Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0011069

Physical Location & Seq

Genomic Coordinates Forward (+)

55081007 .. 55085197

Gene Structure 4191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0379800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGGAGGTTAGCATGAGCTTTTCACATGACATGGATGATGAATATGAGAAACTTTGCAGGAGAATGAACCCACCAAGGGTTGTAATTGATAATGAAGCCTGCAAGAATGCCACGGTGATAAGGGTTGATAGTGCTAACAAACTTGGAATACTTCTAGAAGTTGTGCAAATACTCACTGATCTTAACCTTATTGTAACCAAAGCGTACATATCTTCGGATGGTGGCTGGTTCATGGATGTTTTTAATGTCACTGATCAAGATGGAAACAAGGTTACAGATGAAGGGGTTTTGGACTATATACGAAAGTCTCTTGGCCCTGAGTCTTGCTTTGCATCTTCCATGAGATCTGTTGGTGTTATACAATCAATGGACCATACTACACTTGAGCTAAGCGGAACCGACAGACCGGGATTGCTATCTGAAGTGAGCCGTGTGCTCGCCATTCTTAAATGCAATGTAGTGGGTGCGCAAGTGTGGACGCACAACACAAGGGCTGCATCTGTGATGCACATTACCGATGAGGAGACAGGGTTGGCTATCACTGATCCCGAGAGGTTAGCTAGTATTAAGAAATCAGTATGCAATGTACTTAAGGGCAGCATCAAATCTAAGGGGTCTAGGACTGTTGTCTCTCATACGGGCACACACCCTGAAAGAAGGCTACACCAGATGATGTTTGCAGATAGGGATTATGACCGAGTTAAAGATGAGAGTGTCTTGGATGACAAGCAAAGACCAGATGTGAATGTTGTTAATTGGTATGACAAGGACTACTCAGTGGTTACTATTCGGAGTAAAGATAGGCCAAAGCTTCTCTTCGATACAGTTTGCACTTTGACAGACATGCAGTATGTGGTTTATCATGCAAATATTGATGCTGAGGGGCCTGAAGCTTATCAGGAATACTATATCAGGCATATAGATGGATCTCCTGTGAAATCAGATGCAGAGAGACAGAGAGTGATACAATGCCTTGAAGCAGCTATTGAGAGAAGAGTATCTGAGGGTTTGAAGCTAGAACTCTGTACTACAGATAGAGTTGGGCTGCTCTCTGATGTCACCCGAATTTTTCGAGAGAATAGCCTTACTGTAACCAGAGCAGAAGTGACAACCAAAGCAGGCAAAGCTGTTAATACATTCTATGTTCGTGAGGCATCAGGCAATCCTGTTGACTCCAAAACCATAGAGTCGATTCGTCAAGAAATCGGGCAGACGATACTTAAAGTGAAAGGCACTCCCGAAGACTTCAATCCTGGTTCTCAGGAATCACCAACCAGGTTCCTCTTTGGTGGTCTGTTCAAGTCAAGATCTTTTGTGAATTTTAAACTGATTAGGTCTTATTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006464 GO:0006629 GO:0006631 GO:0006633 GO:0006732 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009106 GO:0009107 GO:0009108 GO:0009249 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016053 GO:0016740 GO:0016782 GO:0016783 GO:0016992 GO:0018065 GO:0018130 GO:0018193 GO:0018205 GO:0019538 GO:0019752 GO:0032787 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0051186 GO:0051188 GO:0051604 GO:0070283 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00785 ko01100 map00785 map01100

Pfam Domains

Protein Families

LIAS_N Radical_SAM

Protein Analysis

448

Amino Acids

50.3

Weight (kDa)

5.94

Isoelectric Point (pI)

40.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACT	PF01842	38 - 90	2.3e-07	ACT domain
ACT	PF01842	126 - 176	2.9e-08	ACT domain
ACT	PF01842	343 - 401	2.7e-06	ACT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08410 AT5G08410 AT5G23440
fragaria_vesca	FvH4_4g37381 FvH4_4g37381
malus_domestica	MD10G1109200.v1.1 MD13G1000200.v1.1 MD16G1005600.v1.1
prunus_persica	Prupe.1G352600_v2.0.a1
pyrus_communis	pycom13g00020 pycom2749g00070
rosa_chinensis	RchiOBHm_Chr4g0447301
rosa_laevigata	RLG00000005588
rosa_multiflora	Rmu_ssc0000396.1_g000007
rosa_roxburghii	Rroxscaffold_5G00387690
rosa_rugosa	Rorug04G0379800 Rorug04G0379800
rosa_samantha	Rh4BG450100 Rh4DG448500
rosa_wichuraiana	Rw4G037740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	468
AciI	CCGC	1 cut(s)	393
AclWI	GGATC	2 cut(s)	539, 934
AcsI	RAATTY	2 cut(s)	1065, 1318
AcuI	CTGAAG	2 cut(s)	441, 909
AfaI	GTAC	3 cut(s)	206, 588, 1027
AfiI	CCNNNNNNNGG	1 cut(s)	76
AflII	CTTAAG	1 cut(s)	590
AgsI	TTSAA	4 cut(s)	977, 1012, 1249, 1300
AjnI	CCWGG	2 cut(s)	1252, 1274
AluBI	AGCT	8 cut(s)	18, 388, 560, 811, 893, 983, 1015, 1127
AluI	AGCT	8 cut(s)	18, 388, 560, 811, 893, 983, 1015, 1127
Alw21I	GWGCWC	1 cut(s)	438
Alw26I	GTCTC	4 cut(s)	312, 518, 634, 946
AlwI	GGATC	2 cut(s)	539, 934
Ama87I	CYCGRG	1 cut(s)	548
AoxI	GGCC	3 cut(s)	313, 803, 884
ApeKI	GCWGC	4 cut(s)	494, 597, 980, 1045
ApoI	RAATTY	2 cut(s)	1065, 1318
AspLEI	GCGC	1 cut(s)	469
AspS9I	GGNCC	3 cut(s)	314, 370, 884
AsuC2I	CCSGG	1 cut(s)	408
AsuHPI	GGTGA	3 cut(s)	127, 1051, 1260
AvaI	CYCGRG	1 cut(s)	548
AvaII	GGWCC	1 cut(s)	370
BaeGI	GKGCMC	1 cut(s)	644
BbsI	GAAGAC	1 cut(s)	1248
Bbv12I	GWGCWC	1 cut(s)	438
BbvCI	CCTCAGC	1 cut(s)	879
BbvI	GCAGC	4 cut(s)	481, 609, 992, 1032
BccI	CCATC	3 cut(s)	212, 254, 917
BceAI	ACGGC	1 cut(s)	414
BciT130I	CCWGG	2 cut(s)	1254, 1276
BclI	TGATCA	1 cut(s)	253
BcnI	CCSGG	1 cut(s)	408
BcoDI	GTCTC	4 cut(s)	312, 518, 634, 946
BfaI	CTAG	4 cut(s)	155, 561, 618, 1016
BfmI	CTRYAG	1 cut(s)	1029
BfrI	CTTAAG	1 cut(s)	590
BglII	AGATCT	2 cut(s)	344, 1307
BisI	GCNGC	4 cut(s)	495, 598, 981, 1046
BlpI	GCTNAGC	1 cut(s)	389
BlsI	GCNGC	4 cut(s)	496, 599, 982, 1047
Bme1390I	CCNGG	3 cut(s)	408, 1254, 1276
Bme18I	GGWCC	1 cut(s)	370
BmeT110I	CYCGRG	1 cut(s)	548
BmgT120I	GGNCC	3 cut(s)	314, 370, 884
BmiI	GGNNCC	3 cut(s)	397, 885, 1280
BmrFI	CCNGG	3 cut(s)	408, 1254, 1276
BmsI	GCATC	7 cut(s)	341, 495, 506, 609, 865, 934, 1163
BoxI	GACNNNNGTC	1 cut(s)	626
BpiI	GAAGAC	1 cut(s)	1248
Bpu10I	CCTNAGC	1 cut(s)	879
Bpu1102I	GCTNAGC	1 cut(s)	389
BpuEI	CTTGAG	1 cut(s)	404
BpuMI	CCSGG	1 cut(s)	408
BsaBI	GATNNNNATC	1 cut(s)	415
BsaJI	CCNNGG	2 cut(s)	74, 111
BsaXI	ACNNNNNCTCC	2 cut(s)	515, 545
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse3DI	GCAATG	2 cut(s)	460, 589
Bse8I	GATNNNNATC	1 cut(s)	415
BseBI	CCWGG	2 cut(s)	1254, 1276
BseDI	CCNNGG	2 cut(s)	74, 111
BseGI	GGATG	4 cut(s)	40, 223, 241, 727
BseJI	GATNNNNATC	1 cut(s)	415
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMI	GCAATG	2 cut(s)	460, 589
BseMII	CTCAG	5 cut(s)	309, 789, 870, 993, 1274
BseRI	GAGGAG	1 cut(s)	536
BseSI	GKGCMC	1 cut(s)	644
BseXI	GCAGC	4 cut(s)	481, 609, 992, 1032
BshFI	GGCC	3 cut(s)	315, 805, 886
BsiHKAI	GWGCWC	1 cut(s)	438
BsiHKCI	CYCGRG	1 cut(s)	548
BsiSI	CCGG	1 cut(s)	407
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	4 cut(s)	312, 518, 634, 946
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	3 cut(s)	315, 805, 886
BsoBI	CYCGRG	1 cut(s)	548
Bsp1286I	GDGCHC	2 cut(s)	438, 644
Bsp143I	GATC	6 cut(s)	178, 253, 344, 544, 926, 1307
Bsp1720I	GCTNAGC	1 cut(s)	389
BspACI	CCGC	1 cut(s)	393
BspANI	GGCC	3 cut(s)	315, 805, 886
BspCNI	CTCAG	5 cut(s)	310, 788, 871, 994, 1273
BspLI	GGNNCC	3 cut(s)	397, 885, 1280
BspPI	GGATC	2 cut(s)	539, 934
BspTI	CTTAAG	1 cut(s)	590
BsrDI	GCAATG	2 cut(s)	460, 589
BssECI	CCNNGG	2 cut(s)	74, 111
BssMI	GATC	6 cut(s)	178, 253, 344, 544, 926, 1307
BssT1I	CCWWGG	1 cut(s)	74
Bst2UI	CCWGG	2 cut(s)	1254, 1276
Bst4CI	ACNGT	4 cut(s)	115, 625, 826, 1090
Bst6I	CTCTTC	2 cut(s)	821, 988
BstAFI	CTTAAG	1 cut(s)	590
BstC8I	GCNNGC	3 cut(s)	100, 438, 1120
BstDEI	CTNAG	7 cut(s)	318, 389, 609, 775, 879, 1002, 1260
BstDSI	CCRYGG	1 cut(s)	111
BstF5I	GGATG	4 cut(s)	40, 223, 241, 727
BstHHI	GCGC	1 cut(s)	469
BstKTI	GATC	6 cut(s)	181, 256, 347, 547, 929, 1310
BstMAI	GTCTC	4 cut(s)	312, 518, 634, 946
BstMBI	GATC	6 cut(s)	178, 253, 344, 544, 926, 1307
BstMWI	GCNNNNNNNGC	1 cut(s)	1124
BstNI	CCWGG	2 cut(s)	1254, 1276
BstNSI	RCATGY	1 cut(s)	847
BstPAI	GACNNNNGTC	1 cut(s)	626
BstSCI	CCNGG	3 cut(s)	406, 1252, 1274
BstSFI	CTRYAG	1 cut(s)	1029
BstSLI	GKGCMC	1 cut(s)	644
BstV1I	GCAGC	4 cut(s)	481, 609, 992, 1032
BstV2I	GAAGAC	1 cut(s)	1248
BstX2I	RGATCY	3 cut(s)	344, 926, 1307
BstYI	RGATCY	3 cut(s)	344, 926, 1307
BsuRI	GGCC	3 cut(s)	315, 805, 886
BtgI	CCRYGG	1 cut(s)	111
BtsCI	GGATG	4 cut(s)	40, 223, 241, 727
BtsIMutI	CAGTG	4 cut(s)	174, 249, 540, 783
Cac8I	GCNNGC	3 cut(s)	100, 438, 1120
CfoI	GCGC	1 cut(s)	469
Cfr13I	GGNCC	3 cut(s)	314, 370, 884
CseI	GACGC	1 cut(s)	487
CsiI	ACCWGGT	1 cut(s)	1274
Csp6I	GTAC	3 cut(s)	205, 587, 1026
CviAII	CATG	7 cut(s)	13, 26, 31, 232, 340, 844, 863
CviQI	GTAC	3 cut(s)	205, 587, 1026
DdeI	CTNAG	7 cut(s)	318, 389, 609, 775, 879, 1002, 1260
DpnI	GATC	6 cut(s)	180, 255, 346, 546, 928, 1309
DpnII	GATC	6 cut(s)	178, 253, 344, 544, 926, 1307
DraI	TTTAAA	1 cut(s)	1324
Eam1104I	CTCTTC	2 cut(s)	821, 988
EarI	CTCTTC	2 cut(s)	821, 988
Eco130I	CCWWGG	1 cut(s)	74
Eco47I	GGWCC	1 cut(s)	370
Eco57I	CTGAAG	2 cut(s)	441, 909
Eco88I	CYCGRG	1 cut(s)	548
EcoO109I	RGGNCCY	1 cut(s)	884
EcoRII	CCWGG	2 cut(s)	1252, 1274
EcoT14I	CCWWGG	1 cut(s)	74
ErhI	CCWWGG	1 cut(s)	74
FaeI	CATG	7 cut(s)	16, 29, 34, 235, 343, 847, 866
FalI	AAGNNNNNCTT	2 cut(s)	800, 832
FatI	CATG	7 cut(s)	12, 25, 30, 231, 339, 843, 862
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	4 cut(s)	495, 598, 981, 1046
FokI	GGATG	4 cut(s)	47, 230, 248, 734
Fsp4HI	GCNGC	4 cut(s)	495, 598, 981, 1046
FspBI	CTAG	4 cut(s)	155, 561, 618, 1016
FspI	TGCGCA	1 cut(s)	468
GlaI	GCGC	1 cut(s)	468
GluI	GCNGC	4 cut(s)	495, 598, 981, 1046
HaeIII	GGCC	3 cut(s)	315, 805, 886
HapII	CCGG	1 cut(s)	407
HgaI	GACGC	1 cut(s)	487
HhaI	GCGC	1 cut(s)	469
Hin1II	CATG	7 cut(s)	16, 29, 34, 235, 343, 847, 866
Hin6I	GCGC	1 cut(s)	467
HinP1I	GCGC	1 cut(s)	467
HincII	GTYRAC	1 cut(s)	1171
HindII	GTYRAC	1 cut(s)	1171
HindIII	AAGCTT	2 cut(s)	809, 891
HinfI	GANTC	5 cut(s)	320, 1172, 1187, 1192, 1265
HpaII	CCGG	1 cut(s)	407
HphI	GGTGA	3 cut(s)	127, 1051, 1260
Hpy166II	GTNNAC	2 cut(s)	477, 1171
Hpy188I	TCNGA	6 cut(s)	217, 421, 792, 943, 1003, 1054
Hpy8I	GTNNAC	2 cut(s)	477, 1171
HpyAV	CCTTC	2 cut(s)	275, 651
HpyCH4III	ACNGT	4 cut(s)	115, 625, 826, 1090
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1124
HpyF3I	CTNAG	7 cut(s)	318, 389, 609, 775, 879, 1002, 1260
Hsp92II	CATG	7 cut(s)	16, 29, 34, 235, 343, 847, 866
HspAI	GCGC	1 cut(s)	467
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	6 cut(s)	178, 253, 344, 544, 926, 1307
Lsp1109I	GCAGC	4 cut(s)	481, 609, 992, 1032
LweI	GCATC	7 cut(s)	341, 495, 506, 609, 865, 934, 1163
MabI	ACCWGGT	1 cut(s)	1274
MaeI	CTAG	4 cut(s)	155, 561, 618, 1016
MaeIII	GTNAC	7 cut(s)	193, 247, 271, 781, 1057, 1090, 1105
MalI	GATC	6 cut(s)	180, 255, 346, 546, 928, 1309
MboI	GATC	6 cut(s)	178, 253, 344, 544, 926, 1307
MboII	GAAGA	5 cut(s)	204, 327, 808, 1005, 1253
MflI	RGATCY	3 cut(s)	344, 926, 1307
MhlI	GDGCHC	2 cut(s)	438, 644
MluCI	AATT	4 cut(s)	84, 754, 1065, 1318
MlyI	GAGTC	3 cut(s)	329, 1166, 1196
MnlI	CCTC	6 cut(s)	514, 546, 874, 997, 1144, 1292
MslI	CAYNNNNRTG	1 cut(s)	921
MspCI	CTTAAG	1 cut(s)	590
MspI	CCGG	1 cut(s)	407
MspR9I	CCNGG	3 cut(s)	408, 1254, 1276
Mva1269I	GAATGC	1 cut(s)	112
MvaI	CCWGG	2 cut(s)	1254, 1276
MwoI	GCNNNNNNNGC	1 cut(s)	1124
NciI	CCSGG	1 cut(s)	408
NdeII	GATC	6 cut(s)	178, 253, 344, 544, 926, 1307
NlaIII	CATG	7 cut(s)	16, 29, 34, 235, 343, 847, 866
NlaIV	GGNNCC	3 cut(s)	397, 885, 1280
NmuCI	GTSAC	3 cut(s)	247, 1057, 1105
NsbI	TGCGCA	1 cut(s)	468
NspI	RCATGY	1 cut(s)	847
PctI	GAATGC	1 cut(s)	112
PfeI	GAWTC	2 cut(s)	1192, 1265
PkrI	GCNGC	4 cut(s)	496, 599, 982, 1047
PleI	GAGTC	3 cut(s)	328, 1166, 1195
PpsI	GAGTC	3 cut(s)	328, 1166, 1195
PshAI	GACNNNNGTC	1 cut(s)	626
Psp6I	CCWGG	2 cut(s)	1252, 1274
PspGI	CCWGG	2 cut(s)	1252, 1274
PspN4I	GGNNCC	3 cut(s)	397, 885, 1280
PspPI	GGNCC	3 cut(s)	314, 370, 884
PsuI	RGATCY	3 cut(s)	344, 926, 1307
RsaI	GTAC	3 cut(s)	206, 588, 1027
RsaNI	GTAC	3 cut(s)	205, 587, 1026
RseI	CAYNNNNRTG	1 cut(s)	921
SatI	GCNGC	4 cut(s)	495, 598, 981, 1046
Sau3AI	GATC	6 cut(s)	178, 253, 344, 544, 926, 1307
Sau96I	GGNCC	3 cut(s)	314, 370, 884
SchI	GAGTC	3 cut(s)	329, 1166, 1196
ScrFI	CCNGG	3 cut(s)	408, 1254, 1276
SduI	GDGCHC	2 cut(s)	438, 644
SexAI	ACCWGGT	1 cut(s)	1274
SfaNI	GCATC	7 cut(s)	341, 495, 506, 609, 865, 934, 1163
SfcI	CTRYAG	1 cut(s)	1029
SinI	GGWCC	1 cut(s)	370
SmiMI	CAYNNNNRTG	1 cut(s)	921
SmlI	CTYRAG	2 cut(s)	383, 590
SmoI	CTYRAG	2 cut(s)	383, 590
Sse9I	AATT	4 cut(s)	84, 754, 1065, 1318
SsiI	CCGC	1 cut(s)	393
SspI	AATATT	1 cut(s)	871
SspMI	CTAG	4 cut(s)	155, 561, 618, 1016
StyD4I	CCNGG	3 cut(s)	406, 1252, 1274
StyI	CCWWGG	1 cut(s)	74
TaaI	ACNGT	4 cut(s)	115, 625, 826, 1090
TaqI	TCGA	3 cut(s)	819, 1072, 1190
TaqII	GACCGA	1 cut(s)	711
TasI	AATT	4 cut(s)	84, 754, 1065, 1318
TatI	WGTACW	2 cut(s)	586, 1025
TfiI	GAWTC	2 cut(s)	1192, 1265
TscAI	CASTG	4 cut(s)	181, 256, 547, 783
TseFI	GTSAC	3 cut(s)	247, 1057, 1105
TseI	GCWGC	4 cut(s)	494, 597, 980, 1045
Tsp45I	GTSAC	3 cut(s)	247, 1057, 1105
TspDTI	ATGAA	5 cut(s)	54, 80, 108, 220, 294
TspRI	CASTG	4 cut(s)	181, 256, 547, 783
Vha464I	CTTAAG	1 cut(s)	590
VpaK11BI	GGWCC	1 cut(s)	370
XapI	RAATTY	2 cut(s)	1065, 1318
XbaI	TCTAGA	1 cut(s)	154
XceI	RCATGY	1 cut(s)	847
XspI	CTAG	4 cut(s)	155, 561, 618, 1016

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.