Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000396.1

Orthogroup ID

OG0011069

Physical Location & Seq

Genomic Coordinates Forward (+)

52852 .. 53388

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000396.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atgagtataggaggaggaacagtagggttattaagctcagccacagccacagccacagccataggcagagctgcgtcgagtacaccagcagatgcggggcaaaggaattcacgattcccttgttgctgggcagcggcaggggcaaagctcactcgcgctcactacccaacaactccaactctaactccaactccaactccaactcctaggaggaaaagtagaaggattctttgcgaagtcgctatcggatccgatttatctccatcaacatcatcggaggtagaagcggccgcctcttcaaagatcggggctagggtcaaggtcaccgtgcctctcaaggtgtaccacgtgcccagagttcccgaggtcgacatcactggcatggaaggtgaactcaagcagtacgttggcctctggaagggcaaacggatttctgccaatctcccttataaagtacagttctttgtcgacgtcgaaggccgtggccctgttaaattctttgcgcatctcaaggaggacgagttcgaatacctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006464 GO:0006629 GO:0006631 GO:0006633 GO:0006732 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009106 GO:0009107 GO:0009108 GO:0009249 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016053 GO:0016740 GO:0016782 GO:0016783 GO:0016992 GO:0018065 GO:0018130 GO:0018193 GO:0018205 GO:0019538 GO:0019752 GO:0032787 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0051186 GO:0051188 GO:0051604 GO:0070283 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00785 ko01100 map00785 map01100

Pfam Domains

Protein Families

LIAS_N Radical_SAM

Protein Analysis

178

Amino Acids

19.03

Weight (kDa)

9.6

Isoelectric Point (pI)

36.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08410 AT5G08410 AT5G23440
fragaria_vesca	FvH4_4g37381 FvH4_4g37381
malus_domestica	MD10G1109200.v1.1 MD13G1000200.v1.1 MD16G1005600.v1.1
prunus_persica	Prupe.1G352600_v2.0.a1
pyrus_communis	pycom13g00020 pycom2749g00070
rosa_chinensis	RchiOBHm_Chr4g0447301
rosa_laevigata	RLG00000005588
rosa_multiflora	Rmu_ssc0000396.1_g000007
rosa_roxburghii	Rroxscaffold_5G00387690
rosa_rugosa	Rorug04G0379800 Rorug04G0379800
rosa_samantha	Rh4BG450100 Rh4DG448500
rosa_wichuraiana	Rw4G037740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	450
AatII	GACGTC	1 cut(s)	474
Acc16I	TGCGCA	1 cut(s)	504
AccI	GTMKAC	2 cut(s)	369, 468
AccII	CGCG	1 cut(s)	156
AciI	CCGC	4 cut(s)	95, 134, 287, 291
AclWI	GGATC	2 cut(s)	243, 256
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	2 cut(s)	106, 494
AcvI	CACGTG	1 cut(s)	349
AcyI	GRCGYC	1 cut(s)	471
AfaI	GTAC	4 cut(s)	82, 344, 404, 456
AfiI	CCNNNNNNNGG	1 cut(s)	418
AgsI	TTSAA	1 cut(s)	300
AloI	GAACNNNNNNTCC	1 cut(s)	506
AluBI	AGCT	3 cut(s)	36, 71, 148
AluI	AGCT	3 cut(s)	36, 71, 148
AlwI	GGATC	2 cut(s)	243, 256
Ama87I	CYCGRG	1 cut(s)	362
AoxI	GGCC	4 cut(s)	288, 409, 478, 484
ApeKI	GCWGC	2 cut(s)	71, 131
ApoI	RAATTY	2 cut(s)	106, 494
AspA2I	CCTAGG	1 cut(s)	206
AspLEI	GCGC	2 cut(s)	158, 505
AspS9I	GGNCC	1 cut(s)	485
AsuHPI	GGTGA	2 cut(s)	316, 401
AsuII	TTCGAA	1 cut(s)	525
AvaI	CYCGRG	1 cut(s)	362
AvrII	CCTAGG	1 cut(s)	206
BaeGI	GKGCMC	1 cut(s)	354
BamHI	GGATCC	1 cut(s)	248
BbrPI	CACGTG	1 cut(s)	349
BbvI	GCAGC	2 cut(s)	58, 143
BccI	CCATC	1 cut(s)	271
BceAI	ACGGC	1 cut(s)	465
BfaI	CTAG	2 cut(s)	207, 312
BisI	GCNGC	5 cut(s)	72, 132, 135, 288, 291
BlnI	CCTAGG	1 cut(s)	206
BlpI	GCTNAGC	1 cut(s)	37
BlsI	GCNGC	5 cut(s)	73, 133, 136, 289, 292
BmeT110I	CYCGRG	1 cut(s)	362
BmgT120I	GGNCC	1 cut(s)	485
BmiI	GGNNCC	1 cut(s)	250
BmsI	GCATC	2 cut(s)	82, 514
Bpu1102I	GCTNAGC	1 cut(s)	37
Bpu14I	TTCGAA	1 cut(s)	525
BpuEI	CTTGAG	3 cut(s)	320, 380, 494
BsaAI	YACGTR	1 cut(s)	349
BsaHI	GRCGYC	1 cut(s)	471
BsaJI	CCNNGG	3 cut(s)	206, 363, 481
Bsc4I	CCNNNNNNNGG	1 cut(s)	418
Bse1I	ACTGG	1 cut(s)	382
BseDI	CCNNGG	3 cut(s)	206, 363, 481
BseLI	CCNNNNNNNGG	1 cut(s)	418
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	1 cut(s)	382
BseRI	GAGGAG	1 cut(s)	27
BseSI	GKGCMC	1 cut(s)	354
BseX3I	CGGCCG	1 cut(s)	288
BseXI	GCAGC	2 cut(s)	58, 143
BseYI	CCCAGC	1 cut(s)	126
Bsh1236I	CGCG	1 cut(s)	156
Bsh1285I	CGRYCG	1 cut(s)	291
BshFI	GGCC	4 cut(s)	290, 411, 480, 486
BsiEI	CGRYCG	1 cut(s)	291
BsiHKCI	CYCGRG	1 cut(s)	362
BslI	CCNNNNNNNGG	1 cut(s)	418
BsnI	GGCC	4 cut(s)	290, 411, 480, 486
BsoBI	CYCGRG	1 cut(s)	362
Bsp119I	TTCGAA	1 cut(s)	525
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp143I	GATC	2 cut(s)	248, 303
Bsp1720I	GCTNAGC	1 cut(s)	37
BspACI	CCGC	4 cut(s)	95, 134, 287, 291
BspANI	GGCC	4 cut(s)	290, 411, 480, 486
BspCNI	CTCAG	1 cut(s)	50
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	1 cut(s)	250
BspPI	GGATC	2 cut(s)	243, 256
BspT104I	TTCGAA	1 cut(s)	525
BsrI	ACTGG	1 cut(s)	382
BssECI	CCNNGG	3 cut(s)	206, 363, 481
BssMI	GATC	2 cut(s)	248, 303
BssNI	GRCGYC	1 cut(s)	471
BssT1I	CCWWGG	1 cut(s)	206
Bst4CI	ACNGT	3 cut(s)	22, 328, 459
Bst6I	CTCTTC	1 cut(s)	301
BstACI	GRCGYC	1 cut(s)	471
BstBAI	YACGTR	1 cut(s)	349
BstBI	TTCGAA	1 cut(s)	525
BstDEI	CTNAG	1 cut(s)	37
BstDSI	CCRYGG	1 cut(s)	481
BstEII	GGTNACC	1 cut(s)	322
BstENI	CCTNNNNNAGG	1 cut(s)	416
BstFNI	CGCG	1 cut(s)	156
BstHHI	GCGC	2 cut(s)	158, 505
BstKTI	GATC	2 cut(s)	251, 306
BstMBI	GATC	2 cut(s)	248, 303
BstMCI	CGRYCG	1 cut(s)	291
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstPI	GGTNACC	1 cut(s)	322
BstSLI	GKGCMC	1 cut(s)	354
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	2 cut(s)	58, 143
BstX2I	RGATCY	1 cut(s)	248
BstYI	RGATCY	1 cut(s)	248
BstZI	CGGCCG	1 cut(s)	288
BsuRI	GGCC	4 cut(s)	290, 411, 480, 486
BtgI	CCRYGG	1 cut(s)	481
BtsIMutI	CAGTG	1 cut(s)	375
CciNI	GCGGCCGC	1 cut(s)	288
CfoI	GCGC	2 cut(s)	158, 505
Cfr13I	GGNCC	1 cut(s)	485
CseI	GACGC	1 cut(s)	63
Csp6I	GTAC	4 cut(s)	81, 343, 403, 455
CviAII	CATG	1 cut(s)	382
CviQI	GTAC	4 cut(s)	81, 343, 403, 455
DdeI	CTNAG	1 cut(s)	37
DpnI	GATC	2 cut(s)	250, 305
DpnII	GATC	2 cut(s)	248, 303
EaeI	YGGCCR	1 cut(s)	288
EagI	CGGCCG	1 cut(s)	288
Eam1104I	CTCTTC	1 cut(s)	301
EarI	CTCTTC	1 cut(s)	301
EclXI	CGGCCG	1 cut(s)	288
Eco130I	CCWWGG	1 cut(s)	206
Eco52I	CGGCCG	1 cut(s)	288
Eco72I	CACGTG	1 cut(s)	349
Eco88I	CYCGRG	1 cut(s)	362
Eco91I	GGTNACC	1 cut(s)	322
EcoNI	CCTNNNNNAGG	1 cut(s)	416
EcoO65I	GGTNACC	1 cut(s)	322
EcoRI	GAATTC	1 cut(s)	106
EcoT14I	CCWWGG	1 cut(s)	206
ErhI	CCWWGG	1 cut(s)	206
FaeI	CATG	1 cut(s)	385
FaiI	YATR	4 cut(s)	8, 62, 383, 450
FatI	CATG	1 cut(s)	381
FauI	CCCGC	1 cut(s)	88
FblI	GTMKAC	2 cut(s)	369, 468
Fnu4HI	GCNGC	5 cut(s)	72, 132, 135, 288, 291
Fsp4HI	GCNGC	5 cut(s)	72, 132, 135, 288, 291
FspBI	CTAG	2 cut(s)	207, 312
FspI	TGCGCA	1 cut(s)	504
GlaI	GCGC	2 cut(s)	157, 504
GluI	GCNGC	5 cut(s)	72, 132, 135, 288, 291
GsaI	CCCAGC	1 cut(s)	130
HaeIII	GGCC	4 cut(s)	290, 411, 480, 486
HgaI	GACGC	1 cut(s)	63
HhaI	GCGC	2 cut(s)	158, 505
Hin1I	GRCGYC	1 cut(s)	471
Hin1II	CATG	1 cut(s)	385
Hin6I	GCGC	2 cut(s)	156, 503
HinP1I	GCGC	2 cut(s)	156, 503
HincII	GTYRAC	2 cut(s)	370, 469
HindII	GTYRAC	2 cut(s)	370, 469
HinfI	GANTC	2 cut(s)	114, 226
HphI	GGTGA	2 cut(s)	316, 401
Hpy166II	GTNNAC	5 cut(s)	83, 343, 370, 392, 469
Hpy188I	TCNGA	3 cut(s)	248, 253, 277
Hpy188III	TCNNGA	3 cut(s)	111, 362, 415
Hpy8I	GTNNAC	5 cut(s)	83, 343, 370, 392, 469
Hpy99I	CGWCG	3 cut(s)	79, 473, 476
HpyAV	CCTTC	4 cut(s)	216, 380, 412, 470
HpyCH4III	ACNGT	3 cut(s)	22, 328, 459
HpyCH4IV	ACGT	3 cut(s)	348, 405, 471
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	1 cut(s)	37
HpySE526I	ACGT	3 cut(s)	348, 405, 471
Hsp92I	GRCGYC	1 cut(s)	471
Hsp92II	CATG	1 cut(s)	385
HspAI	GCGC	2 cut(s)	156, 503
Kzo9I	GATC	2 cut(s)	248, 303
LpnPI	CCDG	7 cut(s)	99, 112, 123, 363, 367, 400, 501
Lsp1109I	GCAGC	2 cut(s)	58, 143
LweI	GCATC	2 cut(s)	82, 514
MaeI	CTAG	2 cut(s)	207, 312
MaeII	ACGT	3 cut(s)	348, 405, 471
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	2 cut(s)	250, 305
MboI	GATC	2 cut(s)	248, 303
MboII	GAAGA	1 cut(s)	288
MflI	RGATCY	1 cut(s)	248
MhlI	GDGCHC	1 cut(s)	354
MluCI	AATT	2 cut(s)	106, 494
MmeI	TCCRAC	4 cut(s)	200, 212, 218, 224
MnlI	CCTC	9 cut(s)	5, 8, 204, 271, 304, 342, 358, 422, 508
MseI	TTAA	2 cut(s)	32, 492
MslI	CAYNNNNRTG	1 cut(s)	380
MspA1I	CMGCKG	1 cut(s)	134
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	140
NdeII	GATC	2 cut(s)	248, 303
NlaIII	CATG	1 cut(s)	385
NlaIV	GGNNCC	1 cut(s)	250
NmuCI	GTSAC	1 cut(s)	322
NotI	GCGGCCGC	1 cut(s)	288
NsbI	TGCGCA	1 cut(s)	504
NspV	TTCGAA	1 cut(s)	525
PfeI	GAWTC	2 cut(s)	114, 226
PkrI	GCNGC	5 cut(s)	73, 133, 136, 289, 292
PmaCI	CACGTG	1 cut(s)	349
PmlI	CACGTG	1 cut(s)	349
Ppu21I	YACGTR	1 cut(s)	349
PsiI	TTATAA	1 cut(s)	450
PspCI	CACGTG	1 cut(s)	349
PspEI	GGTNACC	1 cut(s)	322
PspFI	CCCAGC	1 cut(s)	126
PspN4I	GGNNCC	1 cut(s)	250
PspPI	GGNCC	1 cut(s)	485
PsuI	RGATCY	1 cut(s)	248
RsaI	GTAC	4 cut(s)	82, 344, 404, 456
RsaNI	GTAC	4 cut(s)	81, 343, 403, 455
RseI	CAYNNNNRTG	1 cut(s)	380
SalI	GTCGAC	2 cut(s)	368, 467
SaqAI	TTAA	2 cut(s)	32, 492
SatI	GCNGC	5 cut(s)	72, 132, 135, 288, 291
Sau3AI	GATC	2 cut(s)	248, 303
Sau96I	GGNCC	1 cut(s)	485
SduI	GDGCHC	1 cut(s)	354
SfaNI	GCATC	2 cut(s)	82, 514
SfuI	TTCGAA	1 cut(s)	525
SmiMI	CAYNNNNRTG	1 cut(s)	380
SmlI	CTYRAG	3 cut(s)	335, 395, 509
SmoI	CTYRAG	3 cut(s)	335, 395, 509
Sse9I	AATT	2 cut(s)	106, 494
SsiI	CCGC	4 cut(s)	95, 134, 287, 291
SspMI	CTAG	2 cut(s)	207, 312
StyI	CCWWGG	1 cut(s)	206
TaaI	ACNGT	3 cut(s)	22, 328, 459
TaiI	ACGT	3 cut(s)	351, 408, 474
TaqI	TCGA	5 cut(s)	77, 369, 468, 474, 525
TasI	AATT	2 cut(s)	106, 494
TatI	WGTACW	2 cut(s)	80, 454
TauI	GCSGC	3 cut(s)	137, 290, 293
TfiI	GAWTC	2 cut(s)	114, 226
Tru1I	TTAA	2 cut(s)	32, 492
Tru9I	TTAA	2 cut(s)	32, 492
TscAI	CASTG	1 cut(s)	382
TseFI	GTSAC	1 cut(s)	322
TseI	GCWGC	2 cut(s)	71, 131
Tsp45I	GTSAC	1 cut(s)	322
TspGWI	ACGGA	1 cut(s)	442
TspRI	CASTG	1 cut(s)	382
XagI	CCTNNNNNAGG	1 cut(s)	416
XapI	RAATTY	2 cut(s)	106, 494
XmaJI	CCTAGG	1 cut(s)	206
XmiI	GTMKAC	2 cut(s)	369, 468
XspI	CTAG	2 cut(s)	207, 312
ZraI	GACGTC	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.