AT5G08770

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015319
Physical Location & Seq
Reverse (-)
2855638 .. 2856567
930 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G08770.1

Sequence Viewer

Length: 894 bp
ATGCTTCCATTAAAGCTTGCTCGATCTCTTCTTCTCCACGAGACTCTCAATCTCACTCATAATTCCGGCGATACAGACGACGTTGATGAAGACGGAGAAACCAGTATCCGGCAAATTCTAAGCTCCTACAAGCAATCAAAAACCCGATCGAGATCCGATAACAACAAGACGAGAAATTCGAAAACCCCATTGCTATACTTCGTTCCAACACGAGAATTGATCTCAGATACATACCGATTAGCAACAATCGGGAGAGATCTAGGTATGGATATGTACCCAACACCATCACTCTCTCACATCATCTTCTCATTCCCATCGCCAGAATCAAAATCGCCGTCACCTTTCTCTTCTTCATCGCATCCTTCGACATGGTCGTCTTCTGCTTCGCTATCGTCGTCTCTCTCGTGGTCTCTTCCTAACGACGCCGTAATGCTCTCCTTCCCGTCTCTCTCTGCCTCATCGCTCTCTCATCTCCGATCCTTCGTCTCCCTCTCCAACGGTCTCTTCAAACTCGTCTTCTCCGCAACCACCGTAGAAACATCTCCCTCTTCCTCCGGATCTGTTAGCAACTGGGACTGCTGCTCCGTTTCACTCTTCTCAAAAATCGCCAACAAGCGAATCGGATCGATGGAGAGTTTTTCGAATGCATTGGCTTCAAAAGGATGGACAATTTACAAAACGAAAGAGAATCCGACGCCGGAATCTACTACCAACGGAGTGAGCTCAGTGTATCTGTTTAGGAAAGTGTATACTGGTCGGATCATGACCCGAGAAGGAAACGGGTCGTGTAGAGTAAGAGAGCTGAGACTTCCTCAATTGGATTTCAGGAACGCACCTCTACGGATTCTGCAATATTTGATGTTGATGACTGACGATATATTTTTCCTTGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

297

Amino Acids

32.91

Weight (kDa)

9.24

Isoelectric Point (pI)

49.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015319)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08770
fragaria_vesca FvH4_1g25250 FvH4_1g25250
malus_domestica MD15G1137000.v1.1 MD15G1137300.v1.1
prunus_persica Prupe.4G279900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0123171
rosa_multiflora Rmu_co8220114.1_g000001
rosa_roxburghii Rroxscaffold_2G00120860
rosa_rugosa Rorug02G0243600
rosa_samantha Rh2AG303100 Rh2BG311000 Rh2CG289400 Rh2DG327100
rosa_wichuraiana Rw2G024140 Rw2G024230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 373
AccI GTMKAC 1 cut(s) 749
AccIII TCCGGA 1 cut(s) 554
AciI CCGC 1 cut(s) 522
AclWI GGATC 5 cut(s) 147, 471, 565, 631, 767
AcsI RAATTY 2 cut(s) 114, 175
AcyI GRCGYC 2 cut(s) 423, 695
AfaI GTAC 1 cut(s) 275
AfiI CCNNNNNNNGG 1 cut(s) 108
AgsI TTSAA 2 cut(s) 508, 657
AjuI GAANNNNNNNTTGG 2 cut(s) 488, 520
AluBI AGCT 4 cut(s) 16, 123, 723, 802
AluI AGCT 4 cut(s) 16, 123, 723, 802
Alw21I GWGCWC 1 cut(s) 725
Alw26I GTCTC 7 cut(s) 35, 402, 414, 450, 490, 506, 799
AlwI GGATC 5 cut(s) 147, 471, 565, 631, 767
Ama87I CYCGRG 1 cut(s) 768
Aor13HI TCCGGA 1 cut(s) 554
ApeKI GCWGC 1 cut(s) 579
ApoI RAATTY 2 cut(s) 114, 175
ArsI GACNNNNNNTTYG 4 cut(s) 160, 192, 320, 352
AsuHPI GGTGA 1 cut(s) 330
AsuII TTCGAA 2 cut(s) 179, 641
AvaI CYCGRG 1 cut(s) 768
BanII GRGCYC 1 cut(s) 725
BauI CACGAG 3 cut(s) 38, 210, 403
BbsI GAAGAC 3 cut(s) 96, 369, 508
Bbv12I GWGCWC 1 cut(s) 725
BbvI GCAGC 1 cut(s) 566
BccI CCATC 4 cut(s) 292, 322, 622, 657
BceAI ACGGC 2 cut(s) 319, 410
BciVI GTATCC 1 cut(s) 116
BcoDI GTCTC 7 cut(s) 35, 402, 414, 450, 490, 506, 799
BfaI CTAG 1 cut(s) 260
BfuI GTATCC 1 cut(s) 116
BglII AGATCT 1 cut(s) 256
BisI GCNGC 1 cut(s) 580
BlsI GCNGC 1 cut(s) 581
BmeT110I CYCGRG 1 cut(s) 768
BmrI ACTGGG 1 cut(s) 580
BmsI GCATC 1 cut(s) 367
BmuI ACTGGG 1 cut(s) 580
BpiI GAAGAC 3 cut(s) 96, 369, 508
BplI GAGNNNNNCTC 2 cut(s) 796, 828
Bpu14I TTCGAA 2 cut(s) 179, 641
Bsa29I ATCGAT 1 cut(s) 626
BsaBI GATNNNNATC 1 cut(s) 151
BsaHI GRCGYC 2 cut(s) 423, 695
BsaI GGTCTC 2 cut(s) 414, 506
BsaWI WCCGGW 1 cut(s) 554
BsaXI ACNNNNNCTCC 2 cut(s) 566, 596
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse1I ACTGG 3 cut(s) 102, 575, 757
Bse3DI GCAATG 1 cut(s) 188
Bse8I GATNNNNATC 1 cut(s) 151
BseAI TCCGGA 1 cut(s) 554
BseCI ATCGAT 1 cut(s) 626
BseGI GGATG 2 cut(s) 358, 668
BseJI GATNNNNATC 1 cut(s) 151
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMI GCAATG 1 cut(s) 188
BseMII CTCAG 3 cut(s) 237, 738, 794
BseNI ACTGG 3 cut(s) 102, 575, 757
BseXI GCAGC 1 cut(s) 566
Bsh1285I CGRYCG 1 cut(s) 149
BshVI ATCGAT 1 cut(s) 626
BsiEI CGRYCG 1 cut(s) 149
BsiHKAI GWGCWC 1 cut(s) 725
BsiHKCI CYCGRG 1 cut(s) 768
BsiSI CCGG 4 cut(s) 66, 109, 555, 698
BslFI GGGAC 1 cut(s) 587
BslI CCNNNNNNNGG 1 cut(s) 108
BsmAI GTCTC 7 cut(s) 35, 402, 414, 450, 490, 506, 799
BsmBI CGTCTC 3 cut(s) 402, 450, 490
BsmFI GGGAC 1 cut(s) 587
BsmI GAATGC 1 cut(s) 649
Bso31I GGTCTC 2 cut(s) 414, 506
BsoBI CYCGRG 1 cut(s) 768
Bsp119I TTCGAA 2 cut(s) 179, 641
Bsp1286I GDGCHC 1 cut(s) 725
Bsp13I TCCGGA 1 cut(s) 554
Bsp143I GATC 9 cut(s) 23, 146, 152, 219, 256, 476, 557, 623, 759
BspACI CCGC 1 cut(s) 522
BspCNI CTCAG 3 cut(s) 236, 737, 795
BspDI ATCGAT 1 cut(s) 626
BspEI TCCGGA 1 cut(s) 554
BspHI TCATGA 1 cut(s) 762
BspPI GGATC 5 cut(s) 147, 471, 565, 631, 767
BspT104I TTCGAA 2 cut(s) 179, 641
BspTNI GGTCTC 2 cut(s) 414, 506
BsrDI GCAATG 1 cut(s) 188
BsrI ACTGG 3 cut(s) 102, 575, 757
BssMI GATC 9 cut(s) 23, 146, 152, 219, 256, 476, 557, 623, 759
BssNAI GTATAC 1 cut(s) 750
BssNI GRCGYC 2 cut(s) 423, 695
BssSI CACGAG 3 cut(s) 38, 210, 403
Bst1107I GTATAC 1 cut(s) 750
Bst2BI CACGAG 3 cut(s) 38, 210, 403
Bst4CI ACNGT 2 cut(s) 500, 532
Bst6I CTCTTC 6 cut(s) 33, 352, 417, 509, 553, 599
BstACI GRCGYC 2 cut(s) 423, 695
BstBI TTCGAA 2 cut(s) 179, 641
BstC8I GCNNGC 1 cut(s) 18
BstDEI CTNAG 4 cut(s) 119, 223, 724, 803
BstF5I GGATG 2 cut(s) 358, 668
BstKTI GATC 9 cut(s) 26, 149, 155, 222, 259, 479, 560, 626, 762
BstMAI GTCTC 7 cut(s) 35, 402, 414, 450, 490, 506, 799
BstMBI GATC 9 cut(s) 23, 146, 152, 219, 256, 476, 557, 623, 759
BstMCI CGRYCG 1 cut(s) 149
BstV1I GCAGC 1 cut(s) 566
BstV2I GAAGAC 3 cut(s) 96, 369, 508
BstX2I RGATCY 3 cut(s) 152, 256, 557
BstYI RGATCY 3 cut(s) 152, 256, 557
BstZ17I GTATAC 1 cut(s) 750
Bsu15I ATCGAT 1 cut(s) 626
BsuI GTATCC 1 cut(s) 116
BsuTUI ATCGAT 1 cut(s) 626
BtgZI GCGATG 3 cut(s) 300, 339, 444
BtsCI GGATG 2 cut(s) 358, 668
BtsIMutI CAGTG 1 cut(s) 732
Cac8I GCNNGC 1 cut(s) 18
CciI TCATGA 1 cut(s) 762
ClaI ATCGAT 1 cut(s) 626
CseI GACGC 2 cut(s) 431, 703
Csp6I GTAC 1 cut(s) 274
CviAII CATG 2 cut(s) 369, 763
CviJI RGCY 5 cut(s) 16, 123, 653, 723, 802
CviKI_1 RGCY 5 cut(s) 16, 123, 653, 723, 802
CviQI GTAC 1 cut(s) 274
DdeI CTNAG 4 cut(s) 119, 223, 724, 803
DpnI GATC 9 cut(s) 25, 148, 154, 221, 258, 478, 559, 625, 761
DpnII GATC 9 cut(s) 23, 146, 152, 219, 256, 476, 557, 623, 759
DrdI GACNNNNNNGTC 1 cut(s) 373
DseDI GACNNNNNNGTC 1 cut(s) 373
Eam1104I CTCTTC 6 cut(s) 33, 352, 417, 509, 553, 599
EarI CTCTTC 6 cut(s) 33, 352, 417, 509, 553, 599
Ecl136II GAGCTC 1 cut(s) 723
Eco24I GRGCYC 1 cut(s) 725
Eco31I GGTCTC 2 cut(s) 414, 506
Eco53kI GAGCTC 1 cut(s) 723
Eco88I CYCGRG 1 cut(s) 768
EcoICRI GAGCTC 1 cut(s) 723
EcoT22I ATGCAT 1 cut(s) 649
EcoT38I GRGCYC 1 cut(s) 725
Esp3I CGTCTC 3 cut(s) 402, 450, 490
FaeI CATG 2 cut(s) 372, 766
FaiI YATR 9 cut(s) 60, 196, 232, 266, 272, 370, 750, 764, 878
FaqI GGGAC 1 cut(s) 587
FatI CATG 2 cut(s) 368, 762
FblI GTMKAC 1 cut(s) 749
Fnu4HI GCNGC 1 cut(s) 580
FokI GGATG 2 cut(s) 345, 675
FriOI GRGCYC 1 cut(s) 725
Fsp4HI GCNGC 1 cut(s) 580
FspBI CTAG 1 cut(s) 260
GluI GCNGC 1 cut(s) 580
HapII CCGG 4 cut(s) 66, 109, 555, 698
HgaI GACGC 2 cut(s) 431, 703
Hin1I GRCGYC 2 cut(s) 423, 695
Hin1II CATG 2 cut(s) 372, 766
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 6 cut(s) 43, 323, 618, 688, 701, 844
HpaII CCGG 4 cut(s) 66, 109, 555, 698
HphI GGTGA 1 cut(s) 330
Hpy166II GTNNAC 1 cut(s) 750
Hpy188I TCNGA 6 cut(s) 157, 226, 476, 623, 693, 759
Hpy188III TCNNGA 5 cut(s) 150, 250, 555, 763, 826
Hpy8I GTNNAC 1 cut(s) 750
Hpy99I CGWCG 4 cut(s) 83, 397, 425, 697
HpyAV CCTTC 4 cut(s) 372, 448, 490, 767
HpyCH4III ACNGT 2 cut(s) 500, 532
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 2 cut(s) 647, 850
HpyF3I CTNAG 4 cut(s) 119, 223, 724, 803
HpySE526I ACGT 1 cut(s) 81
Hsp92I GRCGYC 2 cut(s) 423, 695
Hsp92II CATG 2 cut(s) 372, 766
Kpn2I TCCGGA 1 cut(s) 554
Kzo9I GATC 9 cut(s) 23, 146, 152, 219, 256, 476, 557, 623, 759
LmnI GCTCC 2 cut(s) 128, 587
LpnPI CCDG 9 cut(s) 79, 115, 122, 333, 556, 568, 711, 738, 811
Lsp1109I GCAGC 1 cut(s) 566
LweI GCATC 1 cut(s) 367
MaeI CTAG 1 cut(s) 260
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 336
MalI GATC 9 cut(s) 25, 148, 154, 221, 258, 478, 559, 625, 761
MboI GATC 9 cut(s) 23, 146, 152, 219, 256, 476, 557, 623, 759
MfeI CAATTG 1 cut(s) 815
MflI RGATCY 3 cut(s) 152, 256, 557
MhlI GDGCHC 1 cut(s) 725
MluCI AATT 6 cut(s) 61, 114, 175, 215, 669, 815
MlyI GAGTC 1 cut(s) 37
MmeI TCCRAC 4 cut(s) 230, 519, 716, 737
MnlI CCTC 6 cut(s) 466, 500, 556, 562, 822, 846
Mph1103I ATGCAT 1 cut(s) 649
MroI TCCGGA 1 cut(s) 554
MseI TTAA 1 cut(s) 11
MspI CCGG 4 cut(s) 66, 109, 555, 698
MunI CAATTG 1 cut(s) 815
Mva1269I GAATGC 1 cut(s) 649
NdeII GATC 9 cut(s) 23, 146, 152, 219, 256, 476, 557, 623, 759
NlaIII CATG 2 cut(s) 372, 766
NmuCI GTSAC 1 cut(s) 336
NsiI ATGCAT 1 cut(s) 649
NspV TTCGAA 2 cut(s) 179, 641
PagI TCATGA 1 cut(s) 762
PcsI WCGNNNNNNNCGW 5 cut(s) 176, 362, 371, 392, 401
PctI GAATGC 1 cut(s) 649
PfeI GAWTC 5 cut(s) 323, 618, 688, 701, 844
PflFI GACNNNGTC 1 cut(s) 370
PkrI GCNGC 1 cut(s) 581
Ple19I CGATCG 1 cut(s) 149
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
Psp124BI GAGCTC 1 cut(s) 725
PsuI RGATCY 3 cut(s) 152, 256, 557
PsyI GACNNNGTC 1 cut(s) 370
PvuI CGATCG 1 cut(s) 149
RsaI GTAC 1 cut(s) 275
RsaNI GTAC 1 cut(s) 274
SacI GAGCTC 1 cut(s) 725
SaqAI TTAA 1 cut(s) 11
SatI GCNGC 1 cut(s) 580
Sau3AI GATC 9 cut(s) 23, 146, 152, 219, 256, 476, 557, 623, 759
SchI GAGTC 1 cut(s) 37
SduI GDGCHC 1 cut(s) 725
SetI ASST 8 cut(s) 18, 84, 125, 265, 343, 725, 804, 838
SfaNI GCATC 1 cut(s) 367
SfuI TTCGAA 2 cut(s) 179, 641
Sse9I AATT 6 cut(s) 61, 114, 175, 215, 669, 815
SsiI CCGC 1 cut(s) 522
SspI AATATT 1 cut(s) 854
SspMI CTAG 1 cut(s) 260
SstI GAGCTC 1 cut(s) 725
TaaI ACNGT 2 cut(s) 500, 532
TaiI ACGT 1 cut(s) 84
TaqI TCGA 6 cut(s) 22, 149, 179, 365, 626, 641
TasI AATT 6 cut(s) 61, 114, 175, 215, 669, 815
TfiI GAWTC 5 cut(s) 323, 618, 688, 701, 844
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TscAI CASTG 1 cut(s) 732
TseFI GTSAC 1 cut(s) 336
TseI GCWGC 1 cut(s) 579
Tsp45I GTSAC 1 cut(s) 336
TspDTI ATGAA 2 cut(s) 102, 342
TspGWI ACGGA 4 cut(s) 108, 574, 729, 856
TspRI CASTG 1 cut(s) 732
Tth111I GACNNNGTC 1 cut(s) 370
XapI RAATTY 2 cut(s) 114, 175
XmiI GTMKAC 1 cut(s) 749
XspI CTAG 1 cut(s) 260
Zsp2I ATGCAT 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.