Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0011069

Physical Location & Seq

Genomic Coordinates Forward (+)

33888889 .. 33891220

Gene Structure 2332 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g37381.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGATGAGTATAGGAGGAACAGTGGGGTTATTGAGCTCAGCCACAGCCACAGCCACAGCTATAGGCAGAGCAGATGCGGCGGGACAAATGAATTCACGATTGGTTTGTTGCCCGGTTGGGAGTCGGAGTCTCGCACTCGCTCACTACCCAACAACAGCAGCAGGAACCACTCGGAAATCTACAAGGATTTTCTGCGAAGTCGCTGTGGGATCGGACTCGGCATCTCCATCGACATCAGAAGCGGCCATCGGAGCTAGGGTCAAGGTCACGGTGCCTCTTAAGGTGTACCACGTGCCCAGAGTTCCCGAGGTTGACATCACTGGCATGGAAGGTGAACTCAAGCAGTACGTTGGCCTCTGGAAGGGCAAACGTATTTCTGCCAATCTCCCTTACAAAGTACAGTTCTTTGTCGACGTCCCAGGCCGTGGCCCTGTTAAATTCTTCGCGCATCTCAAGGAGGACGAGTTCGAATACCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006464 GO:0006629 GO:0006631 GO:0006633 GO:0006732 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009106 GO:0009107 GO:0009108 GO:0009249 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016053 GO:0016740 GO:0016782 GO:0016783 GO:0016992 GO:0018065 GO:0018130 GO:0018193 GO:0018205 GO:0019538 GO:0019752 GO:0032787 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0051186 GO:0051188 GO:0051604 GO:0070283 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00785 ko01100 map00785 map01100

Pfam Domains

Protein Families

LIAS_N Radical_SAM

Protein Analysis

160

Amino Acids

16.89

Weight (kDa)

9.24

Isoelectric Point (pI)

31.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FeThRed_A	PF02941	83 - 155	7.8e-28	Ferredoxin thioredoxin reductase variable alpha chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08410 AT5G08410 AT5G23440
fragaria_vesca	FvH4_4g37381 FvH4_4g37381
malus_domestica	MD10G1109200.v1.1 MD13G1000200.v1.1 MD16G1005600.v1.1
prunus_persica	Prupe.1G352600_v2.0.a1
pyrus_communis	pycom13g00020 pycom2749g00070
rosa_chinensis	RchiOBHm_Chr4g0447301
rosa_laevigata	RLG00000005588
rosa_multiflora	Rmu_ssc0000396.1_g000007
rosa_roxburghii	Rroxscaffold_5G00387690
rosa_rugosa	Rorug04G0379800 Rorug04G0379800
rosa_samantha	Rh4BG450100 Rh4DG448500
rosa_wichuraiana	Rw4G037740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	417
AccB1I	GGYRCC	1 cut(s)	271
AccB7I	CCANNNNNTGG	1 cut(s)	425
AccI	GTMKAC	1 cut(s)	411
AccII	CGCG	1 cut(s)	446
AciI	CCGC	3 cut(s)	77, 80, 242
AclWI	GGATC	1 cut(s)	217
AcoI	YGGCCR	1 cut(s)	243
AcsI	RAATTY	2 cut(s)	91, 437
AcvI	CACGTG	1 cut(s)	292
AcyI	GRCGYC	1 cut(s)	414
AfaI	GTAC	3 cut(s)	287, 347, 399
AfiI	CCNNNNNNNGG	2 cut(s)	361, 425
AflII	CTTAAG	1 cut(s)	278
AjnI	CCWGG	1 cut(s)	418
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AloI	GAACNNNNNNTCC	1 cut(s)	449
AluBI	AGCT	3 cut(s)	36, 59, 254
AluI	AGCT	3 cut(s)	36, 59, 254
Alw21I	GWGCWC	1 cut(s)	38
Alw26I	GTCTC	1 cut(s)	134
AlwI	GGATC	1 cut(s)	217
Ama87I	CYCGRG	1 cut(s)	305
AoxI	GGCC	4 cut(s)	243, 352, 421, 427
ApeKI	GCWGC	1 cut(s)	158
ApoI	RAATTY	2 cut(s)	91, 437
AspLEI	GCGC	1 cut(s)	448
AspS9I	GGNCC	1 cut(s)	428
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	344
AsuII	TTCGAA	1 cut(s)	468
AvaI	CYCGRG	1 cut(s)	305
BaeGI	GKGCMC	1 cut(s)	297
BanI	GGYRCC	1 cut(s)	271
BanII	GRGCYC	1 cut(s)	38
BbrPI	CACGTG	1 cut(s)	292
Bbv12I	GWGCWC	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	170
BccI	CCATC	2 cut(s)	235, 254
BceAI	ACGGC	1 cut(s)	408
BcgI	CGANNNNNNTGC	2 cut(s)	210, 244
BciT130I	CCWGG	1 cut(s)	420
BcnI	CCSGG	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	134
BfaI	CTAG	1 cut(s)	255
BfmI	CTRYAG	1 cut(s)	60
BfrI	CTTAAG	1 cut(s)	278
BisI	GCNGC	3 cut(s)	78, 159, 243
BlpI	GCTNAGC	1 cut(s)	37
BlsI	GCNGC	3 cut(s)	79, 160, 244
Bme1390I	CCNGG	2 cut(s)	113, 420
BmeT110I	CYCGRG	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	428
BmiI	GGNNCC	2 cut(s)	166, 273
BmrFI	CCNGG	2 cut(s)	113, 420
BmsI	GCATC	3 cut(s)	64, 230, 457
Bpu1102I	GCTNAGC	1 cut(s)	37
Bpu14I	TTCGAA	1 cut(s)	468
BpuEI	CTTGAG	2 cut(s)	323, 437
BpuMI	CCSGG	1 cut(s)	113
BsaAI	YACGTR	1 cut(s)	292
BsaHI	GRCGYC	1 cut(s)	414
BsaJI	CCNNGG	3 cut(s)	306, 418, 424
BsaXI	ACNNNNNCTCC	8 cut(s)	6, 36, 112, 142, 243, 273, 449, 479
Bsc4I	CCNNNNNNNGG	2 cut(s)	361, 425
Bse1I	ACTGG	1 cut(s)	325
BseBI	CCWGG	1 cut(s)	420
BseDI	CCNNGG	3 cut(s)	306, 418, 424
BseLI	CCNNNNNNNGG	2 cut(s)	361, 425
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	1 cut(s)	325
BseSI	GKGCMC	1 cut(s)	297
BseXI	GCAGC	1 cut(s)	170
Bsh1236I	CGCG	1 cut(s)	446
BshFI	GGCC	4 cut(s)	245, 354, 423, 429
BshNI	GGYRCC	1 cut(s)	271
BsiHKAI	GWGCWC	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	305
BsiSI	CCGG	1 cut(s)	113
BslFI	GGGAC	2 cut(s)	96, 401
BslI	CCNNNNNNNGG	2 cut(s)	361, 425
BsmAI	GTCTC	1 cut(s)	134
BsmFI	GGGAC	2 cut(s)	96, 401
BsnI	GGCC	4 cut(s)	245, 354, 423, 429
BsoBI	CYCGRG	1 cut(s)	305
Bsp119I	TTCGAA	1 cut(s)	468
Bsp1286I	GDGCHC	2 cut(s)	38, 297
Bsp143I	GATC	1 cut(s)	209
Bsp1720I	GCTNAGC	1 cut(s)	37
BspACI	CCGC	3 cut(s)	77, 80, 242
BspANI	GGCC	4 cut(s)	245, 354, 423, 429
BspCNI	CTCAG	1 cut(s)	50
BspFNI	CGCG	1 cut(s)	446
BspLI	GGNNCC	2 cut(s)	166, 273
BspPI	GGATC	1 cut(s)	217
BspT104I	TTCGAA	1 cut(s)	468
BspT107I	GGYRCC	1 cut(s)	271
BspTI	CTTAAG	1 cut(s)	278
BsrI	ACTGG	1 cut(s)	325
BssECI	CCNNGG	3 cut(s)	306, 418, 424
BssMI	GATC	1 cut(s)	209
BssNI	GRCGYC	1 cut(s)	414
Bst2UI	CCWGG	1 cut(s)	420
Bst4CI	ACNGT	3 cut(s)	22, 271, 402
BstACI	GRCGYC	1 cut(s)	414
BstAFI	CTTAAG	1 cut(s)	278
BstBAI	YACGTR	1 cut(s)	292
BstBI	TTCGAA	1 cut(s)	468
BstDEI	CTNAG	1 cut(s)	37
BstDSI	CCRYGG	1 cut(s)	424
BstENI	CCTNNNNNAGG	1 cut(s)	359
BstFNI	CGCG	1 cut(s)	446
BstHHI	GCGC	1 cut(s)	448
BstKTI	GATC	1 cut(s)	212
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	1 cut(s)	209
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 251
BstNI	CCWGG	1 cut(s)	420
BstSCI	CCNGG	2 cut(s)	111, 418
BstSFI	CTRYAG	1 cut(s)	60
BstSLI	GKGCMC	1 cut(s)	297
BstUI	CGCG	1 cut(s)	446
BstV1I	GCAGC	1 cut(s)	170
BsuRI	GGCC	4 cut(s)	245, 354, 423, 429
BtgI	CCRYGG	1 cut(s)	424
BtsIMutI	CAGTG	2 cut(s)	27, 318
CfoI	GCGC	1 cut(s)	448
Cfr13I	GGNCC	1 cut(s)	428
Csp6I	GTAC	3 cut(s)	286, 346, 398
CviAII	CATG	1 cut(s)	325
CviQI	GTAC	3 cut(s)	286, 346, 398
DdeI	CTNAG	1 cut(s)	37
DpnI	GATC	1 cut(s)	211
DpnII	GATC	1 cut(s)	209
EaeI	YGGCCR	1 cut(s)	243
Ecl136II	GAGCTC	1 cut(s)	36
Eco24I	GRGCYC	1 cut(s)	38
Eco53kI	GAGCTC	1 cut(s)	36
Eco72I	CACGTG	1 cut(s)	292
Eco88I	CYCGRG	1 cut(s)	305
EcoICRI	GAGCTC	1 cut(s)	36
EcoNI	CCTNNNNNAGG	1 cut(s)	359
EcoRI	GAATTC	1 cut(s)	91
EcoRII	CCWGG	1 cut(s)	418
EcoT38I	GRGCYC	1 cut(s)	38
FaeI	CATG	1 cut(s)	328
FaiI	YATR	3 cut(s)	11, 62, 326
FaqI	GGGAC	2 cut(s)	96, 401
FatI	CATG	1 cut(s)	324
FauI	CCCGC	1 cut(s)	73
FblI	GTMKAC	1 cut(s)	411
Fnu4HI	GCNGC	3 cut(s)	78, 159, 243
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	3 cut(s)	78, 159, 243
FspBI	CTAG	1 cut(s)	255
GlaI	GCGC	1 cut(s)	447
GluI	GCNGC	3 cut(s)	78, 159, 243
HaeIII	GGCC	4 cut(s)	245, 354, 423, 429
HapII	CCGG	1 cut(s)	113
HhaI	GCGC	1 cut(s)	448
Hin1I	GRCGYC	1 cut(s)	414
Hin1II	CATG	1 cut(s)	328
Hin6I	GCGC	1 cut(s)	446
HinP1I	GCGC	1 cut(s)	446
HincII	GTYRAC	2 cut(s)	313, 412
HindII	GTYRAC	2 cut(s)	313, 412
HinfI	GANTC	3 cut(s)	121, 127, 215
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	1 cut(s)	344
Hpy166II	GTNNAC	4 cut(s)	286, 313, 335, 412
Hpy188I	TCNGA	5 cut(s)	126, 174, 214, 238, 251
Hpy188III	TCNNGA	3 cut(s)	96, 305, 358
Hpy8I	GTNNAC	4 cut(s)	286, 313, 335, 412
Hpy99I	CGWCG	1 cut(s)	416
HpyAV	CCTTC	2 cut(s)	323, 355
HpyCH4III	ACNGT	3 cut(s)	22, 271, 402
HpyCH4IV	ACGT	4 cut(s)	291, 348, 370, 414
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 251
HpyF3I	CTNAG	1 cut(s)	37
HpySE526I	ACGT	4 cut(s)	291, 348, 370, 414
Hsp92I	GRCGYC	1 cut(s)	414
Hsp92II	CATG	1 cut(s)	328
HspAI	GCGC	1 cut(s)	446
Kzo9I	GATC	1 cut(s)	209
LmnI	GCTCC	1 cut(s)	251
LpnPI	CCDG	8 cut(s)	126, 147, 306, 310, 343, 405, 432, 444
Lsp1109I	GCAGC	1 cut(s)	170
LweI	GCATC	3 cut(s)	64, 230, 457
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	4 cut(s)	291, 348, 370, 414
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	1 cut(s)	211
MboI	GATC	1 cut(s)	209
MboII	GAAGA	1 cut(s)	433
MhlI	GDGCHC	2 cut(s)	38, 297
MluCI	AATT	2 cut(s)	91, 437
MlyI	GAGTC	3 cut(s)	130, 136, 209
MmeI	TCCRAC	1 cut(s)	104
MnlI	CCTC	5 cut(s)	8, 285, 301, 365, 451
MseI	TTAA	2 cut(s)	279, 435
MslI	CAYNNNNRTG	1 cut(s)	323
MspCI	CTTAAG	1 cut(s)	278
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	2 cut(s)	113, 420
MvaI	CCWGG	1 cut(s)	420
MvnI	CGCG	1 cut(s)	446
MwoI	GCNNNNNNNGC	2 cut(s)	77, 251
NciI	CCSGG	1 cut(s)	113
NdeII	GATC	1 cut(s)	209
NlaIII	CATG	1 cut(s)	328
NlaIV	GGNNCC	2 cut(s)	166, 273
NmeAIII	GCCGAG	1 cut(s)	197
NmuCI	GTSAC	1 cut(s)	265
NspV	TTCGAA	1 cut(s)	468
PflMI	CCANNNNNTGG	1 cut(s)	425
PkrI	GCNGC	3 cut(s)	79, 160, 244
PleI	GAGTC	3 cut(s)	129, 135, 209
PmaCI	CACGTG	1 cut(s)	292
PmlI	CACGTG	1 cut(s)	292
PpsI	GAGTC	3 cut(s)	129, 135, 209
Ppu21I	YACGTR	1 cut(s)	292
Psp124BI	GAGCTC	1 cut(s)	38
Psp6I	CCWGG	1 cut(s)	418
PspCI	CACGTG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	418
PspN4I	GGNNCC	2 cut(s)	166, 273
PspPI	GGNCC	1 cut(s)	428
RsaI	GTAC	3 cut(s)	287, 347, 399
RsaNI	GTAC	3 cut(s)	286, 346, 398
RseI	CAYNNNNRTG	1 cut(s)	323
SacI	GAGCTC	1 cut(s)	38
SalI	GTCGAC	1 cut(s)	410
SaqAI	TTAA	2 cut(s)	279, 435
SatI	GCNGC	3 cut(s)	78, 159, 243
Sau3AI	GATC	1 cut(s)	209
Sau96I	GGNCC	1 cut(s)	428
SchI	GAGTC	3 cut(s)	130, 136, 209
ScrFI	CCNGG	2 cut(s)	113, 420
SduI	GDGCHC	2 cut(s)	38, 297
SfaNI	GCATC	3 cut(s)	64, 230, 457
SfcI	CTRYAG	1 cut(s)	60
SfuI	TTCGAA	1 cut(s)	468
SmiMI	CAYNNNNRTG	1 cut(s)	323
SmlI	CTYRAG	3 cut(s)	278, 338, 452
SmoI	CTYRAG	3 cut(s)	278, 338, 452
Sse9I	AATT	2 cut(s)	91, 437
SsiI	CCGC	3 cut(s)	77, 80, 242
SspMI	CTAG	1 cut(s)	255
SstI	GAGCTC	1 cut(s)	38
StyD4I	CCNGG	2 cut(s)	111, 418
TaaI	ACNGT	3 cut(s)	22, 271, 402
TaiI	ACGT	4 cut(s)	294, 351, 373, 417
TaqI	TCGA	3 cut(s)	230, 411, 468
TasI	AATT	2 cut(s)	91, 437
TatI	WGTACW	1 cut(s)	397
TauI	GCSGC	2 cut(s)	80, 245
Tru1I	TTAA	2 cut(s)	279, 435
Tru9I	TTAA	2 cut(s)	279, 435
TscAI	CASTG	2 cut(s)	27, 325
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	1 cut(s)	158
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	1 cut(s)	104
TspRI	CASTG	2 cut(s)	27, 325
Van91I	CCANNNNNTGG	1 cut(s)	425
Vha464I	CTTAAG	1 cut(s)	278
XagI	CCTNNNNNAGG	1 cut(s)	359
XapI	RAATTY	2 cut(s)	91, 437
XmiI	GTMKAC	1 cut(s)	411
XspI	CTAG	1 cut(s)	255
ZraI	GACGTC	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.