, 1090
Bse1I	ACTGG	2 cut(s)	828, 1178
Bse8I	GATNNNNATC	1 cut(s)	396
BseBI	CCWGG	3 cut(s)	387, 573, 612
BseDI	CCNNGG	4 cut(s)	77, 517, 571, 686
BseGI	GGATG	5 cut(s)	234, 277, 397, 727, 817
BseJI	GATNNNNATC	1 cut(s)	396
BseLI	CCNNNNNNNGG	5 cut(s)	687, 812, 895, 896, 1090
BseMII	CTCAG	2 cut(s)	402, 506
BseNI	ACTGG	2 cut(s)	828, 1178
BseRI	GAGGAG	2 cut(s)	333, 1202
BseSI	GKGCMC	1 cut(s)	1108
BseYI	CCCAGC	2 cut(s)	589, 889
Bsh1236I	CGCG	1 cut(s)	432
BshFI	GGCC	3 cut(s)	421, 516, 1162
BslI	CCNNNNNNNGG	5 cut(s)	687, 812, 895, 896, 1090
BsmAI	GTCTC	1 cut(s)	407
BsnI	GGCC	3 cut(s)	421, 516, 1162
Bsp1286I	GDGCHC	1 cut(s)	1108
Bsp143I	GATC	7 cut(s)	208, 457, 648, 672, 741, 778, 1058
BspACI	CCGC	3 cut(s)	109, 850, 1056
BspANI	GGCC	3 cut(s)	421, 516, 1162
BspCNI	CTCAG	2 cut(s)	403, 505
BspFNI	CGCG	1 cut(s)	432
BspLI	GGNNCC	2 cut(s)	857, 906
BspPI	GGATC	1 cut(s)	1066
BsrBI	CCGCTC	1 cut(s)	850
BsrI	ACTGG	2 cut(s)	828, 1178
BssECI	CCNNGG	4 cut(s)	77, 517, 571, 686
BssMI	GATC	7 cut(s)	208, 457, 648, 672, 741, 778, 1058
BssT1I	CCWWGG	3 cut(s)	77, 517, 686
Bst2UI	CCWGG	3 cut(s)	387, 573, 612
Bst4CI	ACNGT	3 cut(s)	602, 670, 733
BstBAI	YACGTR	1 cut(s)	710
BstC8I	GCNNGC	3 cut(s)	66, 514, 818
BstDEI	CTNAG	5 cut(s)	359, 411, 492, 797, 1152
BstF5I	GGATG	5 cut(s)	234, 277, 397, 727, 817
BstFNI	CGCG	1 cut(s)	432
BstHHI	GCGC	1 cut(s)	434
BstKTI	GATC	7 cut(s)	211, 460, 651, 675, 744, 781, 1061
BstMAI	GTCTC	1 cut(s)	407
BstMBI	GATC	7 cut(s)	208, 457, 648, 672, 741, 778, 1058
BstMWI	GCNNNNNNNGC	7 cut(s)	135, 158, 194, 560, 790, 878, 1103
BstNI	CCWGG	3 cut(s)	387, 573, 612
BstNSI	RCATGY	1 cut(s)	265
BstSCI	CCNGG	3 cut(s)	385, 571, 610
BstSFI	CTRYAG	1 cut(s)	1135
BstSLI	GKGCMC	1 cut(s)	1108
BstUI	CGCG	1 cut(s)	432
BstV2I	GAAGAC	2 cut(s)	1085, 1200
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
BsuRI	GGCC	3 cut(s)	421, 516, 1162
BtsCI	GGATG	5 cut(s)	234, 277, 397, 727, 817
BtsIMutI	CAGTG	1 cut(s)	312
Cac8I	GCNNGC	3 cut(s)	66, 514, 818
CfoI	GCGC	1 cut(s)	434
CseI	GACGC	2 cut(s)	158, 1145
Csp6I	GTAC	2 cut(s)	568, 734
CspCI	CAANNNNNGTGG	2 cut(s)	882, 917
CviAII	CATG	2 cut(s)	184, 262
CviQI	GTAC	2 cut(s)	568, 734
DdeI	CTNAG	5 cut(s)	359, 411, 492, 797, 1152
DpnI	GATC	7 cut(s)	210, 459, 650, 674, 743, 780, 1060
DpnII	GATC	7 cut(s)	208, 457, 648, 672, 741, 778, 1058
DraI	TTTAAA	1 cut(s)	531
DraIII	CACNNNGTG	1 cut(s)	1112
EaeI	YGGCCR	1 cut(s)	1160
Eco130I	CCWWGG	3 cut(s)	77, 517, 686
Eco32I	GATATC	2 cut(s)	481, 617
Eco72I	CACGTG	1 cut(s)	710
EcoRII	CCWGG	3 cut(s)	385, 571, 610
EcoRV	GATATC	2 cut(s)	481, 617
EcoT14I	CCWWGG	3 cut(s)	77, 517, 686
ErhI	CCWWGG	3 cut(s)	77, 517, 686
FaeI	CATG	2 cut(s)	187, 265
FalI	AAGNNNNNCTT	4 cut(s)	790, 822, 1110, 1142
FatI	CATG	2 cut(s)	183, 261
FbaI	TGATCA	3 cut(s)	208, 648, 672
FokI	GGATG	5 cut(s)	221, 284, 384, 734, 824
FspBI	CTAG	1 cut(s)	78
GlaI	GCGC	1 cut(s)	433
GsaI	CCCAGC	2 cut(s)	593, 893
HaeIII	GGCC	3 cut(s)	421, 516, 1162
HgaI	GACGC	2 cut(s)	158, 1145
HhaI	GCGC	1 cut(s)	434
Hin1II	CATG	2 cut(s)	187, 265
Hin6I	GCGC	1 cut(s)	432
HinP1I	GCGC	1 cut(s)	432
HincII	GTYRAC	1 cut(s)	729
HindII	GTYRAC	1 cut(s)	729
HindIII	AAGCTT	1 cut(s)	253
HinfI	GANTC	2 cut(s)	73, 317
HpaI	GTTAAC	1 cut(s)	729
HphI	GGTGA	3 cut(s)	312, 548, 713
Hpy166II	GTNNAC	4 cut(s)	169, 356, 568, 729
Hpy188I	TCNGA	6 cut(s)	495, 648, 746, 778, 972, 1063
Hpy188III	TCNNGA	5 cut(s)	26, 401, 476, 787, 1047
Hpy8I	GTNNAC	4 cut(s)	169, 356, 568, 729
Hpy99I	CGWCG	1 cut(s)	1161
HpyAV	CCTTC	2 cut(s)	498, 1197
HpyCH4III	ACNGT	3 cut(s)	602, 670, 733
HpyCH4IV	ACGT	1 cut(s)	709
HpyCH4V	TGCA	4 cut(s)	261, 632, 757, 992
HpyF10VI	GCNNNNNNNGC	7 cut(s)	135, 158, 194, 560, 790, 878, 1103
HpyF3I	CTNAG	5 cut(s)	359, 411, 492, 797, 1152
HpySE526I	ACGT	1 cut(s)	709
Hsp92II	CATG	2 cut(s)	187, 265
HspAI	GCGC	1 cut(s)	432
Ksp22I	TGATCA	3 cut(s)	208, 648, 672
KspAI	GTTAAC	1 cut(s)	729
Kzo9I	GATC	7 cut(s)	208, 457, 648, 672, 741, 778, 1058
LmnI	GCTCC	4 cut(s)	798, 904, 1020, 1209
LweI	GCATC	1 cut(s)	619
MaeI	CTAG	1 cut(s)	78
MaeII	ACGT	1 cut(s)	709
MaeIII	GTNAC	2 cut(s)	310, 602
MalI	GATC	7 cut(s)	210, 459, 650, 674, 743, 780, 1060
MbiI	CCGCTC	1 cut(s)	850
MboI	GATC	7 cut(s)	208, 457, 648, 672, 741, 778, 1058
MboII	GAAGA	9 cut(s)	233, 272, 1007, 1015, 1021, 1090, 1130, 1205, 1212
MflI	RGATCY	1 cut(s)	457
MhlI	GDGCHC	1 cut(s)	1108
MluCI	AATT	5 cut(s)	52, 89, 246, 449, 1013
MnlI	CCTC	9 cut(s)	22, 88, 151, 208, 301, 354, 846, 1180, 1183
MroXI	GAANNNNTTC	1 cut(s)	279
MseI	TTAA	5 cut(s)	105, 249, 530, 728, 941
MslI	CAYNNNNRTG	2 cut(s)	266, 402
MspR9I	CCNGG	3 cut(s)	387, 573, 612
MvaI	CCWGG	3 cut(s)	387, 573, 612
MvnI	CGCG	1 cut(s)	432
MwoI	GCNNNNNNNGC	7 cut(s)	135, 158, 194, 560, 790, 878, 1103
NdeII	GATC	7 cut(s)	208, 457, 648, 672, 741, 778, 1058
NlaIII	CATG	2 cut(s)	187, 265
NlaIV	GGNNCC	2 cut(s)	857, 906
NmuCI	GTSAC	1 cut(s)	310
NspI	RCATGY	1 cut(s)	265
PdmI	GAANNNNTTC	1 cut(s)	279
PfeI	GAWTC	2 cut(s)	73, 317
PflMI	CCANNNNNTGG	1 cut(s)	687
PfoI	TCCNGGA	1 cut(s)	610
PmaCI	CACGTG	1 cut(s)	710
PmlI	CACGTG	1 cut(s)	710
Ppu21I	YACGTR	1 cut(s)	710
Psp6I	CCWGG	3 cut(s)	385, 571, 610
PspCI	CACGTG	1 cut(s)	710
PspFI	CCCAGC	2 cut(s)	589, 889
PspGI	CCWGG	3 cut(s)	385, 571, 610
PspN4I	GGNNCC	2 cut(s)	857, 906
PsrI	GAACNNNNNNTAC	2 cut(s)	267, 299
PsuI	RGATCY	1 cut(s)	457
RsaI	GTAC	2 cut(s)	569, 735
RsaNI	GTAC	2 cut(s)	568, 734
RseI	CAYNNNNRTG	2 cut(s)	266, 402
SaqAI	TTAA	5 cut(s)	105, 249, 530, 728, 941
Sau3AI	GATC	7 cut(s)	208, 457, 648, 672, 741, 778, 1058
ScrFI	CCNGG	3 cut(s)	387, 573, 612
SduI	GDGCHC	1 cut(s)	1108
SfaNI	GCATC	1 cut(s)	619
SfcI	CTRYAG	1 cut(s)	1135
SmiMI	CAYNNNNRTG	2 cut(s)	266, 402
Sse9I	AATT	5 cut(s)	52, 89, 246, 449, 1013
SsiI	CCGC	3 cut(s)	109, 850, 1056
SspMI	CTAG	1 cut(s)	78
StyD4I	CCNGG	3 cut(s)	385, 571, 610
StyI	CCWWGG	3 cut(s)	77, 517, 686
TaaI	ACNGT	3 cut(s)	602, 670, 733
TaiI	ACGT	1 cut(s)	712
TaqI	TCGA	1 cut(s)	477
TaqII	GACCGA	1 cut(s)	1212
TasI	AATT	5 cut(s)	52, 89, 246, 449, 1013
TfiI	GAWTC	2 cut(s)	73, 317
Tru1I	TTAA	5 cut(s)	105, 249, 530, 728, 941
Tru9I	TTAA	5 cut(s)	105, 249, 530, 728, 941
TscAI	CASTG	1 cut(s)	319
TseFI	GTSAC	1 cut(s)	310
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	3 cut(s)	288, 1022, 1131
TspRI	CASTG	1 cut(s)	319
Van91I	CCANNNNNTGG	1 cut(s)	687
XapI	RAATTY	2 cut(s)	52, 1013
XceI	RCATGY	1 cut(s)	265
XmaJI	CCTAGG	1 cut(s)	77
XmnI	GAANNNNTTC	1 cut(s)	279
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.