RchiOBHm_Chr2g0123171

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0015319
Physical Location & Seq
Forward (+)
36309109 .. 36310189
1081 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49549

Sequence Viewer

Length: 798 bp
ATGCTCCCACTAAAGCTGGTACGCTCTCTGGTCTTCGGAGGAACCATCAACAACAACCCTCTTCTTATGGACACCGACGACGAGGAGGAGGAGGATCGCAATGTCGTCAAAACCCCATTGCTCCTTTTCCTCCCAACCAAAGAGCTTGTCACCGACACGTACAGACTCGCCACCATAGCCAGAGACATGGGCATGGACTTGCACCCAACCCCTTCTCTCTCCCACATCATTCTCTCACACCCACCGCCGCCGCCGCCGCCGCCGCCGCCATCGTCTTCGTCTCCGTCTCTAGGATCACCGTCCTCGTTTCCTTCAACATGGTCATCCACGTCCCTGTCGTCAACTTCTTCTCTGCCCGAGGACACAGTCCCCCTCCCTTTTCCTTCACTGATCGCAGCTCCGATTCCGCATCTCCGGGCCTTCGTCAAGATGTCCAGAGGTCTGTTCAAGCTGGTGTTCGCGCCGTCGGAGTGCATAGCCACCGACGCCGCGAGTACCGAGAGCCATTGGAATTGCTGCTCGGCCTCGCTGTTCTCGCGGCTCGCCGGAGATAGAATGGACACAATGGAGGGGTTTTCGAGGGCTCTGGCCGGAGTTGGGTGGTCCCTTTTCAAGACTAAGGAGAACGGTGGTGGGAAATCGGTGTATTTGTTCAGGAAGGTTGATGTGAATAGGGTTCGGGCCGGGGAGTGTAGGATTCGGGAGCTGAGGTTGCCTGCATTGGATTTTAGGAATGCCCCTTTGAGGATTTTGCAGTACATTCTTCTTATGACGGATGACATCTTCTATCTGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

265

Amino Acids

29.11

Weight (kDa)

6.52

Isoelectric Point (pI)

57.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015319)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08770
fragaria_vesca FvH4_1g25250 FvH4_1g25250
malus_domestica MD15G1137000.v1.1 MD15G1137300.v1.1
prunus_persica Prupe.4G279900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0123171
rosa_multiflora Rmu_co8220114.1_g000001
rosa_roxburghii Rroxscaffold_2G00120860
rosa_rugosa Rorug02G0243600
rosa_samantha Rh2AG303100 Rh2BG311000 Rh2CG289400 Rh2DG327100
rosa_wichuraiana Rw2G024140 Rw2G024230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 461, 491, 538
AclWI GGATC 2 cut(s) 102, 301
AcoI YGGCCR 1 cut(s) 588
AcyI GRCGYC 1 cut(s) 486
AfaI GTAC 4 cut(s) 21, 161, 496, 758
AfiI CCNNNNNNNGG 3 cut(s) 290, 597, 744
AflIII ACRYGT 1 cut(s) 156
AgsI TTSAA 3 cut(s) 315, 448, 613
AjiI CACGTC 1 cut(s) 330
AluBI AGCT 5 cut(s) 16, 145, 398, 451, 706
AluI AGCT 5 cut(s) 16, 145, 398, 451, 706
Alw26I GTCTC 3 cut(s) 177, 285, 291
AlwI GGATC 2 cut(s) 102, 301
Ama87I CYCGRG 1 cut(s) 356
AoxI GGCC 4 cut(s) 417, 522, 588, 681
ApeKI GCWGC 2 cut(s) 395, 516
ArsI GACNNNNNNTTYG 2 cut(s) 132, 164
AspLEI GCGC 1 cut(s) 463
AspS9I GGNCC 3 cut(s) 417, 603, 681
AsuC2I CCSGG 2 cut(s) 416, 685
AsuHPI GGTGA 2 cut(s) 142, 288
AvaI CYCGRG 1 cut(s) 356
AvaII GGWCC 1 cut(s) 603
BanII GRGCYC 1 cut(s) 586
BbsI GAAGAC 2 cut(s) 25, 267
BbvCI CCTCAGC 1 cut(s) 707
BbvI GCAGC 2 cut(s) 407, 503
BccI CCATC 2 cut(s) 53, 277
BceAI ACGGC 1 cut(s) 448
BcnI CCSGG 2 cut(s) 416, 685
BcoDI GTCTC 3 cut(s) 177, 285, 291
BfaI CTAG 1 cut(s) 290
Bme1390I CCNGG 2 cut(s) 416, 685
Bme18I GGWCC 1 cut(s) 603
BmeT110I CYCGRG 1 cut(s) 356
BmgBI CACGTC 1 cut(s) 330
BmgT120I GGNCC 3 cut(s) 417, 603, 681
BmiI GGNNCC 2 cut(s) 43, 605
BmrFI CCNGG 2 cut(s) 416, 685
BmsI GCATC 1 cut(s) 418
BpiI GAAGAC 2 cut(s) 25, 267
Bpu10I CCTNAGC 1 cut(s) 707
BpuMI CCSGG 2 cut(s) 416, 685
BsaAI YACGTR 1 cut(s) 159
BsaHI GRCGYC 1 cut(s) 486
BsaJI CCNNGG 2 cut(s) 357, 684
BsaXI ACNNNNNCTCC 2 cut(s) 695, 725
Bsc4I CCNNNNNNNGG 3 cut(s) 290, 597, 744
Bse3DI GCAATG 2 cut(s) 106, 116
BseDI CCNNGG 2 cut(s) 357, 684
BseGI GGATG 2 cut(s) 323, 781
BseLI CCNNNNNNNGG 3 cut(s) 290, 597, 744
BseMI GCAATG 2 cut(s) 106, 116
BseMII CTCAG 1 cut(s) 698
BseRI GAGGAG 3 cut(s) 98, 101, 104
BseXI GCAGC 2 cut(s) 407, 503
Bsh1236I CGCG 3 cut(s) 461, 491, 538
BshFI GGCC 4 cut(s) 419, 524, 590, 683
BsiHKCI CYCGRG 1 cut(s) 356
BsiSI CCGG 4 cut(s) 415, 546, 591, 684
BslFI GGGAC 3 cut(s) 316, 353, 589
BslI CCNNNNNNNGG 3 cut(s) 290, 597, 744
BsmAI GTCTC 3 cut(s) 177, 285, 291
BsmBI CGTCTC 2 cut(s) 285, 291
BsmFI GGGAC 3 cut(s) 316, 353, 589
BsmI GAATGC 1 cut(s) 739
BsnI GGCC 4 cut(s) 419, 524, 590, 683
BsoBI CYCGRG 1 cut(s) 356
Bsp1286I GDGCHC 1 cut(s) 586
Bsp143I GATC 3 cut(s) 94, 293, 390
BspANI GGCC 4 cut(s) 419, 524, 590, 683
BspCNI CTCAG 1 cut(s) 699
BspFNI CGCG 3 cut(s) 461, 491, 538
BspLI GGNNCC 2 cut(s) 43, 605
BspPI GGATC 2 cut(s) 102, 301
BsrDI GCAATG 2 cut(s) 106, 116
BssECI CCNNGG 2 cut(s) 357, 684
BssMI GATC 3 cut(s) 94, 293, 390
BssNI GRCGYC 1 cut(s) 486
Bst4CI ACNGT 3 cut(s) 300, 367, 629
Bst6I CTCTTC 1 cut(s) 66
BstACI GRCGYC 1 cut(s) 486
BstBAI YACGTR 1 cut(s) 159
BstC8I GCNNGC 2 cut(s) 543, 717
BstDEI CTNAG 2 cut(s) 618, 707
BstF5I GGATG 2 cut(s) 323, 781
BstFNI CGCG 3 cut(s) 461, 491, 538
BstHHI GCGC 1 cut(s) 463
BstKTI GATC 3 cut(s) 97, 296, 393
BstMAI GTCTC 3 cut(s) 177, 285, 291
BstMBI GATC 3 cut(s) 94, 293, 390
BstMWI GCNNNNNNNGC 9 cut(s) 176, 253, 256, 259, 262, 265, 485, 535, 712
BstSCI CCNGG 2 cut(s) 414, 683
BstUI CGCG 3 cut(s) 461, 491, 538
BstV1I GCAGC 2 cut(s) 407, 503
BstV2I GAAGAC 2 cut(s) 25, 267
BstXI CCANNNNNNTGG 1 cut(s) 187
BsuRI GGCC 4 cut(s) 419, 524, 590, 683
BtrI CACGTC 1 cut(s) 330
BtsCI GGATG 2 cut(s) 323, 781
BtsIMutI CAGTG 1 cut(s) 386
Cac8I GCNNGC 2 cut(s) 543, 717
CfoI GCGC 1 cut(s) 463
Cfr13I GGNCC 3 cut(s) 417, 603, 681
CseI GACGC 1 cut(s) 494
Csp6I GTAC 4 cut(s) 20, 160, 495, 757
CviAII CATG 4 cut(s) 187, 193, 318, 795
CviQI GTAC 4 cut(s) 20, 160, 495, 757
DdeI CTNAG 2 cut(s) 618, 707
DpnI GATC 3 cut(s) 96, 295, 392
DpnII GATC 3 cut(s) 94, 293, 390
EaeI YGGCCR 1 cut(s) 588
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Eco24I GRGCYC 1 cut(s) 586
Eco47I GGWCC 1 cut(s) 603
Eco88I CYCGRG 1 cut(s) 356
EcoT38I GRGCYC 1 cut(s) 586
Esp3I CGTCTC 2 cut(s) 285, 291
FaeI CATG 4 cut(s) 190, 196, 321, 798
FaiI YATR 8 cut(s) 68, 176, 188, 194, 319, 476, 770, 796
FaqI GGGAC 3 cut(s) 316, 353, 589
FatI CATG 4 cut(s) 186, 192, 317, 794
FokI GGATG 2 cut(s) 310, 788
FriOI GRGCYC 1 cut(s) 586
FspBI CTAG 1 cut(s) 290
GlaI GCGC 1 cut(s) 462
HaeIII GGCC 4 cut(s) 419, 524, 590, 683
HapII CCGG 4 cut(s) 415, 546, 591, 684
HgaI GACGC 1 cut(s) 494
HhaI GCGC 1 cut(s) 463
Hin1I GRCGYC 1 cut(s) 486
Hin1II CATG 4 cut(s) 190, 196, 321, 798
Hin6I GCGC 1 cut(s) 461
HinP1I GCGC 1 cut(s) 461
HincII GTYRAC 1 cut(s) 342
HindII GTYRAC 1 cut(s) 342
HinfI GANTC 3 cut(s) 165, 403, 697
HpaII CCGG 4 cut(s) 415, 546, 591, 684
HphI GGTGA 2 cut(s) 142, 288
Hpy166II GTNNAC 1 cut(s) 342
Hpy188I TCNGA 3 cut(s) 38, 402, 469
Hpy188III TCNNGA 5 cut(s) 427, 435, 613, 655, 701
Hpy8I GTNNAC 1 cut(s) 342
Hpy99I CGWCG 4 cut(s) 80, 83, 469, 488
HpyAV CCTTC 5 cut(s) 222, 321, 393, 430, 652
HpyCH4III ACNGT 3 cut(s) 300, 367, 629
HpyCH4IV ACGT 2 cut(s) 158, 329
HpyCH4V TGCA 4 cut(s) 202, 474, 719, 754
HpyF10VI GCNNNNNNNGC 9 cut(s) 176, 253, 256, 259, 262, 265, 485, 535, 712
HpyF3I CTNAG 2 cut(s) 618, 707
HpySE526I ACGT 2 cut(s) 158, 329
Hsp92I GRCGYC 1 cut(s) 486
Hsp92II CATG 4 cut(s) 190, 196, 321, 798
HspAI GCGC 1 cut(s) 461
Kzo9I GATC 3 cut(s) 94, 293, 390
LmnI GCTCC 4 cut(s) 9, 126, 403, 703
Lsp1109I GCAGC 2 cut(s) 407, 503
LweI GCATC 1 cut(s) 418
MaeI CTAG 1 cut(s) 290
MaeII ACGT 2 cut(s) 158, 329
MaeIII GTNAC 1 cut(s) 148
MalI GATC 3 cut(s) 96, 295, 392
MboI GATC 3 cut(s) 94, 293, 390
MboII GAAGA 6 cut(s) 25, 53, 267, 339, 755, 775
MhlI GDGCHC 1 cut(s) 586
MluCI AATT 1 cut(s) 511
MlyI GAGTC 1 cut(s) 159
MmeI TCCRAC 1 cut(s) 447
MslI CAYNNNNRTG 1 cut(s) 191
MspI CCGG 4 cut(s) 415, 546, 591, 684
MspR9I CCNGG 2 cut(s) 416, 685
Mva1269I GAATGC 1 cut(s) 739
MvnI CGCG 3 cut(s) 461, 491, 538
MwoI GCNNNNNNNGC 9 cut(s) 176, 253, 256, 259, 262, 265, 485, 535, 712
NciI CCSGG 2 cut(s) 416, 685
NdeII GATC 3 cut(s) 94, 293, 390
NlaIII CATG 4 cut(s) 190, 196, 321, 798
NlaIV GGNNCC 2 cut(s) 43, 605
NmeAIII GCCGAG 1 cut(s) 500
NmuCI GTSAC 1 cut(s) 148
PcsI WCGNNNNNNNCGW 1 cut(s) 335
PctI GAATGC 1 cut(s) 739
PfeI GAWTC 2 cut(s) 403, 697
PflFI GACNNNGTC 1 cut(s) 365
PleI GAGTC 1 cut(s) 159
PpsI GAGTC 1 cut(s) 159
Ppu21I YACGTR 1 cut(s) 159
PspN4I GGNNCC 2 cut(s) 43, 605
PspPI GGNCC 3 cut(s) 417, 603, 681
PsyI GACNNNGTC 1 cut(s) 365
RsaI GTAC 4 cut(s) 21, 161, 496, 758
RsaNI GTAC 4 cut(s) 20, 160, 495, 757
RseI CAYNNNNRTG 1 cut(s) 191
Sau3AI GATC 3 cut(s) 94, 293, 390
Sau96I GGNCC 3 cut(s) 417, 603, 681
SchI GAGTC 1 cut(s) 159
ScrFI CCNGG 2 cut(s) 416, 685
SduI GDGCHC 1 cut(s) 586
SfaNI GCATC 1 cut(s) 418
SinI GGWCC 1 cut(s) 603
SmiMI CAYNNNNRTG 1 cut(s) 191
Sse9I AATT 1 cut(s) 511
SspMI CTAG 1 cut(s) 290
StyD4I CCNGG 2 cut(s) 414, 683
TaaI ACNGT 3 cut(s) 300, 367, 629
TaiI ACGT 2 cut(s) 161, 332
TaqI TCGA 1 cut(s) 578
TasI AATT 1 cut(s) 511
TatI WGTACW 1 cut(s) 756
TauI GCSGC 9 cut(s) 250, 253, 256, 259, 262, 265, 268, 491, 541
TfiI GAWTC 2 cut(s) 403, 697
TscAI CASTG 1 cut(s) 393
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 2 cut(s) 395, 516
Tsp45I GTSAC 1 cut(s) 148
TspGWI ACGGA 2 cut(s) 273, 788
TspRI CASTG 1 cut(s) 393
Tth111I GACNNNGTC 1 cut(s) 365
VpaK11BI GGWCC 1 cut(s) 603
XspI CTAG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.