MD10G1109200.v1.1

Ferredoxin-thioredoxin reductase, variable

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0011069
Physical Location & Seq
Reverse (-)
18016885 .. 18017100
216 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1109200.v1.1.491

Sequence Viewer

Length: 216 bp
ATGAAAGTGCATCTGAAGGTGTACCACGTGCCCAGAGTTTTGGAGGTAGACATTACTGGCATGGAAGGTAAGCTGAAGCAGTACGTTGTGTTGTGGAAAGGAAAACAGATTTCAACCAATCTCCCTTATAAGGTGCAGTTCGTCGTCGACATTCAAGGCCGTGGCGCAGTTAAGTTCTTTGCCCATCTCAAGGAGGACGGGTTTGAATATCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FeThRed_A

Protein Analysis

72

Amino Acids

8.26

Weight (kDa)

9.48

Isoelectric Point (pI)

1.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FeThRed_A PF02941 2 - 66 3.9e-21 Ferredoxin thioredoxin reductase variable alpha chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011069)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08410 AT5G08410 AT5G23440
fragaria_vesca FvH4_4g37381 FvH4_4g37381
malus_domestica MD10G1109200.v1.1 MD13G1000200.v1.1 MD16G1005600.v1.1
prunus_persica Prupe.1G352600_v2.0.a1
pyrus_communis pycom13g00020 pycom2749g00070
rosa_chinensis RchiOBHm_Chr4g0447301
rosa_laevigata RLG00000005588
rosa_multiflora Rmu_ssc0000396.1_g000007
rosa_roxburghii Rroxscaffold_5G00387690
rosa_rugosa Rorug04G0379800 Rorug04G0379800
rosa_samantha Rh4BG450100 Rh4DG448500
rosa_wichuraiana Rw4G037740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 129
AccI GTMKAC 2 cut(s) 48, 147
AcuI CTGAAG 2 cut(s) 35, 95
AcvI CACGTG 1 cut(s) 28
AfaI GTAC 2 cut(s) 23, 83
AfiI CCNNNNNNNGG 2 cut(s) 130, 190
AgsI TTSAA 3 cut(s) 114, 155, 206
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
AoxI GGCC 1 cut(s) 157
AspLEI GCGC 1 cut(s) 167
BaeGI GKGCMC 1 cut(s) 33
BbrPI CACGTG 1 cut(s) 28
BccI CCATC 1 cut(s) 192
BceAI ACGGC 1 cut(s) 144
BmsI GCATC 1 cut(s) 19
BpuEI CTTGAG 1 cut(s) 173
BsaAI YACGTR 1 cut(s) 28
BsaJI CCNNGG 1 cut(s) 160
BsaXI ACNNNNNCTCC 2 cut(s) 185, 215
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 190
Bse1I ACTGG 1 cut(s) 61
BseDI CCNNGG 1 cut(s) 160
BseLI CCNNNNNNNGG 2 cut(s) 130, 190
BseNI ACTGG 1 cut(s) 61
BseSI GKGCMC 1 cut(s) 33
BsgI GTGCAG 1 cut(s) 155
BshFI GGCC 1 cut(s) 159
BslI CCNNNNNNNGG 2 cut(s) 130, 190
BsnI GGCC 1 cut(s) 159
Bsp1286I GDGCHC 1 cut(s) 33
BspANI GGCC 1 cut(s) 159
BsrI ACTGG 1 cut(s) 61
BssECI CCNNGG 1 cut(s) 160
BstBAI YACGTR 1 cut(s) 28
BstDSI CCRYGG 1 cut(s) 160
BstHHI GCGC 1 cut(s) 167
BstSLI GKGCMC 1 cut(s) 33
BstXI CCANNNNNNTGG 1 cut(s) 40
BsuRI GGCC 1 cut(s) 159
BtgI CCRYGG 1 cut(s) 160
CfoI GCGC 1 cut(s) 167
Csp6I GTAC 2 cut(s) 22, 82
CviAII CATG 1 cut(s) 61
CviJI RGCY 2 cut(s) 73, 159
CviKI_1 RGCY 2 cut(s) 73, 159
CviQI GTAC 2 cut(s) 22, 82
Eco57I CTGAAG 2 cut(s) 35, 95
Eco72I CACGTG 1 cut(s) 28
FaeI CATG 1 cut(s) 64
FaiI YATR 2 cut(s) 62, 129
FatI CATG 1 cut(s) 60
FblI GTMKAC 2 cut(s) 48, 147
GlaI GCGC 1 cut(s) 166
HaeIII GGCC 1 cut(s) 159
HhaI GCGC 1 cut(s) 167
Hin1II CATG 1 cut(s) 64
Hin6I GCGC 1 cut(s) 165
HinP1I GCGC 1 cut(s) 165
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
Hpy166II GTNNAC 3 cut(s) 22, 49, 148
Hpy188I TCNGA 1 cut(s) 15
Hpy8I GTNNAC 3 cut(s) 22, 49, 148
Hpy99I CGWCG 2 cut(s) 146, 149
HpyAV CCTTC 2 cut(s) 10, 59
HpyCH4IV ACGT 2 cut(s) 27, 84
HpyCH4V TGCA 2 cut(s) 10, 136
HpySE526I ACGT 2 cut(s) 27, 84
Hsp92II CATG 1 cut(s) 64
HspAI GCGC 1 cut(s) 165
LpnPI CCDG 2 cut(s) 42, 46
LweI GCATC 1 cut(s) 19
MaeII ACGT 2 cut(s) 27, 84
MhlI GDGCHC 1 cut(s) 33
MnlI CCTC 2 cut(s) 37, 187
MseI TTAA 2 cut(s) 171, 214
NlaIII CATG 1 cut(s) 64
PmaCI CACGTG 1 cut(s) 28
PmlI CACGTG 1 cut(s) 28
Ppu21I YACGTR 1 cut(s) 28
PsiI TTATAA 1 cut(s) 129
PspCI CACGTG 1 cut(s) 28
RsaI GTAC 2 cut(s) 23, 83
RsaNI GTAC 2 cut(s) 22, 82
SalI GTCGAC 1 cut(s) 146
SaqAI TTAA 2 cut(s) 171, 214
SduI GDGCHC 1 cut(s) 33
SetI ASST 7 cut(s) 21, 30, 48, 70, 75, 87, 135
SfaNI GCATC 1 cut(s) 19
SgeI CNNG 9 cut(s) 38, 40, 45, 69, 73, 167, 173, 202, 211
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
TaiI ACGT 2 cut(s) 30, 87
TaqI TCGA 1 cut(s) 147
Tru1I TTAA 2 cut(s) 171, 214
Tru9I TTAA 2 cut(s) 171, 214
TspDTI ATGAA 1 cut(s) 17
XmiI GTMKAC 2 cut(s) 48, 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.