Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8491361.1

Orthogroup ID

OG0010399

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2377

Gene Structure 2377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8491361.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1087 bp

ctacaatcgcttgggaaaggacgctgatgaggcagatgtggacgagattattgacatggctaataaagcctctgttgatgatcaacagaaacaagtccaagaaaacattcatcttcaaattaaaagcttctgcatgtctatggatgaacttcttctacctgatgtaaagagcacaaatgaggtcactgaatcacctaaacaatcaaatgctactcctcaacgaagtggacttagtttagctattggcaggaacagaccaggagataaacatcctgatgtgcctgagacaaggccattagaacacgctgatgtatctcaaaaattgaaagatctcattggctacactctcgatatcaaaccttctcagataccccataaggaagcaggccaaggcttatttttaaatggtgaatgtgatgttggtgctgtggtggctgtgtaccctggtgtaatatactccccagcatattaccgttacattcctggatatccaagagttgatgcacagaactcatatctgatcacaaggtatgatggaactgtgatcaatgccaaaccttggggttctgggggtgaaacacgtgatttctgggatgggttaacagtaccagagatcagacctaatatgcaaggagatgggaaaggttcagatcggctcttgaagctcctaagtaagcccttggatggcaggcgactgggaaagagtggcgacattatagagcggaggaaccctttagctttggctcattttgccaaccaccctgcaaagggtgtggagccgaatgtaatgatttgcccttatgacttcccattaaccgaaaaggaaatgagagtttatattccgaatgtagtttttggaaatgcagaagaagtgaagatgaagaaatttgggagcttttggttgaaacttgggagttcaagaaatagcggatcagatgttcctgttttgaagacccttgttatggtagctacaagggcactttgtgatgaagaagtgcttttgaactacaggttgagcaactctaagcgtcggccagagtggtatagtccagtcaatgaggaggaagaccgaagaaggtggagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

361

Amino Acids

40.53

Weight (kDa)

6.16

Isoelectric Point (pI)

47.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08270 AT5G23200
fragaria_vesca	FvH4_4g36990 FvH4_4g36990
malus_domestica	MD13G1004400.v1.1 MD16G1003200.v1.1
prunus_persica	Prupe.1G348200_v2.0.a1 Prupe.1G348200_v2.0.a1 Prupe.1G348200_v2.0.a1
pyrus_communis	pycom13g00380
rosa_chinensis	RchiOBHm_Chr4g0446781
rosa_laevigata	RLG00000005632
rosa_multiflora	Rmu_co8491361.1_g000001 Rmu_sc0001753.1_g000030
rosa_roxburghii	Rroxscaffold_5G00387100
rosa_rugosa	Rorug04G0374500
rosa_samantha	Rh4AG436000 Rh4BG444800 Rh4CG462100 Rh4DG443800
rosa_wichuraiana	Rw4G037270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	559
AccBSI	CCGCTC	1 cut(s)	722
AciI	CCGC	2 cut(s)	722, 928
AclWI	GGATC	1 cut(s)	938
AcoI	YGGCCR	1 cut(s)	1032
AcsI	RAATTY	1 cut(s)	885
AcvI	CACGTG	1 cut(s)	582
AdeI	CACNNNGTG	1 cut(s)	984
AfaI	GTAC	2 cut(s)	441, 607
AfiI	CCNNNNNNNGG	5 cut(s)	559, 684, 767, 768, 962
AflIII	ACRYGT	1 cut(s)	579
AgsI	TTSAA	7 cut(s)	117, 326, 662, 905, 919, 950, 1004
AjnI	CCWGG	3 cut(s)	257, 443, 482
AjuI	GAANNNNNNNTTGG	4 cut(s)	91, 123, 403, 435
AloI	GAACNNNNNNTCC	2 cut(s)	922, 954
AluBI	AGCT	7 cut(s)	127, 240, 665, 738, 895, 969, 1084
AluI	AGCT	7 cut(s)	127, 240, 665, 738, 895, 969, 1084
Alw21I	GWGCWC	1 cut(s)	174
Alw26I	GTCTC	1 cut(s)	279
AlwI	GGATC	1 cut(s)	938
AoxI	GGCC	3 cut(s)	291, 386, 1032
ApoI	RAATTY	1 cut(s)	885
Asp700I	GAANNNNTTC	2 cut(s)	106, 151
AsuHPI	GGTGA	3 cut(s)	184, 420, 585
BaeGI	GKGCMC	1 cut(s)	980
BbrPI	CACGTG	1 cut(s)	582
BbsI	GAAGAC	2 cut(s)	957, 1072
Bbv12I	GWGCWC	1 cut(s)	174
BccI	CCATC	4 cut(s)	528, 588, 630, 678
BciT130I	CCWGG	3 cut(s)	259, 445, 484
BclI	TGATCA	3 cut(s)	80, 520, 544
BcoDI	GTCTC	1 cut(s)	279
BfmI	CTRYAG	1 cut(s)	1007
BglII	AGATCT	1 cut(s)	329
Bme1390I	CCNGG	3 cut(s)	259, 445, 484
BmiI	GGNNCC	2 cut(s)	729, 778
BmrFI	CCNGG	3 cut(s)	259, 445, 484
BmrI	ACTGGG	1 cut(s)	705
BmsI	GCATC	1 cut(s)	491
BmuI	ACTGGG	1 cut(s)	705
BpiI	GAAGAC	2 cut(s)	957, 1072
BsaAI	YACGTR	1 cut(s)	582
BsaBI	GATNNNNATC	1 cut(s)	268
BsaJI	CCNNGG	4 cut(s)	389, 443, 558, 679
Bsc4I	CCNNNNNNNGG	5 cut(s)	559, 684, 767, 768, 962
Bse1I	ACTGG	2 cut(s)	700, 1050
Bse8I	GATNNNNATC	1 cut(s)	268
BseBI	CCWGG	3 cut(s)	259, 445, 484
BseDI	CCNNGG	4 cut(s)	389, 443, 558, 679
BseGI	GGATG	4 cut(s)	149, 269, 599, 689
BseJI	GATNNNNATC	1 cut(s)	268
BseLI	CCNNNNNNNGG	5 cut(s)	559, 684, 767, 768, 962
BseMII	CTCAG	2 cut(s)	274, 378
BseNI	ACTGG	2 cut(s)	700, 1050
BseRI	GAGGAG	2 cut(s)	205, 1074
BseSI	GKGCMC	1 cut(s)	980
BseYI	CCCAGC	1 cut(s)	461
BshFI	GGCC	3 cut(s)	293, 388, 1034
BsiHKAI	GWGCWC	1 cut(s)	174
BslI	CCNNNNNNNGG	5 cut(s)	559, 684, 767, 768, 962
BsmAI	GTCTC	1 cut(s)	279
BsnI	GGCC	3 cut(s)	293, 388, 1034
Bsp1286I	GDGCHC	2 cut(s)	174, 980
Bsp143I	GATC	7 cut(s)	80, 329, 520, 544, 613, 650, 930
BspACI	CCGC	2 cut(s)	722, 928
BspANI	GGCC	3 cut(s)	293, 388, 1034
BspCNI	CTCAG	2 cut(s)	275, 377
BspLI	GGNNCC	2 cut(s)	729, 778
BspPI	GGATC	1 cut(s)	938
BsrBI	CCGCTC	1 cut(s)	722
BsrI	ACTGG	2 cut(s)	700, 1050
BssECI	CCNNGG	4 cut(s)	389, 443, 558, 679
BssMI	GATC	7 cut(s)	80, 329, 520, 544, 613, 650, 930
BssT1I	CCWWGG	3 cut(s)	389, 558, 679
Bst2UI	CCWGG	3 cut(s)	259, 445, 484
Bst4CI	ACNGT	3 cut(s)	474, 542, 605
BstBAI	YACGTR	1 cut(s)	582
BstC8I	GCNNGC	2 cut(s)	386, 690
BstDEI	CTNAG	5 cut(s)	231, 283, 364, 669, 1024
BstF5I	GGATG	4 cut(s)	149, 269, 599, 689
BstKTI	GATC	7 cut(s)	83, 332, 523, 547, 616, 653, 933
BstMAI	GTCTC	1 cut(s)	279
BstMBI	GATC	7 cut(s)	80, 329, 520, 544, 613, 650, 930
BstMWI	GCNNNNNNNGC	6 cut(s)	30, 66, 432, 662, 750, 975
BstNI	CCWGG	3 cut(s)	259, 445, 484
BstNSI	RCATGY	1 cut(s)	137
BstSCI	CCNGG	3 cut(s)	257, 443, 482
BstSFI	CTRYAG	1 cut(s)	1007
BstSLI	GKGCMC	1 cut(s)	980
BstV2I	GAAGAC	2 cut(s)	957, 1072
BstX2I	RGATCY	1 cut(s)	329
BstYI	RGATCY	1 cut(s)	329
BsuRI	GGCC	3 cut(s)	293, 388, 1034
BtsCI	GGATG	4 cut(s)	149, 269, 599, 689
BtsIMutI	CAGTG	1 cut(s)	184
Cac8I	GCNNGC	2 cut(s)	386, 690
CseI	GACGC	2 cut(s)	30, 1017
Csp6I	GTAC	2 cut(s)	440, 606
CspCI	CAANNNNNGTGG	2 cut(s)	754, 789
CviAII	CATG	2 cut(s)	56, 134
CviQI	GTAC	2 cut(s)	440, 606
DdeI	CTNAG	5 cut(s)	231, 283, 364, 669, 1024
DpnI	GATC	7 cut(s)	82, 331, 522, 546, 615, 652, 932
DpnII	GATC	7 cut(s)	80, 329, 520, 544, 613, 650, 930
DraI	TTTAAA	1 cut(s)	403
DraIII	CACNNNGTG	1 cut(s)	984
EaeI	YGGCCR	1 cut(s)	1032
Eco130I	CCWWGG	3 cut(s)	389, 558, 679
Eco32I	GATATC	2 cut(s)	353, 489
Eco72I	CACGTG	1 cut(s)	582
EcoRII	CCWGG	3 cut(s)	257, 443, 482
EcoRV	GATATC	2 cut(s)	353, 489
EcoT14I	CCWWGG	3 cut(s)	389, 558, 679
ErhI	CCWWGG	3 cut(s)	389, 558, 679
FaeI	CATG	2 cut(s)	59, 137
FalI	AAGNNNNNCTT	2 cut(s)	982, 1014
FatI	CATG	2 cut(s)	55, 133
FbaI	TGATCA	3 cut(s)	80, 520, 544
FokI	GGATG	4 cut(s)	156, 256, 606, 696
GsaI	CCCAGC	1 cut(s)	465
HaeIII	GGCC	3 cut(s)	293, 388, 1034
HgaI	GACGC	2 cut(s)	30, 1017
Hin1II	CATG	2 cut(s)	59, 137
HincII	GTYRAC	1 cut(s)	601
HindII	GTYRAC	1 cut(s)	601
HindIII	AAGCTT	1 cut(s)	125
HinfI	GANTC	1 cut(s)	189
HpaI	GTTAAC	1 cut(s)	601
HphI	GGTGA	3 cut(s)	184, 420, 585
Hpy166II	GTNNAC	4 cut(s)	41, 228, 440, 601
Hpy188I	TCNGA	6 cut(s)	367, 520, 618, 650, 844, 935
Hpy188III	TCNNGA	4 cut(s)	273, 348, 659, 919
Hpy8I	GTNNAC	4 cut(s)	41, 228, 440, 601
Hpy99I	CGWCG	1 cut(s)	1033
HpyAV	CCTTC	2 cut(s)	370, 1069
HpyCH4III	ACNGT	3 cut(s)	474, 542, 605
HpyCH4IV	ACGT	1 cut(s)	581
HpyCH4V	TGCA	5 cut(s)	133, 504, 629, 765, 864
HpyF10VI	GCNNNNNNNGC	6 cut(s)	30, 66, 432, 662, 750, 975
HpyF3I	CTNAG	5 cut(s)	231, 283, 364, 669, 1024
HpySE526I	ACGT	1 cut(s)	581
Hsp92II	CATG	2 cut(s)	59, 137
Ksp22I	TGATCA	3 cut(s)	80, 520, 544
KspAI	GTTAAC	1 cut(s)	601
Kzo9I	GATC	7 cut(s)	80, 329, 520, 544, 613, 650, 930
LmnI	GCTCC	4 cut(s)	670, 776, 892, 1081
LweI	GCATC	1 cut(s)	491
MaeII	ACGT	1 cut(s)	581
MaeIII	GTNAC	2 cut(s)	182, 474
MalI	GATC	7 cut(s)	82, 331, 522, 546, 615, 652, 932
MbiI	CCGCTC	1 cut(s)	722
MboI	GATC	7 cut(s)	80, 329, 520, 544, 613, 650, 930
MboII	GAAGA	9 cut(s)	105, 144, 879, 887, 893, 962, 1002, 1077, 1084
MflI	RGATCY	1 cut(s)	329
MhlI	GDGCHC	2 cut(s)	174, 980
MluCI	AATT	3 cut(s)	118, 321, 885
MnlI	CCTC	7 cut(s)	23, 80, 173, 226, 718, 1052, 1055
MroXI	GAANNNNTTC	2 cut(s)	106, 151
MseI	TTAA	4 cut(s)	121, 402, 600, 813
MslI	CAYNNNNRTG	3 cut(s)	138, 274, 307
MspR9I	CCNGG	3 cut(s)	259, 445, 484
MvaI	CCWGG	3 cut(s)	259, 445, 484
MwoI	GCNNNNNNNGC	6 cut(s)	30, 66, 432, 662, 750, 975
NdeII	GATC	7 cut(s)	80, 329, 520, 544, 613, 650, 930
NlaIII	CATG	2 cut(s)	59, 137
NlaIV	GGNNCC	2 cut(s)	729, 778
NmuCI	GTSAC	1 cut(s)	182
NspI	RCATGY	1 cut(s)	137
PdmI	GAANNNNTTC	2 cut(s)	106, 151
PfeI	GAWTC	1 cut(s)	189
PflMI	CCANNNNNTGG	1 cut(s)	559
PfoI	TCCNGGA	1 cut(s)	482
PmaCI	CACGTG	1 cut(s)	582
PmlI	CACGTG	1 cut(s)	582
Ppu21I	YACGTR	1 cut(s)	582
Psp6I	CCWGG	3 cut(s)	257, 443, 482
PspCI	CACGTG	1 cut(s)	582
PspFI	CCCAGC	1 cut(s)	461
PspGI	CCWGG	3 cut(s)	257, 443, 482
PspN4I	GGNNCC	2 cut(s)	729, 778
PsrI	GAACNNNNNNTAC	2 cut(s)	139, 171
PsuI	RGATCY	1 cut(s)	329
RsaI	GTAC	2 cut(s)	441, 607
RsaNI	GTAC	2 cut(s)	440, 606
RseI	CAYNNNNRTG	3 cut(s)	138, 274, 307
SaqAI	TTAA	4 cut(s)	121, 402, 600, 813
Sau3AI	GATC	7 cut(s)	80, 329, 520, 544, 613, 650, 930
ScrFI	CCNGG	3 cut(s)	259, 445, 484
SduI	GDGCHC	2 cut(s)	174, 980
SfaNI	GCATC	1 cut(s)	491
SfcI	CTRYAG	1 cut(s)	1007
SmiMI	CAYNNNNRTG	3 cut(s)	138, 274, 307
Sse9I	AATT	3 cut(s)	118, 321, 885
SsiI	CCGC	2 cut(s)	722, 928
StyD4I	CCNGG	3 cut(s)	257, 443, 482
StyI	CCWWGG	3 cut(s)	389, 558, 679
TaaI	ACNGT	3 cut(s)	474, 542, 605
TaiI	ACGT	1 cut(s)	584
TaqI	TCGA	1 cut(s)	349
TaqII	GACCGA	1 cut(s)	1084
TasI	AATT	3 cut(s)	118, 321, 885
TfiI	GAWTC	1 cut(s)	189
Tru1I	TTAA	4 cut(s)	121, 402, 600, 813
Tru9I	TTAA	4 cut(s)	121, 402, 600, 813
TscAI	CASTG	1 cut(s)	191
TseFI	GTSAC	1 cut(s)	182
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	4 cut(s)	99, 160, 894, 1003
TspRI	CASTG	1 cut(s)	191
Van91I	CCANNNNNTGG	1 cut(s)	559
XapI	RAATTY	1 cut(s)	885
XceI	RCATGY	1 cut(s)	137
XmnI	GAANNNNTTC	2 cut(s)	106, 151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.