AT5G23440

(ferredoxin thioredoxin reductase subunit A (variable subunit) 1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011069
Physical Location & Seq
Reverse (-)
7902895 .. 7903899
1005 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G23440.1

Sequence Viewer

Length: 549 bp
ATGAGTAGCCAAATCGCTTTGTCACCGGCCATCGCCGCCGCCATTCGCCGTCCGTCCTCTCACGACTGTCTATCCGCTTCCGCCACTACTGCTACCGCCACCCCCATGGCTCTCAAATCTTGCATCGTCGCACCTCTCTCGCTATTCACCTCTCAATCTCAAATCAAACACTCAAGCTCAAGAAAAACTTCTCGAACCACGATTCGATGCGATGTAGCGATAAAATCCGCAGATTCGATAAACGCAGACGCCAATCCTTCGTCCTCACCGTCATCAGAGGAAGAAATCGAAGCGGAAGCGAAGGCGAAGATAGGATCTAGGGTTAGAGTAACTGCACCGTTGAAGGTTTATCATGTAAATCGAGTTCCAGAGGTTGATTTAGAAGGTATGGAAGGTAAACTCAAAGATTACGTTGCTGTTTGGAAAGGGAAACGAATCTCAGCTAATCTTCCTTATAAGATTGAGTTCTTCAAAGAAATTGAAGGTCGTGGTCTTGTTAAATTTGTTTCACATCTTAAGGAAGATGAGTTCGAGTTCATTGATCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FeThRed_A

Protein Analysis

182

Amino Acids

19.82

Weight (kDa)

8.75

Isoelectric Point (pI)

58.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FeThRed_A PF02941 104 - 176 4.5e-25 Ferredoxin thioredoxin reductase variable alpha chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011069)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08410 AT5G08410 AT5G23440
fragaria_vesca FvH4_4g37381 FvH4_4g37381
malus_domestica MD10G1109200.v1.1 MD13G1000200.v1.1 MD16G1005600.v1.1
prunus_persica Prupe.1G352600_v2.0.a1
pyrus_communis pycom13g00020 pycom2749g00070
rosa_chinensis RchiOBHm_Chr4g0447301
rosa_laevigata RLG00000005588
rosa_multiflora Rmu_ssc0000396.1_g000007
rosa_roxburghii Rroxscaffold_5G00387690
rosa_rugosa Rorug04G0379800 Rorug04G0379800
rosa_samantha Rh4BG450100 Rh4DG448500
rosa_wichuraiana Rw4G037740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 456
AciI CCGC 7 cut(s) 36, 39, 75, 81, 96, 228, 293
AclWI GGATC 1 cut(s) 322
AcoI YGGCCR 1 cut(s) 27
AcsI RAATTY 1 cut(s) 500
AcyI GRCGYC 1 cut(s) 249
AflII CTTAAG 1 cut(s) 515
AgsI TTSAA 3 cut(s) 343, 472, 482
AloI GAACNNNNNNTCC 2 cut(s) 512, 544
AluBI AGCT 2 cut(s) 177, 443
AluI AGCT 2 cut(s) 177, 443
AlwI GGATC 1 cut(s) 322
AoxI GGCC 1 cut(s) 27
ApoI RAATTY 1 cut(s) 500
Asp700I GAANNNNTTC 1 cut(s) 187
AsuHPI GGTGA 3 cut(s) 15, 139, 258
BccI CCATC 1 cut(s) 38
BceAI ACGGC 1 cut(s) 33
BcgI CGANNNNNNTGC 2 cut(s) 120, 154
BclI TGATCA 1 cut(s) 541
BfaI CTAG 1 cut(s) 318
BfrI CTTAAG 1 cut(s) 515
BisI GCNGC 2 cut(s) 36, 39
BlsI GCNGC 2 cut(s) 37, 40
BmsI GCATC 2 cut(s) 132, 197
BpuEI CTTGAG 2 cut(s) 157, 163
BsaHI GRCGYC 1 cut(s) 249
BsaJI CCNNGG 1 cut(s) 105
Bse118I RCCGGY 1 cut(s) 25
BseDI CCNNGG 1 cut(s) 105
BseMII CTCAG 1 cut(s) 453
BsgI GTGCAG 1 cut(s) 318
BshFI GGCC 1 cut(s) 29
BsiSI CCGG 1 cut(s) 26
BsnI GGCC 1 cut(s) 29
Bsp143I GATC 2 cut(s) 314, 541
Bsp19I CCATGG 1 cut(s) 105
BspACI CCGC 7 cut(s) 36, 39, 75, 81, 96, 228, 293
BspANI GGCC 1 cut(s) 29
BspCNI CTCAG 1 cut(s) 452
BspPI GGATC 1 cut(s) 322
BspTI CTTAAG 1 cut(s) 515
BsrFI RCCGGY 1 cut(s) 25
BssAI RCCGGY 1 cut(s) 25
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 2 cut(s) 314, 541
BssNI GRCGYC 1 cut(s) 249
BssT1I CCWWGG 1 cut(s) 105
Bst4CI ACNGT 3 cut(s) 68, 270, 339
BstACI GRCGYC 1 cut(s) 249
BstAFI CTTAAG 1 cut(s) 515
BstDEI CTNAG 1 cut(s) 439
BstDSI CCRYGG 1 cut(s) 105
BstKTI GATC 2 cut(s) 317, 544
BstMBI GATC 2 cut(s) 314, 541
BstMWI GCNNNNNNNGC 2 cut(s) 35, 89
BstX2I RGATCY 1 cut(s) 314
BstXI CCANNNNNNTGG 1 cut(s) 106
BstYI RGATCY 1 cut(s) 314
BsuRI GGCC 1 cut(s) 29
BtgI CCRYGG 1 cut(s) 105
BtgZI GCGATG 2 cut(s) 16, 225
Cfr10I RCCGGY 1 cut(s) 25
CseI GACGC 1 cut(s) 257
CviAII CATG 2 cut(s) 106, 353
CviJI RGCY 5 cut(s) 9, 29, 110, 177, 443
CviKI_1 RGCY 5 cut(s) 9, 29, 110, 177, 443
DdeI CTNAG 1 cut(s) 439
DpnI GATC 2 cut(s) 316, 543
DpnII GATC 2 cut(s) 314, 541
EaeI YGGCCR 1 cut(s) 27
EciI GGCGGA 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 105
EcoT14I CCWWGG 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 105
FaeI CATG 2 cut(s) 109, 356
FaiI YATR 4 cut(s) 107, 354, 389, 456
FalI AAGNNNNNCTT 2 cut(s) 172, 204
FatI CATG 2 cut(s) 105, 352
FbaI TGATCA 1 cut(s) 541
Fnu4HI GCNGC 2 cut(s) 36, 39
Fsp4HI GCNGC 2 cut(s) 36, 39
FspBI CTAG 1 cut(s) 318
GluI GCNGC 2 cut(s) 36, 39
HaeIII GGCC 1 cut(s) 29
HapII CCGG 1 cut(s) 26
HgaI GACGC 1 cut(s) 257
Hin1I GRCGYC 1 cut(s) 249
Hin1II CATG 2 cut(s) 109, 356
HinfI GANTC 3 cut(s) 202, 233, 435
HpaII CCGG 1 cut(s) 26
HphI GGTGA 3 cut(s) 15, 139, 258
Hpy166II GTNNAC 1 cut(s) 398
Hpy188I TCNGA 1 cut(s) 277
Hpy188III TCNNGA 4 cut(s) 62, 180, 192, 368
Hpy8I GTNNAC 1 cut(s) 398
Hpy99I CGWCG 1 cut(s) 131
HpyAV CCTTC 6 cut(s) 267, 295, 337, 377, 386, 476
HpyCH4III ACNGT 3 cut(s) 68, 270, 339
HpyCH4IV ACGT 1 cut(s) 411
HpyCH4V TGCA 2 cut(s) 123, 335
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 89
HpyF3I CTNAG 1 cut(s) 439
HpySE526I ACGT 1 cut(s) 411
Hsp92I GRCGYC 1 cut(s) 249
Hsp92II CATG 2 cut(s) 109, 356
Ksp22I TGATCA 1 cut(s) 541
Kzo9I GATC 2 cut(s) 314, 541
LpnPI CCDG 2 cut(s) 39, 381
LweI GCATC 2 cut(s) 132, 197
MaeI CTAG 1 cut(s) 318
MaeII ACGT 1 cut(s) 411
MaeIII GTNAC 2 cut(s) 21, 328
MalI GATC 2 cut(s) 316, 543
MboI GATC 2 cut(s) 314, 541
MboII GAAGA 5 cut(s) 293, 319, 440, 460, 533
MflI RGATCY 1 cut(s) 314
MluCI AATT 2 cut(s) 477, 500
MnlI CCTC 6 cut(s) 67, 144, 160, 271, 274, 364
MroXI GAANNNNTTC 1 cut(s) 187
MseI TTAA 2 cut(s) 498, 516
MslI CAYNNNNRTG 1 cut(s) 104
MspCI CTTAAG 1 cut(s) 515
MspI CCGG 1 cut(s) 26
MwoI GCNNNNNNNGC 2 cut(s) 35, 89
NcoI CCATGG 1 cut(s) 105
NdeII GATC 2 cut(s) 314, 541
NlaIII CATG 2 cut(s) 109, 356
NmuCI GTSAC 1 cut(s) 21
PcsI WCGNNNNNNNCGW 1 cut(s) 266
PdmI GAANNNNTTC 1 cut(s) 187
PfeI GAWTC 3 cut(s) 202, 233, 435
PkrI GCNGC 2 cut(s) 37, 40
PsiI TTATAA 1 cut(s) 456
PsrI GAACNNNNNNTAC 2 cut(s) 348, 380
PsuI RGATCY 1 cut(s) 314
RseI CAYNNNNRTG 1 cut(s) 104
SaqAI TTAA 2 cut(s) 498, 516
SatI GCNGC 2 cut(s) 36, 39
Sau3AI GATC 2 cut(s) 314, 541
SfaNI GCATC 2 cut(s) 132, 197
SmiMI CAYNNNNRTG 1 cut(s) 104
SmlI CTYRAG 3 cut(s) 172, 178, 515
SmoI CTYRAG 3 cut(s) 172, 178, 515
Sse9I AATT 2 cut(s) 477, 500
SsiI CCGC 7 cut(s) 36, 39, 75, 81, 96, 228, 293
SspMI CTAG 1 cut(s) 318
StyI CCWWGG 1 cut(s) 105
TaaI ACNGT 3 cut(s) 68, 270, 339
TaiI ACGT 1 cut(s) 414
TaqI TCGA 6 cut(s) 193, 205, 236, 288, 361, 531
TasI AATT 2 cut(s) 477, 500
TauI GCSGC 2 cut(s) 38, 41
TfiI GAWTC 3 cut(s) 202, 233, 435
Tru1I TTAA 2 cut(s) 498, 516
Tru9I TTAA 2 cut(s) 498, 516
TseFI GTSAC 1 cut(s) 21
Tsp45I GTSAC 1 cut(s) 21
TspDTI ATGAA 1 cut(s) 526
TspGWI ACGGA 1 cut(s) 42
Vha464I CTTAAG 1 cut(s) 515
XapI RAATTY 1 cut(s) 500
XmnI GAANNNNTTC 1 cut(s) 187
XspI CTAG 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.