Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0010399

Physical Location & Seq

Genomic Coordinates Forward (+)

63951599 .. 63954664

Gene Structure 3066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G037270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGCTTTTCTGTTCAACAAGTTTCAGGAGGCTGTCAAAGTTCTTGCGAAAAATTCCCCTATGCTTGCCAAGAATCCTAGGAAACTACAATTTGAGGCAGATATTAACCGCCTTTTCCTATATACCAGCTACAATCGCTTGGGAAAGGACGCTGATGAGGCAGATGTGGACGAGATTATTGACATGGCTAATAAAGCCTCTGTTGATGATCAACAGAAACAAGTCCAAGAAAACATTCATCTTCAAATTAAAAGCTTCTGCATGTCTATGGATGAACTTCTTCTACCTGATGTAAAGAGCACAAATGAGGTCACTGAATCACCTAAACAATCAAATGCTACTCCTCAACGAAGTGGACTTAGTTTAGCTATTGGCAGGAACAGACCAGGAGATAAACATCCTGATGTGCCTGAGACAAGGCCATTAGAACGCGCTGATGTATCTCAAAAATTGAAAGATCTCATTGGCTACACTCTCGATATCAAACCTTCTCAGATACCCCATAAGGAAGCAGGCCAAGGTTTATTTTTAAATGGTGAATGTGATGTTGGTGCTGTGGTGGCTGTGTACCCTGGTGTAATATACTCCCCAGCATATTACCGTTACATTCCTGGATATCCGAGAGTTGATGCACAGAACTCATATCTGATCACAAGGTATGATGGAACTGTGATCAATGCCAAACCTTGGGCTTCTGGGGGTGAAACACGTGATTTCTGGGATGGGTTAACAGTACCAGAGATCAGACCTAATATGCAAGGAGATGAGAAAGGTTCAGATCGGCTCTTGAAGCTCCTAAGTAAGCCCTTGGATGGCAGGACTGGGAAAGAGTGGCGACATTGTAGAGGTGTGGAGCCGAATGTAATGATTTGCCCTTATGACTTCCCATTAACCGAAAAGGAAATGAGAGTTTATATTCCGAATGTAGTTTTTGGAAATGCAGAAGAAGTGAAGATGAAGAAATTTGGGAGCTTTTGGTTGAAACTTGGGAGTTCAAGAAATAGCGGATCAGATGTTCCTGTTTTGAAGACCCTTGTTATGGTAGCTACAAGGGCACTTTGTGATGAAGAAGTGCTTTTGAACTACAGGTTGAGCAACTCTAAGCGTCGGCCAGAGTGGTATAGTCCAGTCAATGAGGAAGAAGACCGAAGAAGGTGGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

387

Amino Acids

43.94

Weight (kDa)

6.92

Isoelectric Point (pI)

42.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08270 AT5G23200
fragaria_vesca	FvH4_4g36990 FvH4_4g36990
malus_domestica	MD13G1004400.v1.1 MD16G1003200.v1.1
prunus_persica	Prupe.1G348200_v2.0.a1 Prupe.1G348200_v2.0.a1 Prupe.1G348200_v2.0.a1
pyrus_communis	pycom13g00380
rosa_chinensis	RchiOBHm_Chr4g0446781
rosa_laevigata	RLG00000005632
rosa_multiflora	Rmu_co8491361.1_g000001 Rmu_sc0001753.1_g000030
rosa_roxburghii	Rroxscaffold_5G00387100
rosa_rugosa	Rorug04G0374500
rosa_samantha	Rh4AG436000 Rh4BG444800 Rh4CG462100 Rh4DG443800
rosa_wichuraiana	Rw4G037270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	687
AccII	CGCG	1 cut(s)	432
AciI	CCGC	2 cut(s)	109, 1005
AclWI	GGATC	1 cut(s)	1015
AcoI	YGGCCR	1 cut(s)	1109
AcsI	RAATTY	2 cut(s)	52, 962
AcvI	CACGTG	1 cut(s)	710
AdeI	CACNNNGTG	1 cut(s)	1061
AfaI	GTAC	2 cut(s)	569, 735
AfiI	CCNNNNNNNGG	3 cut(s)	687, 812, 1039
AflIII	ACRYGT	1 cut(s)	707
AgsI	TTSAA	8 cut(s)	16, 245, 454, 790, 982, 996, 1027, 1081
AjnI	CCWGG	3 cut(s)	385, 571, 610
AjuI	GAANNNNNNNTTGG	4 cut(s)	219, 251, 531, 563
AloI	GAACNNNNNNTCC	2 cut(s)	999, 1031
AluBI	AGCT	7 cut(s)	129, 255, 368, 793, 972, 1046, 1161
AluI	AGCT	7 cut(s)	129, 255, 368, 793, 972, 1046, 1161
Alw21I	GWGCWC	1 cut(s)	302
Alw26I	GTCTC	1 cut(s)	407
AlwI	GGATC	1 cut(s)	1015
AoxI	GGCC	3 cut(s)	419, 514, 1109
ApoI	RAATTY	2 cut(s)	52, 962
Asp700I	GAANNNNTTC	2 cut(s)	234, 279
AspA2I	CCTAGG	1 cut(s)	77
AspLEI	GCGC	1 cut(s)	434
AsuHPI	GGTGA	3 cut(s)	312, 548, 713
AvrII	CCTAGG	1 cut(s)	77
BaeGI	GKGCMC	1 cut(s)	1057
BbrPI	CACGTG	1 cut(s)	710
BbsI	GAAGAC	2 cut(s)	1034, 1149
Bbv12I	GWGCWC	1 cut(s)	302
BccI	CCATC	3 cut(s)	656, 716, 806
BciT130I	CCWGG	3 cut(s)	387, 573, 612
BclI	TGATCA	3 cut(s)	208, 648, 672
BcoDI	GTCTC	1 cut(s)	407
BfaI	CTAG	1 cut(s)	78
BfmI	CTRYAG	1 cut(s)	1084
BglII	AGATCT	1 cut(s)	457
BlnI	CCTAGG	1 cut(s)	77
Bme1390I	CCNGG	3 cut(s)	387, 573, 612
BmiI	GGNNCC	1 cut(s)	855
BmrFI	CCNGG	3 cut(s)	387, 573, 612
BmrI	ACTGGG	1 cut(s)	831
BmsI	GCATC	1 cut(s)	619
BmuI	ACTGGG	1 cut(s)	831
BpiI	GAAGAC	2 cut(s)	1034, 1149
BsaAI	YACGTR	1 cut(s)	710
BsaBI	GATNNNNATC	1 cut(s)	396
BsaJI	CCNNGG	5 cut(s)	77, 517, 571, 686, 807
Bsc4I	CCNNNNNNNGG	3 cut(s)	687, 812, 1039
Bse1I	ACTGG	2 cut(s)	826, 1127
Bse8I	GATNNNNATC	1 cut(s)	396
BseBI	CCWGG	3 cut(s)	387, 573, 612
BseDI	CCNNGG	5 cut(s)	77, 517, 571, 686, 807
BseGI	GGATG	4 cut(s)	277, 397, 727, 817
BseJI	GATNNNNATC	1 cut(s)	396
BseLI	CCNNNNNNNGG	3 cut(s)	687, 812, 1039
BseMII	CTCAG	2 cut(s)	402, 506
BseNI	ACTGG	2 cut(s)	826, 1127
BseRI	GAGGAG	1 cut(s)	333
BseSI	GKGCMC	1 cut(s)	1057
BseYI	CCCAGC	1 cut(s)	589
Bsh1236I	CGCG	1 cut(s)	432
BshFI	GGCC	3 cut(s)	421, 516, 1111
BsiHKAI	GWGCWC	1 cut(s)	302
BslI	CCNNNNNNNGG	3 cut(s)	687, 812, 1039
BsmAI	GTCTC	1 cut(s)	407
BsnI	GGCC	3 cut(s)	421, 516, 1111
Bsp1286I	GDGCHC	2 cut(s)	302, 1057
Bsp143I	GATC	7 cut(s)	208, 457, 648, 672, 741, 778, 1007
BspACI	CCGC	2 cut(s)	109, 1005
BspANI	GGCC	3 cut(s)	421, 516, 1111
BspCNI	CTCAG	2 cut(s)	403, 505
BspFNI	CGCG	1 cut(s)	432
BspLI	GGNNCC	1 cut(s)	855
BspPI	GGATC	1 cut(s)	1015
BsrI	ACTGG	2 cut(s)	826, 1127
BssECI	CCNNGG	5 cut(s)	77, 517, 571, 686, 807
BssMI	GATC	7 cut(s)	208, 457, 648, 672, 741, 778, 1007
BssT1I	CCWWGG	4 cut(s)	77, 517, 686, 807
Bst2UI	CCWGG	3 cut(s)	387, 573, 612
Bst4CI	ACNGT	3 cut(s)	602, 670, 733
BstBAI	YACGTR	1 cut(s)	710
BstC8I	GCNNGC	2 cut(s)	66, 514
BstDEI	CTNAG	5 cut(s)	359, 411, 492, 797, 1101
BstF5I	GGATG	4 cut(s)	277, 397, 727, 817
BstFNI	CGCG	1 cut(s)	432
BstHHI	GCGC	1 cut(s)	434
BstKTI	GATC	7 cut(s)	211, 460, 651, 675, 744, 781, 1010
BstMAI	GTCTC	1 cut(s)	407
BstMBI	GATC	7 cut(s)	208, 457, 648, 672, 741, 778, 1007
BstMWI	GCNNNNNNNGC	6 cut(s)	135, 158, 194, 560, 790, 1052
BstNI	CCWGG	3 cut(s)	387, 573, 612
BstNSI	RCATGY	1 cut(s)	265
BstSCI	CCNGG	3 cut(s)	385, 571, 610
BstSFI	CTRYAG	1 cut(s)	1084
BstSLI	GKGCMC	1 cut(s)	1057
BstUI	CGCG	1 cut(s)	432
BstV2I	GAAGAC	2 cut(s)	1034, 1149
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
BsuRI	GGCC	3 cut(s)	421, 516, 1111
BtsCI	GGATG	4 cut(s)	277, 397, 727, 817
BtsIMutI	CAGTG	1 cut(s)	312
Cac8I	GCNNGC	2 cut(s)	66, 514
CfoI	GCGC	1 cut(s)	434
CseI	GACGC	2 cut(s)	158, 1094
Csp6I	GTAC	2 cut(s)	568, 734
CviAII	CATG	2 cut(s)	184, 262
CviQI	GTAC	2 cut(s)	568, 734
DdeI	CTNAG	5 cut(s)	359, 411, 492, 797, 1101
DpnI	GATC	7 cut(s)	210, 459, 650, 674, 743, 780, 1009
DpnII	GATC	7 cut(s)	208, 457, 648, 672, 741, 778, 1007
DraI	TTTAAA	1 cut(s)	531
DraIII	CACNNNGTG	1 cut(s)	1061
EaeI	YGGCCR	1 cut(s)	1109
Eco130I	CCWWGG	4 cut(s)	77, 517, 686, 807
Eco32I	GATATC	2 cut(s)	481, 617
Eco72I	CACGTG	1 cut(s)	710
EcoRII	CCWGG	3 cut(s)	385, 571, 610
EcoRV	GATATC	2 cut(s)	481, 617
EcoT14I	CCWWGG	4 cut(s)	77, 517, 686, 807
ErhI	CCWWGG	4 cut(s)	77, 517, 686, 807
FaeI	CATG	2 cut(s)	187, 265
FalI	AAGNNNNNCTT	2 cut(s)	1059, 1091
FatI	CATG	2 cut(s)	183, 261
FbaI	TGATCA	3 cut(s)	208, 648, 672
FokI	GGATG	4 cut(s)	284, 384, 734, 824
FspBI	CTAG	1 cut(s)	78
GlaI	GCGC	1 cut(s)	433
GsaI	CCCAGC	1 cut(s)	593
HaeIII	GGCC	3 cut(s)	421, 516, 1111
HgaI	GACGC	2 cut(s)	158, 1094
HhaI	GCGC	1 cut(s)	434
Hin1II	CATG	2 cut(s)	187, 265
Hin6I	GCGC	1 cut(s)	432
HinP1I	GCGC	1 cut(s)	432
HincII	GTYRAC	1 cut(s)	729
HindII	GTYRAC	1 cut(s)	729
HindIII	AAGCTT	1 cut(s)	253
HinfI	GANTC	2 cut(s)	73, 317
HpaI	GTTAAC	1 cut(s)	729
HphI	GGTGA	3 cut(s)	312, 548, 713
Hpy166II	GTNNAC	4 cut(s)	169, 356, 568, 729
Hpy188I	TCNGA	7 cut(s)	495, 621, 648, 746, 778, 921, 1012
Hpy188III	TCNNGA	5 cut(s)	26, 401, 476, 787, 996
Hpy8I	GTNNAC	4 cut(s)	169, 356, 568, 729
Hpy99I	CGWCG	1 cut(s)	1110
HpyAV	CCTTC	2 cut(s)	498, 1146
HpyCH4III	ACNGT	3 cut(s)	602, 670, 733
HpyCH4IV	ACGT	1 cut(s)	709
HpyCH4V	TGCA	4 cut(s)	261, 632, 757, 941
HpyF10VI	GCNNNNNNNGC	6 cut(s)	135, 158, 194, 560, 790, 1052
HpyF3I	CTNAG	5 cut(s)	359, 411, 492, 797, 1101
HpySE526I	ACGT	1 cut(s)	709
Hsp92II	CATG	2 cut(s)	187, 265
HspAI	GCGC	1 cut(s)	432
Ksp22I	TGATCA	3 cut(s)	208, 648, 672
KspAI	GTTAAC	1 cut(s)	729
Kzo9I	GATC	7 cut(s)	208, 457, 648, 672, 741, 778, 1007
LmnI	GCTCC	4 cut(s)	798, 853, 969, 1158
LweI	GCATC	1 cut(s)	619
MaeI	CTAG	1 cut(s)	78
MaeII	ACGT	1 cut(s)	709
MaeIII	GTNAC	2 cut(s)	310, 602
MalI	GATC	7 cut(s)	210, 459, 650, 674, 743, 780, 1009
MboI	GATC	7 cut(s)	208, 457, 648, 672, 741, 778, 1007
MflI	RGATCY	1 cut(s)	457
MhlI	GDGCHC	2 cut(s)	302, 1057
MluCI	AATT	5 cut(s)	52, 89, 246, 449, 962
MnlI	CCTC	8 cut(s)	22, 88, 151, 208, 301, 354, 839, 1129
MroXI	GAANNNNTTC	2 cut(s)	234, 279
MseI	TTAA	5 cut(s)	105, 249, 530, 728, 890
MslI	CAYNNNNRTG	2 cut(s)	266, 402
MspR9I	CCNGG	3 cut(s)	387, 573, 612
MvaI	CCWGG	3 cut(s)	387, 573, 612
MvnI	CGCG	1 cut(s)	432
MwoI	GCNNNNNNNGC	6 cut(s)	135, 158, 194, 560, 790, 1052
NdeII	GATC	7 cut(s)	208, 457, 648, 672, 741, 778, 1007
NlaIII	CATG	2 cut(s)	187, 265
NlaIV	GGNNCC	1 cut(s)	855
NmuCI	GTSAC	1 cut(s)	310
NspI	RCATGY	1 cut(s)	265
PdmI	GAANNNNTTC	2 cut(s)	234, 279
PfeI	GAWTC	2 cut(s)	73, 317
PflMI	CCANNNNNTGG	1 cut(s)	687
PfoI	TCCNGGA	1 cut(s)	610
PmaCI	CACGTG	1 cut(s)	710
PmlI	CACGTG	1 cut(s)	710
Ppu21I	YACGTR	1 cut(s)	710
Psp6I	CCWGG	3 cut(s)	385, 571, 610
PspCI	CACGTG	1 cut(s)	710
PspFI	CCCAGC	1 cut(s)	589
PspGI	CCWGG	3 cut(s)	385, 571, 610
PspN4I	GGNNCC	1 cut(s)	855
PsrI	GAACNNNNNNTAC	2 cut(s)	267, 299
PsuI	RGATCY	1 cut(s)	457
RsaI	GTAC	2 cut(s)	569, 735
RsaNI	GTAC	2 cut(s)	568, 734
RseI	CAYNNNNRTG	2 cut(s)	266, 402
SaqAI	TTAA	5 cut(s)	105, 249, 530, 728, 890
Sau3AI	GATC	7 cut(s)	208, 457, 648, 672, 741, 778, 1007
ScrFI	CCNGG	3 cut(s)	387, 573, 612
SduI	GDGCHC	2 cut(s)	302, 1057
SfaNI	GCATC	1 cut(s)	619
SfcI	CTRYAG	1 cut(s)	1084
SmiMI	CAYNNNNRTG	2 cut(s)	266, 402
Sse9I	AATT	5 cut(s)	52, 89, 246, 449, 962
SsiI	CCGC	2 cut(s)	109, 1005
SspMI	CTAG	1 cut(s)	78
StyD4I	CCNGG	3 cut(s)	385, 571, 610
StyI	CCWWGG	4 cut(s)	77, 517, 686, 807
TaaI	ACNGT	3 cut(s)	602, 670, 733
TaiI	ACGT	1 cut(s)	712
TaqI	TCGA	1 cut(s)	477
TaqII	GACCGA	1 cut(s)	1161
TasI	AATT	5 cut(s)	52, 89, 246, 449, 962
TfiI	GAWTC	2 cut(s)	73, 317
Tru1I	TTAA	5 cut(s)	105, 249, 530, 728, 890
Tru9I	TTAA	5 cut(s)	105, 249, 530, 728, 890
TscAI	CASTG	1 cut(s)	319
TseFI	GTSAC	1 cut(s)	310
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	4 cut(s)	227, 288, 971, 1080
TspRI	CASTG	1 cut(s)	319
Van91I	CCANNNNNTGG	1 cut(s)	687
XapI	RAATTY	2 cut(s)	52, 962
XceI	RCATGY	1 cut(s)	265
XmaJI	CCTAGG	1 cut(s)	77
XmnI	GAANNNNTTC	2 cut(s)	234, 279
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.