AT5G08410

Ferredoxin-thioredoxin reductase, variable

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011069
Physical Location & Seq
Reverse (-)
2709787 .. 2710598
812 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G08410.2

Sequence Viewer

Length: 555 bp
ATGACTAACAGTTACGCTCTGTCACCGGCGATTATCGCCGCCGTTCGTCCTCCGGCATCTCAAGACTATCTAGTTGCTGCTTCTCTTAGTGGACGCAAATCGATCAACTCTTCATCTTCGTCCATTTTCGTACCTATCTCATTATCTACTTCCTACGGTCGAAGCAAATGCGCCTTCTCAATCTCGCGGAAGAATCCAAAATCGACGATTCGTTGCGATATTGCTGTGAAATCGGCGGCTTCTGTAGACGCGGACGCTGATCTATCGTCATCTACGTCGTTGGAGACGGAGGAAGACGAGAAAGCGAAGGAGAAGATTGGAGCTAGGGTTAGGGTTACGGTTCCGTTGAAAGTTTACCATGTGGTTCGTGTACCGGAGGTTGAATTGATGGGAATGGAAGGTTTTATCAAAGATTACGTCGTTCTTTGGAAAGGAAAGAAAATCTCAGCTAATCTGCCGTTTAAGGTACAGTTCGTGAAAGAGATCGAAGGTCGTGGTCCTGTCAAATTCTTCACGCATCTTAAGGAAGACGAGTTCGAGTTAATTGATCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FeThRed_A

Protein Analysis

184

Amino Acids

20.15

Weight (kDa)

9.0

Isoelectric Point (pI)

37.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FeThRed_A PF02941 126 - 198 1.2e-24 Ferredoxin thioredoxin reductase variable alpha chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011069)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08410 AT5G08410 AT5G23440
fragaria_vesca FvH4_4g37381 FvH4_4g37381
malus_domestica MD10G1109200.v1.1 MD13G1000200.v1.1 MD16G1005600.v1.1
prunus_persica Prupe.1G352600_v2.0.a1
pyrus_communis pycom13g00020 pycom2749g00070
rosa_chinensis RchiOBHm_Chr4g0447301
rosa_laevigata RLG00000005588
rosa_multiflora Rmu_ssc0000396.1_g000007
rosa_roxburghii Rroxscaffold_5G00387690
rosa_rugosa Rorug04G0379800 Rorug04G0379800
rosa_samantha Rh4BG450100 Rh4DG448500
rosa_wichuraiana Rw4G037740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 246
AccII CGCG 2 cut(s) 187, 251
AciI CCGC 4 cut(s) 39, 187, 236, 251
AclWI GGATC 1 cut(s) 542
AcsI RAATTY 1 cut(s) 506
AfaI GTAC 3 cut(s) 132, 372, 468
AflII CTTAAG 1 cut(s) 521
AgsI TTSAA 2 cut(s) 349, 383
AloI GAACNNNNNNTCC 2 cut(s) 518, 550
AluBI AGCT 2 cut(s) 323, 449
AluI AGCT 2 cut(s) 323, 449
Alw26I GTCTC 1 cut(s) 278
AlwI GGATC 1 cut(s) 542
ApeKI GCWGC 1 cut(s) 77
ApoI RAATTY 1 cut(s) 506
ArsI GACNNNNNNTTYG 2 cut(s) 402, 434
AspLEI GCGC 1 cut(s) 173
AspS9I GGNCC 1 cut(s) 497
AsuHPI GGTGA 1 cut(s) 15
AvaII GGWCC 1 cut(s) 497
BbsI GAAGAC 2 cut(s) 300, 534
BbvI GCAGC 1 cut(s) 64
BccI CCATC 1 cut(s) 382
BceAI ACGGC 2 cut(s) 26, 442
BcgI CGANNNNNNTGC 2 cut(s) 150, 184
BcoDI GTCTC 1 cut(s) 278
BfaI CTAG 2 cut(s) 71, 324
BfmI CTRYAG 1 cut(s) 243
BfrI CTTAAG 1 cut(s) 521
BisI GCNGC 3 cut(s) 39, 78, 237
BlsI GCNGC 3 cut(s) 40, 79, 238
Bme18I GGWCC 1 cut(s) 497
BmgT120I GGNCC 1 cut(s) 497
BmiI GGNNCC 1 cut(s) 342
BmsI GCATC 2 cut(s) 65, 526
BpiI GAAGAC 2 cut(s) 300, 534
BpuEI CTTGAG 1 cut(s) 45
Bsa29I ATCGAT 1 cut(s) 101
BsaWI WCCGGW 1 cut(s) 373
BsaXI ACNNNNNCTCC 2 cut(s) 312, 342
Bse118I RCCGGY 1 cut(s) 25
BseCI ATCGAT 1 cut(s) 101
BseMII CTCAG 1 cut(s) 459
BseXI GCAGC 1 cut(s) 64
Bsh1236I CGCG 2 cut(s) 187, 251
Bsh1285I CGRYCG 1 cut(s) 160
BshVI ATCGAT 1 cut(s) 101
BsiEI CGRYCG 1 cut(s) 160
BsiSI CCGG 3 cut(s) 26, 53, 374
BsmAI GTCTC 1 cut(s) 278
BsmBI CGTCTC 1 cut(s) 278
Bsp143I GATC 4 cut(s) 102, 259, 483, 547
BspACI CCGC 4 cut(s) 39, 187, 236, 251
BspCNI CTCAG 1 cut(s) 458
BspDI ATCGAT 1 cut(s) 101
BspFNI CGCG 2 cut(s) 187, 251
BspLI GGNNCC 1 cut(s) 342
BspPI GGATC 1 cut(s) 542
BspTI CTTAAG 1 cut(s) 521
BsrFI RCCGGY 1 cut(s) 25
BssAI RCCGGY 1 cut(s) 25
BssMI GATC 4 cut(s) 102, 259, 483, 547
Bst4CI ACNGT 4 cut(s) 11, 158, 340, 471
Bst6I CTCTTC 1 cut(s) 115
BstAFI CTTAAG 1 cut(s) 521
BstDEI CTNAG 2 cut(s) 86, 445
BstFNI CGCG 2 cut(s) 187, 251
BstHHI GCGC 1 cut(s) 173
BstKTI GATC 4 cut(s) 105, 262, 486, 550
BstMAI GTCTC 1 cut(s) 278
BstMBI GATC 4 cut(s) 102, 259, 483, 547
BstMCI CGRYCG 1 cut(s) 160
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstSFI CTRYAG 1 cut(s) 243
BstUI CGCG 2 cut(s) 187, 251
BstV1I GCAGC 1 cut(s) 64
BstV2I GAAGAC 2 cut(s) 300, 534
Bsu15I ATCGAT 1 cut(s) 101
BsuTUI ATCGAT 1 cut(s) 101
CfoI GCGC 1 cut(s) 173
Cfr10I RCCGGY 1 cut(s) 25
Cfr13I GGNCC 1 cut(s) 497
ClaI ATCGAT 1 cut(s) 101
CseI GACGC 3 cut(s) 102, 257, 263
Csp6I GTAC 3 cut(s) 131, 371, 467
CviAII CATG 1 cut(s) 359
CviJI RGCY 3 cut(s) 239, 323, 449
CviKI_1 RGCY 3 cut(s) 239, 323, 449
CviQI GTAC 3 cut(s) 131, 371, 467
DdeI CTNAG 2 cut(s) 86, 445
DpnI GATC 4 cut(s) 104, 261, 485, 549
DpnII GATC 4 cut(s) 102, 259, 483, 547
Eam1104I CTCTTC 1 cut(s) 115
EarI CTCTTC 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 497
Esp3I CGTCTC 1 cut(s) 278
FaeI CATG 1 cut(s) 362
FaiI YATR 1 cut(s) 360
FatI CATG 1 cut(s) 358
FblI GTMKAC 1 cut(s) 246
Fnu4HI GCNGC 3 cut(s) 39, 78, 237
Fsp4HI GCNGC 3 cut(s) 39, 78, 237
FspBI CTAG 2 cut(s) 71, 324
GlaI GCGC 1 cut(s) 172
GluI GCNGC 3 cut(s) 39, 78, 237
HapII CCGG 3 cut(s) 26, 53, 374
HgaI GACGC 3 cut(s) 102, 257, 263
HhaI GCGC 1 cut(s) 173
Hin1II CATG 1 cut(s) 362
Hin6I GCGC 1 cut(s) 171
HinP1I GCGC 1 cut(s) 171
HinfI GANTC 2 cut(s) 193, 208
HpaII CCGG 3 cut(s) 26, 53, 374
HphI GGTGA 1 cut(s) 15
Hpy166II GTNNAC 4 cut(s) 92, 247, 355, 371
Hpy188III TCNNGA 2 cut(s) 62, 475
Hpy8I GTNNAC 4 cut(s) 92, 247, 355, 371
Hpy99I CGWCG 3 cut(s) 208, 280, 422
HpyAV CCTTC 4 cut(s) 184, 301, 392, 482
HpyCH4III ACNGT 4 cut(s) 11, 158, 340, 471
HpyCH4IV ACGT 2 cut(s) 275, 417
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 2 cut(s) 86, 445
HpySE526I ACGT 2 cut(s) 275, 417
Hsp92II CATG 1 cut(s) 362
HspAI GCGC 1 cut(s) 171
Kzo9I GATC 4 cut(s) 102, 259, 483, 547
LmnI GCTCC 1 cut(s) 320
LpnPI CCDG 4 cut(s) 39, 66, 387, 513
Lsp1109I GCAGC 1 cut(s) 64
LweI GCATC 2 cut(s) 65, 526
MaeI CTAG 2 cut(s) 71, 324
MaeII ACGT 2 cut(s) 275, 417
MaeIII GTNAC 3 cut(s) 11, 21, 334
MalI GATC 4 cut(s) 104, 261, 485, 549
MboI GATC 4 cut(s) 102, 259, 483, 547
MboII GAAGA 7 cut(s) 102, 108, 202, 305, 325, 502, 539
MluCI AATT 3 cut(s) 383, 506, 543
MmeI TCCRAC 1 cut(s) 261
MnlI CCTC 3 cut(s) 60, 283, 370
MseI TTAA 3 cut(s) 462, 522, 542
MspCI CTTAAG 1 cut(s) 521
MspI CCGG 3 cut(s) 26, 53, 374
MvnI CGCG 2 cut(s) 187, 251
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeII GATC 4 cut(s) 102, 259, 483, 547
NlaIII CATG 1 cut(s) 362
NlaIV GGNNCC 1 cut(s) 342
NmuCI GTSAC 1 cut(s) 21
PcsI WCGNNNNNNNCGW 1 cut(s) 272
PfeI GAWTC 2 cut(s) 193, 208
PkrI GCNGC 3 cut(s) 40, 79, 238
PspN4I GGNNCC 1 cut(s) 342
PspPI GGNCC 1 cut(s) 497
RsaI GTAC 3 cut(s) 132, 372, 468
RsaNI GTAC 3 cut(s) 131, 371, 467
SaqAI TTAA 3 cut(s) 462, 522, 542
SatI GCNGC 3 cut(s) 39, 78, 237
Sau3AI GATC 4 cut(s) 102, 259, 483, 547
Sau96I GGNCC 1 cut(s) 497
SetI ASST 9 cut(s) 136, 278, 325, 381, 403, 420, 451, 468, 493
SfaNI GCATC 2 cut(s) 65, 526
SfcI CTRYAG 1 cut(s) 243
SgrAI CRCCGGYG 1 cut(s) 25
SinI GGWCC 1 cut(s) 497
SmlI CTYRAG 2 cut(s) 60, 521
SmoI CTYRAG 2 cut(s) 60, 521
Sse9I AATT 3 cut(s) 383, 506, 543
SsiI CCGC 4 cut(s) 39, 187, 236, 251
SspMI CTAG 2 cut(s) 71, 324
TaaI ACNGT 4 cut(s) 11, 158, 340, 471
TaiI ACGT 2 cut(s) 278, 420
TaqI TCGA 5 cut(s) 101, 160, 203, 486, 537
TasI AATT 3 cut(s) 383, 506, 543
TauI GCSGC 2 cut(s) 41, 239
TfiI GAWTC 2 cut(s) 193, 208
Tru1I TTAA 3 cut(s) 462, 522, 542
Tru9I TTAA 3 cut(s) 462, 522, 542
TseFI GTSAC 1 cut(s) 21
TseI GCWGC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 21
TspDTI ATGAA 1 cut(s) 102
TspGWI ACGGA 3 cut(s) 302, 333, 540
Vha464I CTTAAG 1 cut(s) 521
VpaK11BI GGWCC 1 cut(s) 497
XapI RAATTY 1 cut(s) 506
XmiI GTMKAC 1 cut(s) 246
XspI CTAG 2 cut(s) 71, 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.