Rw2G024140

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0015319
Physical Location & Seq
Forward (+)
35568197 .. 35568988
792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G024140.1

Sequence Viewer

Length: 792 bp
ATGCTCCCACTAAAGCTGGTACGCTCTCTGGTCTTCGGAGGAACCATCAACAACAACCCTCTTCTTATGGACACCGACGACGACGACGACGACGAGGATCGCAATGTCGTCAAAACCCCATTGCTCCTTTTCCTCCCAACCAAAGAGCTCGTCACCGACACGTACAGACTCGCCACCATAGCCAGAGACATGGGCATGGACTTGCACCCAACCCCTTCTCTCTCCCACATCATTCTCTCACACCCGCCGCCGCCGCCGCCCCCATCGTCGTCGTCTCCGTCTCTAGGATCACCGTCCTCGTTTCCTTCAACATGGTCATCCACGTCCCTGTCGTCAACTTCTTCTCTGCCCGAGGACACAGTCCCCCTCCCTTTTCCTTCACTGATCGCAGCTCCGATTCCGCATCTCCGGGCCTTCGTCAAGATGTCCAGAGGTCTGTTCAAGCTGGTGTTCGCGCCGTCGGAGTGCATAGCCAGCGACGCCGCGAGTACCGAGAGCCATTGGAATTGCTGCTCGGCCTCGCTGTTCTCGCGGCTCGCCGGAGATAGAATGGACACAATGGAGGGGTTTTCGAGGGCTCTGGCCGGAGTTGGGTGGTCCCTTTTCAAGACTAAGGAGAACGGTGGTGGGAAATCGGTGTATTTGTTCAGGAAGGTTGATGTGAACAGGGTTCGGGCCGGGGAGTGTAGGATTCGGGAGCTGAGGTTGCCTGCATTGGATTTTAGGAATGCCCCTTTGAGGATTTTGCAGTACATTCTTCTTATGACGGATGACATCTTCTATCTGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

263

Amino Acids

28.88

Weight (kDa)

6.21

Isoelectric Point (pI)

52.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015319)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08770
fragaria_vesca FvH4_1g25250 FvH4_1g25250
malus_domestica MD15G1137000.v1.1 MD15G1137300.v1.1
prunus_persica Prupe.4G279900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0123171
rosa_multiflora Rmu_co8220114.1_g000001
rosa_roxburghii Rroxscaffold_2G00120860
rosa_rugosa Rorug02G0243600
rosa_samantha Rh2AG303100 Rh2BG311000 Rh2CG289400 Rh2DG327100
rosa_wichuraiana Rw2G024140 Rw2G024230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 455, 485, 532
AciI CCGC 8 cut(s) 245, 248, 251, 254, 257, 401, 483, 532
AclWI GGATC 2 cut(s) 105, 295
AcoI YGGCCR 1 cut(s) 582
AcyI GRCGYC 1 cut(s) 480
AfaI GTAC 4 cut(s) 21, 164, 490, 752
AfiI CCNNNNNNNGG 3 cut(s) 284, 591, 738
AflIII ACRYGT 1 cut(s) 159
AgsI TTSAA 3 cut(s) 309, 442, 607
AjiI CACGTC 1 cut(s) 324
AluBI AGCT 5 cut(s) 16, 148, 392, 445, 700
AluI AGCT 5 cut(s) 16, 148, 392, 445, 700
Alw21I GWGCWC 1 cut(s) 150
Alw26I GTCTC 3 cut(s) 180, 279, 285
AlwI GGATC 2 cut(s) 105, 295
Ama87I CYCGRG 1 cut(s) 350
AoxI GGCC 4 cut(s) 411, 516, 582, 675
ApeKI GCWGC 2 cut(s) 389, 510
ArsI GACNNNNNNTTYG 2 cut(s) 135, 167
AspLEI GCGC 1 cut(s) 457
AspS9I GGNCC 3 cut(s) 411, 597, 675
AsuC2I CCSGG 2 cut(s) 410, 679
AsuHPI GGTGA 2 cut(s) 145, 282
AvaI CYCGRG 1 cut(s) 350
AvaII GGWCC 1 cut(s) 597
BanII GRGCYC 2 cut(s) 150, 580
BbsI GAAGAC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 150
BbvCI CCTCAGC 1 cut(s) 701
BbvI GCAGC 2 cut(s) 401, 497
BccI CCATC 2 cut(s) 53, 271
BceAI ACGGC 1 cut(s) 442
BcnI CCSGG 2 cut(s) 410, 679
BcoDI GTCTC 3 cut(s) 180, 279, 285
BfaI CTAG 1 cut(s) 284
BisI GCNGC 8 cut(s) 248, 251, 254, 257, 390, 483, 511, 533
BlsI GCNGC 8 cut(s) 249, 252, 255, 258, 391, 484, 512, 534
Bme1390I CCNGG 2 cut(s) 410, 679
Bme18I GGWCC 1 cut(s) 597
BmeT110I CYCGRG 1 cut(s) 350
BmgBI CACGTC 1 cut(s) 324
BmgT120I GGNCC 3 cut(s) 411, 597, 675
BmiI GGNNCC 2 cut(s) 43, 599
BmrFI CCNGG 2 cut(s) 410, 679
BmsI GCATC 1 cut(s) 412
BpiI GAAGAC 1 cut(s) 25
Bpu10I CCTNAGC 1 cut(s) 701
BpuMI CCSGG 2 cut(s) 410, 679
BsaAI YACGTR 1 cut(s) 162
BsaHI GRCGYC 1 cut(s) 480
BsaJI CCNNGG 2 cut(s) 351, 678
BsaXI ACNNNNNCTCC 2 cut(s) 689, 719
Bsc4I CCNNNNNNNGG 3 cut(s) 284, 591, 738
Bse3DI GCAATG 2 cut(s) 109, 119
BseDI CCNNGG 2 cut(s) 351, 678
BseGI GGATG 2 cut(s) 317, 775
BseLI CCNNNNNNNGG 3 cut(s) 284, 591, 738
BseMI GCAATG 2 cut(s) 109, 119
BseMII CTCAG 1 cut(s) 692
BseXI GCAGC 2 cut(s) 401, 497
Bsh1236I CGCG 3 cut(s) 455, 485, 532
BshFI GGCC 4 cut(s) 413, 518, 584, 677
BsiHKAI GWGCWC 1 cut(s) 150
BsiHKCI CYCGRG 1 cut(s) 350
BsiSI CCGG 4 cut(s) 409, 540, 585, 678
BslFI GGGAC 3 cut(s) 310, 347, 583
BslI CCNNNNNNNGG 3 cut(s) 284, 591, 738
BsmAI GTCTC 3 cut(s) 180, 279, 285
BsmBI CGTCTC 2 cut(s) 279, 285
BsmFI GGGAC 3 cut(s) 310, 347, 583
BsmI GAATGC 1 cut(s) 733
BsnI GGCC 4 cut(s) 413, 518, 584, 677
BsoBI CYCGRG 1 cut(s) 350
Bsp1286I GDGCHC 2 cut(s) 150, 580
Bsp143I GATC 3 cut(s) 97, 287, 384
BspACI CCGC 8 cut(s) 245, 248, 251, 254, 257, 401, 483, 532
BspANI GGCC 4 cut(s) 413, 518, 584, 677
BspCNI CTCAG 1 cut(s) 693
BspFNI CGCG 3 cut(s) 455, 485, 532
BspLI GGNNCC 2 cut(s) 43, 599
BspPI GGATC 2 cut(s) 105, 295
BsrDI GCAATG 2 cut(s) 109, 119
BssECI CCNNGG 2 cut(s) 351, 678
BssMI GATC 3 cut(s) 97, 287, 384
BssNI GRCGYC 1 cut(s) 480
Bst4CI ACNGT 3 cut(s) 294, 361, 623
Bst6I CTCTTC 1 cut(s) 66
BstACI GRCGYC 1 cut(s) 480
BstBAI YACGTR 1 cut(s) 162
BstC8I GCNNGC 3 cut(s) 475, 537, 711
BstDEI CTNAG 2 cut(s) 612, 701
BstF5I GGATG 2 cut(s) 317, 775
BstFNI CGCG 3 cut(s) 455, 485, 532
BstHHI GCGC 1 cut(s) 457
BstKTI GATC 3 cut(s) 100, 290, 387
BstMAI GTCTC 3 cut(s) 180, 279, 285
BstMBI GATC 3 cut(s) 97, 287, 384
BstMWI GCNNNNNNNGC 7 cut(s) 179, 253, 256, 474, 479, 529, 706
BstSCI CCNGG 2 cut(s) 408, 677
BstUI CGCG 3 cut(s) 455, 485, 532
BstV1I GCAGC 2 cut(s) 401, 497
BstV2I GAAGAC 1 cut(s) 25
BstXI CCANNNNNNTGG 1 cut(s) 190
BsuRI GGCC 4 cut(s) 413, 518, 584, 677
BtrI CACGTC 1 cut(s) 324
BtsCI GGATG 2 cut(s) 317, 775
BtsIMutI CAGTG 1 cut(s) 380
Cac8I GCNNGC 3 cut(s) 475, 537, 711
CfoI GCGC 1 cut(s) 457
Cfr13I GGNCC 3 cut(s) 411, 597, 675
CseI GACGC 1 cut(s) 488
Csp6I GTAC 4 cut(s) 20, 163, 489, 751
CviAII CATG 4 cut(s) 190, 196, 312, 789
CviQI GTAC 4 cut(s) 20, 163, 489, 751
DdeI CTNAG 2 cut(s) 612, 701
DpnI GATC 3 cut(s) 99, 289, 386
DpnII GATC 3 cut(s) 97, 287, 384
EaeI YGGCCR 1 cut(s) 582
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Ecl136II GAGCTC 1 cut(s) 148
Eco24I GRGCYC 2 cut(s) 150, 580
Eco47I GGWCC 1 cut(s) 597
Eco53kI GAGCTC 1 cut(s) 148
Eco88I CYCGRG 1 cut(s) 350
EcoICRI GAGCTC 1 cut(s) 148
EcoT38I GRGCYC 2 cut(s) 150, 580
Esp3I CGTCTC 2 cut(s) 279, 285
FaeI CATG 4 cut(s) 193, 199, 315, 792
FaiI YATR 8 cut(s) 68, 179, 191, 197, 313, 470, 764, 790
FaqI GGGAC 3 cut(s) 310, 347, 583
FatI CATG 4 cut(s) 189, 195, 311, 788
FauI CCCGC 1 cut(s) 252
Fnu4HI GCNGC 8 cut(s) 248, 251, 254, 257, 390, 483, 511, 533
FokI GGATG 2 cut(s) 304, 782
FriOI GRGCYC 2 cut(s) 150, 580
Fsp4HI GCNGC 8 cut(s) 248, 251, 254, 257, 390, 483, 511, 533
FspBI CTAG 1 cut(s) 284
GlaI GCGC 1 cut(s) 456
GluI GCNGC 8 cut(s) 248, 251, 254, 257, 390, 483, 511, 533
HaeIII GGCC 4 cut(s) 413, 518, 584, 677
HapII CCGG 4 cut(s) 409, 540, 585, 678
HgaI GACGC 1 cut(s) 488
HhaI GCGC 1 cut(s) 457
Hin1I GRCGYC 1 cut(s) 480
Hin1II CATG 4 cut(s) 193, 199, 315, 792
Hin6I GCGC 1 cut(s) 455
HinP1I GCGC 1 cut(s) 455
HincII GTYRAC 1 cut(s) 336
HindII GTYRAC 1 cut(s) 336
HinfI GANTC 3 cut(s) 168, 397, 691
HpaII CCGG 4 cut(s) 409, 540, 585, 678
HphI GGTGA 2 cut(s) 145, 282
Hpy166II GTNNAC 2 cut(s) 336, 664
Hpy188I TCNGA 3 cut(s) 38, 396, 463
Hpy188III TCNNGA 5 cut(s) 421, 429, 607, 649, 695
Hpy8I GTNNAC 2 cut(s) 336, 664
HpyAV CCTTC 5 cut(s) 225, 315, 387, 424, 646
HpyCH4III ACNGT 3 cut(s) 294, 361, 623
HpyCH4IV ACGT 2 cut(s) 161, 323
HpyCH4V TGCA 4 cut(s) 205, 468, 713, 748
HpyF10VI GCNNNNNNNGC 7 cut(s) 179, 253, 256, 474, 479, 529, 706
HpyF3I CTNAG 2 cut(s) 612, 701
HpySE526I ACGT 2 cut(s) 161, 323
Hsp92I GRCGYC 1 cut(s) 480
Hsp92II CATG 4 cut(s) 193, 199, 315, 792
HspAI GCGC 1 cut(s) 455
Kzo9I GATC 3 cut(s) 97, 287, 384
LmnI GCTCC 4 cut(s) 9, 129, 397, 697
Lsp1109I GCAGC 2 cut(s) 401, 497
LweI GCATC 1 cut(s) 412
MaeI CTAG 1 cut(s) 284
MaeII ACGT 2 cut(s) 161, 323
MaeIII GTNAC 1 cut(s) 151
MalI GATC 3 cut(s) 99, 289, 386
MboI GATC 3 cut(s) 97, 287, 384
MboII GAAGA 5 cut(s) 25, 53, 333, 749, 769
MhlI GDGCHC 2 cut(s) 150, 580
MluCI AATT 1 cut(s) 505
MlyI GAGTC 1 cut(s) 162
MmeI TCCRAC 1 cut(s) 441
MslI CAYNNNNRTG 1 cut(s) 194
MspI CCGG 4 cut(s) 409, 540, 585, 678
MspR9I CCNGG 2 cut(s) 410, 679
Mva1269I GAATGC 1 cut(s) 733
MvnI CGCG 3 cut(s) 455, 485, 532
MwoI GCNNNNNNNGC 7 cut(s) 179, 253, 256, 474, 479, 529, 706
NciI CCSGG 2 cut(s) 410, 679
NdeII GATC 3 cut(s) 97, 287, 384
NlaIII CATG 4 cut(s) 193, 199, 315, 792
NlaIV GGNNCC 2 cut(s) 43, 599
NmeAIII GCCGAG 1 cut(s) 494
NmuCI GTSAC 1 cut(s) 151
PcsI WCGNNNNNNNCGW 5 cut(s) 84, 87, 90, 275, 329
PctI GAATGC 1 cut(s) 733
PfeI GAWTC 2 cut(s) 397, 691
PflFI GACNNNGTC 1 cut(s) 359
PkrI GCNGC 8 cut(s) 249, 252, 255, 258, 391, 484, 512, 534
PleI GAGTC 1 cut(s) 162
PpsI GAGTC 1 cut(s) 162
Ppu21I YACGTR 1 cut(s) 162
Psp124BI GAGCTC 1 cut(s) 150
PspN4I GGNNCC 2 cut(s) 43, 599
PspPI GGNCC 3 cut(s) 411, 597, 675
PsyI GACNNNGTC 1 cut(s) 359
RsaI GTAC 4 cut(s) 21, 164, 490, 752
RsaNI GTAC 4 cut(s) 20, 163, 489, 751
RseI CAYNNNNRTG 1 cut(s) 194
SacI GAGCTC 1 cut(s) 150
SatI GCNGC 8 cut(s) 248, 251, 254, 257, 390, 483, 511, 533
Sau3AI GATC 3 cut(s) 97, 287, 384
Sau96I GGNCC 3 cut(s) 411, 597, 675
SchI GAGTC 1 cut(s) 162
ScrFI CCNGG 2 cut(s) 410, 679
SduI GDGCHC 2 cut(s) 150, 580
SfaNI GCATC 1 cut(s) 412
SinI GGWCC 1 cut(s) 597
SmiMI CAYNNNNRTG 1 cut(s) 194
Sse9I AATT 1 cut(s) 505
SsiI CCGC 8 cut(s) 245, 248, 251, 254, 257, 401, 483, 532
SspMI CTAG 1 cut(s) 284
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 2 cut(s) 408, 677
TaaI ACNGT 3 cut(s) 294, 361, 623
TaiI ACGT 2 cut(s) 164, 326
TaqI TCGA 1 cut(s) 572
TasI AATT 1 cut(s) 505
TatI WGTACW 1 cut(s) 750
TauI GCSGC 6 cut(s) 250, 253, 256, 259, 485, 535
TfiI GAWTC 2 cut(s) 397, 691
TscAI CASTG 1 cut(s) 387
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 2 cut(s) 389, 510
Tsp45I GTSAC 1 cut(s) 151
TspGWI ACGGA 2 cut(s) 267, 782
TspRI CASTG 1 cut(s) 387
Tth111I GACNNNGTC 1 cut(s) 359
VpaK11BI GGWCC 1 cut(s) 597
XspI CTAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.