MD16G1005600.v1.1

Ferredoxin-thioredoxin reductase, variable

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0011069
Physical Location & Seq
Reverse (-)
435783 .. 436289
507 bp
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UTR
Exon/CDS
Intron
MD16G1005600.v1.1.491

Sequence Viewer

Length: 507 bp
ATGGGTATAGCAACAGTGGCAGCAGCCGCCGCCTCTTCATCCCTGAATTCATCCCTAAGGGCAGCAGCAGATGCGGGACAGCTGAAATCGTTCTCGTTCTCTTTCCCTTCTTGTTGGGCAGTTTCATTTCCACATCACAAACTCACTCCCACCGCTCTCACCCACTGCCCGTGGAGGAGGAAATTAAGTAGAAGGGTTATTTGCGAGGTTGCTGCCGCCGATGTCTCTCCATCAACATCATCAGATGAACCCGCCGCCGCCGCCTCCTCCAAAATAGGAGCTAGGGTTAGGGTGAAGGTGCCTCTGAAGGTGTACCACGTGCCCAGAGTTCCGGAGGTGGACATTACTGGCATGGAAGGTGAGCTCAAGCAGTACGTTGGGCTGTGGAAGGGCAAGCGGATTTCAGCCAATCTCCCTTATAAGGTGCAGTTCGTCGTCGATGTTCAAGGCCGTGGCGCAGTTAAGTTCTTCGCCCATCTCAAGGAGGATGAGTTCGAATATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FeThRed_A

Protein Analysis

169

Amino Acids

18.23

Weight (kDa)

9.6

Isoelectric Point (pI)

36.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FeThRed_A PF02941 92 - 164 7.3e-28 Ferredoxin thioredoxin reductase variable alpha chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011069)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08410 AT5G08410 AT5G23440
fragaria_vesca FvH4_4g37381 FvH4_4g37381
malus_domestica MD10G1109200.v1.1 MD13G1000200.v1.1 MD16G1005600.v1.1
prunus_persica Prupe.1G352600_v2.0.a1
pyrus_communis pycom13g00020 pycom2749g00070
rosa_chinensis RchiOBHm_Chr4g0447301
rosa_laevigata RLG00000005588
rosa_multiflora Rmu_ssc0000396.1_g000007
rosa_roxburghii Rroxscaffold_5G00387690
rosa_rugosa Rorug04G0379800 Rorug04G0379800
rosa_samantha Rh4BG450100 Rh4DG448500
rosa_wichuraiana Rw4G037740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 420
AccB1I GGYRCC 1 cut(s) 298
AccBSI CCGCTC 1 cut(s) 155
AccIII TCCGGA 1 cut(s) 331
AcsI RAATTY 1 cut(s) 46
AcuI CTGAAG 1 cut(s) 326
AcvI CACGTG 1 cut(s) 319
AfaI GTAC 2 cut(s) 314, 374
AfiI CCNNNNNNNGG 2 cut(s) 421, 481
AgsI TTSAA 1 cut(s) 446
AloI GAACNNNNNNTCC 1 cut(s) 476
AluBI AGCT 3 cut(s) 82, 281, 364
AluI AGCT 3 cut(s) 82, 281, 364
Alw21I GWGCWC 1 cut(s) 366
Alw26I GTCTC 1 cut(s) 229
Aor13HI TCCGGA 1 cut(s) 331
AoxI GGCC 1 cut(s) 448
ApeKI GCWGC 5 cut(s) 20, 23, 62, 65, 212
ApoI RAATTY 1 cut(s) 46
Asp700I GAANNNNTTC 1 cut(s) 89
AspLEI GCGC 1 cut(s) 458
AsuHPI GGTGA 3 cut(s) 151, 304, 371
AsuII TTCGAA 1 cut(s) 495
AxyI CCTNAGG 1 cut(s) 56
BaeGI GKGCMC 1 cut(s) 324
BanI GGYRCC 1 cut(s) 298
BanII GRGCYC 1 cut(s) 366
BbrPI CACGTG 1 cut(s) 319
Bbv12I GWGCWC 1 cut(s) 366
BbvI GCAGC 5 cut(s) 32, 35, 74, 77, 199
BccI CCATC 2 cut(s) 238, 483
BceAI ACGGC 1 cut(s) 435
BcgI CGANNNNNNTGC 2 cut(s) 194, 228
BcoDI GTCTC 1 cut(s) 229
BfaI CTAG 1 cut(s) 282
BmiI GGNNCC 1 cut(s) 300
BmsI GCATC 1 cut(s) 61
Bpu14I TTCGAA 1 cut(s) 495
BpuEI CTTGAG 2 cut(s) 350, 464
BsaAI YACGTR 1 cut(s) 319
BsaJI CCNNGG 2 cut(s) 170, 451
BsaWI WCCGGW 1 cut(s) 331
BsaXI ACNNNNNCTCC 4 cut(s) 270, 300, 476, 506
Bsc4I CCNNNNNNNGG 2 cut(s) 421, 481
Bse1I ACTGG 1 cut(s) 352
Bse21I CCTNAGG 1 cut(s) 56
BseAI TCCGGA 1 cut(s) 331
BseDI CCNNGG 2 cut(s) 170, 451
BseGI GGATG 3 cut(s) 38, 50, 493
BseLI CCNNNNNNNGG 2 cut(s) 421, 481
BseNI ACTGG 1 cut(s) 352
BseRI GAGGAG 2 cut(s) 190, 256
BseSI GKGCMC 1 cut(s) 324
BseXI GCAGC 5 cut(s) 32, 35, 74, 77, 199
BsgI GTGCAG 1 cut(s) 446
BshFI GGCC 1 cut(s) 450
BshNI GGYRCC 1 cut(s) 298
BsiHKAI GWGCWC 1 cut(s) 366
BsiSI CCGG 1 cut(s) 332
BslFI GGGAC 1 cut(s) 90
BslI CCNNNNNNNGG 2 cut(s) 421, 481
BsmAI GTCTC 1 cut(s) 229
BsmFI GGGAC 1 cut(s) 90
BsnI GGCC 1 cut(s) 450
Bsp119I TTCGAA 1 cut(s) 495
Bsp1286I GDGCHC 2 cut(s) 324, 366
Bsp13I TCCGGA 1 cut(s) 331
BspANI GGCC 1 cut(s) 450
BspEI TCCGGA 1 cut(s) 331
BspLI GGNNCC 1 cut(s) 300
BspT104I TTCGAA 1 cut(s) 495
BspT107I GGYRCC 1 cut(s) 298
BsrBI CCGCTC 1 cut(s) 155
BsrI ACTGG 1 cut(s) 352
BssECI CCNNGG 2 cut(s) 170, 451
Bst4CI ACNGT 1 cut(s) 16
Bst6I CTCTTC 1 cut(s) 40
BstAPI GCANNNNNTGC 1 cut(s) 71
BstBAI YACGTR 1 cut(s) 319
BstBI TTCGAA 1 cut(s) 495
BstC8I GCNNGC 1 cut(s) 395
BstDEI CTNAG 1 cut(s) 56
BstDSI CCRYGG 2 cut(s) 170, 451
BstF5I GGATG 3 cut(s) 38, 50, 493
BstHHI GCGC 1 cut(s) 458
BstMAI GTCTC 1 cut(s) 229
BstMWI GCNNNNNNNGC 5 cut(s) 17, 26, 29, 71, 260
BstSLI GKGCMC 1 cut(s) 324
BstV1I GCAGC 5 cut(s) 32, 35, 74, 77, 199
Bsu36I CCTNAGG 1 cut(s) 56
BsuRI GGCC 1 cut(s) 450
BtgI CCRYGG 2 cut(s) 170, 451
BtsCI GGATG 3 cut(s) 38, 50, 493
BtsI GCAGTG 1 cut(s) 163
BtsIMutI CAGTG 2 cut(s) 21, 163
Cac8I GCNNGC 1 cut(s) 395
CfoI GCGC 1 cut(s) 458
Csp6I GTAC 2 cut(s) 313, 373
CviAII CATG 1 cut(s) 352
CviJI RGCY 7 cut(s) 26, 82, 281, 364, 382, 407, 450
CviKI_1 RGCY 7 cut(s) 26, 82, 281, 364, 382, 407, 450
CviQI GTAC 2 cut(s) 313, 373
DdeI CTNAG 1 cut(s) 56
Eam1104I CTCTTC 1 cut(s) 40
EarI CTCTTC 1 cut(s) 40
Ecl136II GAGCTC 1 cut(s) 364
Eco24I GRGCYC 1 cut(s) 366
Eco53kI GAGCTC 1 cut(s) 364
Eco57I CTGAAG 1 cut(s) 326
Eco72I CACGTG 1 cut(s) 319
Eco81I CCTNAGG 1 cut(s) 56
EcoICRI GAGCTC 1 cut(s) 364
EcoRI GAATTC 1 cut(s) 46
EcoT38I GRGCYC 1 cut(s) 366
FaeI CATG 1 cut(s) 355
FaiI YATR 3 cut(s) 8, 353, 420
FaqI GGGAC 1 cut(s) 90
FatI CATG 1 cut(s) 351
FauI CCCGC 2 cut(s) 67, 259
FokI GGATG 3 cut(s) 25, 37, 500
FriOI GRGCYC 1 cut(s) 366
FspBI CTAG 1 cut(s) 282
GlaI GCGC 1 cut(s) 457
HaeIII GGCC 1 cut(s) 450
HapII CCGG 1 cut(s) 332
HhaI GCGC 1 cut(s) 458
Hin1II CATG 1 cut(s) 355
Hin6I GCGC 1 cut(s) 456
HinP1I GCGC 1 cut(s) 456
HpaII CCGG 1 cut(s) 332
HphI GGTGA 3 cut(s) 151, 304, 371
Hpy166II GTNNAC 2 cut(s) 313, 340
Hpy188I TCNGA 2 cut(s) 244, 306
Hpy188III TCNNGA 1 cut(s) 332
Hpy8I GTNNAC 2 cut(s) 313, 340
Hpy99I CGWCG 2 cut(s) 437, 440
HpyAV CCTTC 6 cut(s) 117, 186, 289, 301, 350, 382
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4IV ACGT 2 cut(s) 318, 375
HpyCH4V TGCA 1 cut(s) 427
HpyF10VI GCNNNNNNNGC 5 cut(s) 17, 26, 29, 71, 260
HpyF3I CTNAG 1 cut(s) 56
HpySE526I ACGT 2 cut(s) 318, 375
Hsp92II CATG 1 cut(s) 355
HspAI GCGC 1 cut(s) 456
Kpn2I TCCGGA 1 cut(s) 331
LmnI GCTCC 1 cut(s) 278
LpnPI CCDG 4 cut(s) 56, 333, 337, 345
Lsp1109I GCAGC 5 cut(s) 32, 35, 74, 77, 199
LweI GCATC 1 cut(s) 61
MaeI CTAG 1 cut(s) 282
MaeII ACGT 2 cut(s) 318, 375
MbiI CCGCTC 1 cut(s) 155
MboII GAAGA 2 cut(s) 27, 460
MhlI GDGCHC 2 cut(s) 324, 366
MluCI AATT 2 cut(s) 46, 182
MnlI CCTC 9 cut(s) 43, 168, 171, 199, 274, 277, 312, 328, 478
MroI TCCGGA 1 cut(s) 331
MroXI GAANNNNTTC 1 cut(s) 89
MseI TTAA 2 cut(s) 185, 462
MspA1I CMGCKG 1 cut(s) 82
MspI CCGG 1 cut(s) 332
MwoI GCNNNNNNNGC 5 cut(s) 17, 26, 29, 71, 260
NlaIII CATG 1 cut(s) 355
NlaIV GGNNCC 1 cut(s) 300
NspV TTCGAA 1 cut(s) 495
PdmI GAANNNNTTC 1 cut(s) 89
PmaCI CACGTG 1 cut(s) 319
PmlI CACGTG 1 cut(s) 319
Ppu21I YACGTR 1 cut(s) 319
PsiI TTATAA 1 cut(s) 420
Psp124BI GAGCTC 1 cut(s) 366
PspCI CACGTG 1 cut(s) 319
PspN4I GGNNCC 1 cut(s) 300
PvuII CAGCTG 1 cut(s) 82
RsaI GTAC 2 cut(s) 314, 374
RsaNI GTAC 2 cut(s) 313, 373
SacI GAGCTC 1 cut(s) 366
SaqAI TTAA 2 cut(s) 185, 462
SduI GDGCHC 2 cut(s) 324, 366
SfaNI GCATC 1 cut(s) 61
SfuI TTCGAA 1 cut(s) 495
SmlI CTYRAG 2 cut(s) 365, 479
SmoI CTYRAG 2 cut(s) 365, 479
Sse9I AATT 2 cut(s) 46, 182
SspMI CTAG 1 cut(s) 282
SstI GAGCTC 1 cut(s) 366
TaaI ACNGT 1 cut(s) 16
TaiI ACGT 2 cut(s) 321, 378
TaqI TCGA 2 cut(s) 438, 495
TasI AATT 2 cut(s) 46, 182
TauI GCSGC 6 cut(s) 29, 32, 218, 257, 260, 263
Tru1I TTAA 2 cut(s) 185, 462
Tru9I TTAA 2 cut(s) 185, 462
TscAI CASTG 2 cut(s) 21, 170
TseI GCWGC 5 cut(s) 20, 23, 62, 65, 212
TspDTI ATGAA 4 cut(s) 27, 39, 114, 261
TspRI CASTG 2 cut(s) 21, 170
XapI RAATTY 1 cut(s) 46
XmnI GAANNNNTTC 1 cut(s) 89
XspI CTAG 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.