Rroxscaffold_2G00120860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0015319
Physical Location & Seq
Reverse (-)
53301137 .. 53306575
5439 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00120860.1

Sequence Viewer

Length: 852 bp
ATGGAGTACTTGTTGGATGATAACAAAAGAGAGAAAGGTAAAGGAGGAAGAAGAAGAAGAAAGATGCTCCCACTAAAGCTGGTACGCTCTCTGGTCTTGGGAGAAACCATCAACAACAACCCTCTTCATATGGACACCGACGAGGAGGAGGAGGAGGATCGCAATGTCGTCAAAACCCCATTGCTCTTTTTCCTCCCAACCAAAGAGCTCGTCACCGACACATACAGACTCGCCACCATAGCCAGAGACATGGGCATGGACTTGCACCCAACCCCTTCTCTCTCCCACATCATTCTCTCGCACCCACCACCGCCGCCGCCGCCATCGACGTCGTCTCCGTCTTTAGGATCACCTTCCTCGTTTCCTTCAACATGGTCATCCACGTCCCTGTCATCAACTTCTTCTCTGCCCGAGGACACAGCCCCCCTCCCCTTTCCTTCGCTGATCGCAGCTCCGATTGCGCATCTCCGGGCCTTCGTCAAGATGTCCAGAGGTCTGTTCAAGCTGGTGTTCGCGCCGTCGGAGTGCATAGCCAGTGACGCCGCGAGTACCGAGAGCCATTGGAATTGCTGCTCGGCCTCGCTGTTCTCGCGGCTCACCGGAGATAGAATGGACACAATGGAGGGGTTTTCGAGGGCTCTGGCCGGAGTTGGGTGGTCCCTTTTCAAGACTAAGGAGAACGGTGGTGGGAAATCGGCGTATTTGTTCAGGAAGGTTGATGTGAACAGGGTTCGGGCCGGGGAGTGTAGGATCCGGGAGCTGAGGTTGCCTGCATTGGATTTTAGGAATGCCCCTTTGAGGATTTTGCAGTACATTCTTCTTATGACGGATGACATCTTCTATCTGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

283

Amino Acids

31.46

Weight (kDa)

8.66

Isoelectric Point (pI)

60.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015319)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08770
fragaria_vesca FvH4_1g25250 FvH4_1g25250
malus_domestica MD15G1137000.v1.1 MD15G1137300.v1.1
prunus_persica Prupe.4G279900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0123171
rosa_multiflora Rmu_co8220114.1_g000001
rosa_roxburghii Rroxscaffold_2G00120860
rosa_rugosa Rorug02G0243600
rosa_samantha Rh2AG303100 Rh2BG311000 Rh2CG289400 Rh2DG327100
rosa_wichuraiana Rw2G024140 Rw2G024230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 332
Acc16I TGCGCA 1 cut(s) 462
AccII CGCG 3 cut(s) 515, 545, 592
AciI CCGC 6 cut(s) 311, 314, 317, 320, 543, 592
AclWI GGATC 4 cut(s) 165, 355, 745, 758
AcoI YGGCCR 1 cut(s) 642
AcyI GRCGYC 2 cut(s) 329, 540
AfaI GTAC 4 cut(s) 8, 84, 550, 812
AfiI CCNNNNNNNGG 3 cut(s) 344, 651, 798
AgsI TTSAA 3 cut(s) 369, 502, 667
AjiI CACGTC 1 cut(s) 384
AluBI AGCT 5 cut(s) 79, 208, 452, 505, 760
AluI AGCT 5 cut(s) 79, 208, 452, 505, 760
Alw21I GWGCWC 1 cut(s) 210
Alw26I GTCTC 2 cut(s) 240, 339
AlwI GGATC 4 cut(s) 165, 355, 745, 758
Ama87I CYCGRG 1 cut(s) 410
AoxI GGCC 4 cut(s) 471, 576, 642, 735
ApeKI GCWGC 2 cut(s) 449, 570
ArsI GACNNNNNNTTYG 2 cut(s) 195, 227
AspLEI GCGC 2 cut(s) 463, 517
AspS9I GGNCC 3 cut(s) 471, 657, 735
AsuC2I CCSGG 3 cut(s) 470, 739, 755
AsuHPI GGTGA 3 cut(s) 205, 342, 589
AvaI CYCGRG 1 cut(s) 410
AvaII GGWCC 1 cut(s) 657
BamHI GGATCC 1 cut(s) 750
BanII GRGCYC 2 cut(s) 210, 640
Bbv12I GWGCWC 1 cut(s) 210
BbvCI CCTCAGC 1 cut(s) 761
BbvI GCAGC 2 cut(s) 461, 557
BccI CCATC 2 cut(s) 116, 331
BceAI ACGGC 1 cut(s) 502
BcnI CCSGG 3 cut(s) 470, 739, 755
BcoDI GTCTC 2 cut(s) 240, 339
BisI GCNGC 7 cut(s) 314, 317, 320, 450, 543, 571, 593
BlsI GCNGC 7 cut(s) 315, 318, 321, 451, 544, 572, 594
BmcAI AGTACT 1 cut(s) 8
Bme1390I CCNGG 3 cut(s) 470, 739, 755
Bme18I GGWCC 1 cut(s) 657
BmeT110I CYCGRG 1 cut(s) 410
BmgBI CACGTC 1 cut(s) 384
BmgT120I GGNCC 3 cut(s) 471, 657, 735
BmiI GGNNCC 2 cut(s) 659, 752
BmrFI CCNGG 3 cut(s) 470, 739, 755
BmsI GCATC 2 cut(s) 54, 472
Bpu10I CCTNAGC 1 cut(s) 761
BpuMI CCSGG 3 cut(s) 470, 739, 755
BsaHI GRCGYC 2 cut(s) 329, 540
BsaJI CCNNGG 2 cut(s) 411, 738
BsaWI WCCGGW 1 cut(s) 599
BsaXI ACNNNNNCTCC 5 cut(s) 26, 319, 349, 749, 779
Bsc4I CCNNNNNNNGG 3 cut(s) 344, 651, 798
Bse1I ACTGG 1 cut(s) 534
Bse3DI GCAATG 2 cut(s) 169, 179
BseDI CCNNGG 2 cut(s) 411, 738
BseGI GGATG 3 cut(s) 22, 377, 835
BseLI CCNNNNNNNGG 3 cut(s) 344, 651, 798
BseMI GCAATG 2 cut(s) 169, 179
BseMII CTCAG 1 cut(s) 752
BseNI ACTGG 1 cut(s) 534
BseRI GAGGAG 4 cut(s) 158, 161, 164, 167
BseXI GCAGC 2 cut(s) 461, 557
Bsh1236I CGCG 3 cut(s) 515, 545, 592
BshFI GGCC 4 cut(s) 473, 578, 644, 737
BsiHKAI GWGCWC 1 cut(s) 210
BsiHKCI CYCGRG 1 cut(s) 410
BsiSI CCGG 5 cut(s) 469, 600, 645, 738, 754
BslFI GGGAC 2 cut(s) 370, 643
BslI CCNNNNNNNGG 3 cut(s) 344, 651, 798
BsmAI GTCTC 2 cut(s) 240, 339
BsmBI CGTCTC 1 cut(s) 339
BsmFI GGGAC 2 cut(s) 370, 643
BsmI GAATGC 1 cut(s) 793
BsnI GGCC 4 cut(s) 473, 578, 644, 737
BsoBI CYCGRG 1 cut(s) 410
Bsp1286I GDGCHC 2 cut(s) 210, 640
Bsp143I GATC 4 cut(s) 157, 347, 444, 750
BspACI CCGC 6 cut(s) 311, 314, 317, 320, 543, 592
BspANI GGCC 4 cut(s) 473, 578, 644, 737
BspCNI CTCAG 1 cut(s) 753
BspFNI CGCG 3 cut(s) 515, 545, 592
BspLI GGNNCC 2 cut(s) 659, 752
BspPI GGATC 4 cut(s) 165, 355, 745, 758
BsrDI GCAATG 2 cut(s) 169, 179
BsrI ACTGG 1 cut(s) 534
BssECI CCNNGG 2 cut(s) 411, 738
BssMI GATC 4 cut(s) 157, 347, 444, 750
BssNI GRCGYC 2 cut(s) 329, 540
Bst4CI ACNGT 1 cut(s) 683
Bst6I CTCTTC 1 cut(s) 129
BstACI GRCGYC 2 cut(s) 329, 540
BstC8I GCNNGC 1 cut(s) 771
BstDEI CTNAG 2 cut(s) 672, 761
BstF5I GGATG 3 cut(s) 22, 377, 835
BstFNI CGCG 3 cut(s) 515, 545, 592
BstHHI GCGC 2 cut(s) 463, 517
BstKTI GATC 4 cut(s) 160, 350, 447, 753
BstMAI GTCTC 2 cut(s) 240, 339
BstMBI GATC 4 cut(s) 157, 347, 444, 750
BstMWI GCNNNNNNNGC 6 cut(s) 239, 319, 458, 539, 589, 766
BstSCI CCNGG 3 cut(s) 468, 737, 753
BstUI CGCG 3 cut(s) 515, 545, 592
BstV1I GCAGC 2 cut(s) 461, 557
BstX2I RGATCY 1 cut(s) 750
BstXI CCANNNNNNTGG 1 cut(s) 250
BstYI RGATCY 1 cut(s) 750
BsuRI GGCC 4 cut(s) 473, 578, 644, 737
BtrI CACGTC 1 cut(s) 384
BtsCI GGATG 3 cut(s) 22, 377, 835
BtsIMutI CAGTG 1 cut(s) 541
Cac8I GCNNGC 1 cut(s) 771
CfoI GCGC 2 cut(s) 463, 517
Cfr13I GGNCC 3 cut(s) 471, 657, 735
CseI GACGC 1 cut(s) 548
Csp6I GTAC 4 cut(s) 7, 83, 549, 811
CviAII CATG 4 cut(s) 250, 256, 372, 849
CviQI GTAC 4 cut(s) 7, 83, 549, 811
DdeI CTNAG 2 cut(s) 672, 761
DpnI GATC 4 cut(s) 159, 349, 446, 752
DpnII GATC 4 cut(s) 157, 347, 444, 750
EaeI YGGCCR 1 cut(s) 642
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
Ecl136II GAGCTC 1 cut(s) 208
Eco24I GRGCYC 2 cut(s) 210, 640
Eco47I GGWCC 1 cut(s) 657
Eco53kI GAGCTC 1 cut(s) 208
Eco88I CYCGRG 1 cut(s) 410
EcoICRI GAGCTC 1 cut(s) 208
EcoT38I GRGCYC 2 cut(s) 210, 640
Esp3I CGTCTC 1 cut(s) 339
FaeI CATG 4 cut(s) 253, 259, 375, 852
FaqI GGGAC 2 cut(s) 370, 643
FatI CATG 4 cut(s) 249, 255, 371, 848
FauNDI CATATG 1 cut(s) 129
Fnu4HI GCNGC 7 cut(s) 314, 317, 320, 450, 543, 571, 593
FokI GGATG 3 cut(s) 29, 364, 842
FriOI GRGCYC 2 cut(s) 210, 640
Fsp4HI GCNGC 7 cut(s) 314, 317, 320, 450, 543, 571, 593
FspI TGCGCA 1 cut(s) 462
GlaI GCGC 2 cut(s) 462, 516
GluI GCNGC 7 cut(s) 314, 317, 320, 450, 543, 571, 593
HaeIII GGCC 4 cut(s) 473, 578, 644, 737
HapII CCGG 5 cut(s) 469, 600, 645, 738, 754
HgaI GACGC 1 cut(s) 548
HhaI GCGC 2 cut(s) 463, 517
Hin1I GRCGYC 2 cut(s) 329, 540
Hin1II CATG 4 cut(s) 253, 259, 375, 852
Hin6I GCGC 2 cut(s) 461, 515
HinP1I GCGC 2 cut(s) 461, 515
HinfI GANTC 1 cut(s) 228
HpaII CCGG 5 cut(s) 469, 600, 645, 738, 754
HphI GGTGA 3 cut(s) 205, 342, 589
Hpy166II GTNNAC 1 cut(s) 724
Hpy188I TCNGA 2 cut(s) 456, 523
Hpy188III TCNNGA 4 cut(s) 481, 489, 667, 709
Hpy8I GTNNAC 1 cut(s) 724
Hpy99I CGWCG 4 cut(s) 143, 331, 334, 523
HpyAV CCTTC 6 cut(s) 285, 363, 375, 447, 484, 706
HpyCH4III ACNGT 1 cut(s) 683
HpyCH4IV ACGT 2 cut(s) 329, 383
HpyCH4V TGCA 4 cut(s) 265, 528, 773, 808
HpyF10VI GCNNNNNNNGC 6 cut(s) 239, 319, 458, 539, 589, 766
HpyF3I CTNAG 2 cut(s) 672, 761
HpySE526I ACGT 2 cut(s) 329, 383
Hsp92I GRCGYC 2 cut(s) 329, 540
Hsp92II CATG 4 cut(s) 253, 259, 375, 852
HspAI GCGC 2 cut(s) 461, 515
Kzo9I GATC 4 cut(s) 157, 347, 444, 750
LmnI GCTCC 3 cut(s) 72, 457, 757
Lsp1109I GCAGC 2 cut(s) 461, 557
LweI GCATC 2 cut(s) 54, 472
MaeII ACGT 2 cut(s) 329, 383
MaeIII GTNAC 2 cut(s) 211, 536
MalI GATC 4 cut(s) 159, 349, 446, 752
MboI GATC 4 cut(s) 157, 347, 444, 750
MboII GAAGA 8 cut(s) 60, 63, 66, 69, 116, 393, 809, 829
MflI RGATCY 1 cut(s) 750
MhlI GDGCHC 2 cut(s) 210, 640
MluCI AATT 1 cut(s) 565
MlyI GAGTC 1 cut(s) 222
MmeI TCCRAC 1 cut(s) 501
MslI CAYNNNNRTG 1 cut(s) 254
MspI CCGG 5 cut(s) 469, 600, 645, 738, 754
MspR9I CCNGG 3 cut(s) 470, 739, 755
Mva1269I GAATGC 1 cut(s) 793
MvnI CGCG 3 cut(s) 515, 545, 592
MwoI GCNNNNNNNGC 6 cut(s) 239, 319, 458, 539, 589, 766
NciI CCSGG 3 cut(s) 470, 739, 755
NdeI CATATG 1 cut(s) 129
NdeII GATC 4 cut(s) 157, 347, 444, 750
NlaIII CATG 4 cut(s) 253, 259, 375, 852
NlaIV GGNNCC 2 cut(s) 659, 752
NmeAIII GCCGAG 1 cut(s) 554
NmuCI GTSAC 2 cut(s) 211, 536
NsbI TGCGCA 1 cut(s) 462
PcsI WCGNNNNNNNCGW 1 cut(s) 335
PctI GAATGC 1 cut(s) 793
PflFI GACNNNGTC 1 cut(s) 331
PfoI TCCNGGA 1 cut(s) 753
PkrI GCNGC 7 cut(s) 315, 318, 321, 451, 544, 572, 594
PleI GAGTC 1 cut(s) 222
PpsI GAGTC 1 cut(s) 222
Psp124BI GAGCTC 1 cut(s) 210
PspN4I GGNNCC 2 cut(s) 659, 752
PspPI GGNCC 3 cut(s) 471, 657, 735
PsuI RGATCY 1 cut(s) 750
PsyI GACNNNGTC 1 cut(s) 331
RsaI GTAC 4 cut(s) 8, 84, 550, 812
RsaNI GTAC 4 cut(s) 7, 83, 549, 811
RseI CAYNNNNRTG 1 cut(s) 254
SacI GAGCTC 1 cut(s) 210
SatI GCNGC 7 cut(s) 314, 317, 320, 450, 543, 571, 593
Sau3AI GATC 4 cut(s) 157, 347, 444, 750
Sau96I GGNCC 3 cut(s) 471, 657, 735
ScaI AGTACT 1 cut(s) 8
SchI GAGTC 1 cut(s) 222
ScrFI CCNGG 3 cut(s) 470, 739, 755
SduI GDGCHC 2 cut(s) 210, 640
SfaNI GCATC 2 cut(s) 54, 472
SinI GGWCC 1 cut(s) 657
SmiMI CAYNNNNRTG 1 cut(s) 254
Sse9I AATT 1 cut(s) 565
SsiI CCGC 6 cut(s) 311, 314, 317, 320, 543, 592
SstI GAGCTC 1 cut(s) 210
StyD4I CCNGG 3 cut(s) 468, 737, 753
TaaI ACNGT 1 cut(s) 683
TaiI ACGT 2 cut(s) 332, 386
TaqI TCGA 2 cut(s) 326, 632
TasI AATT 1 cut(s) 565
TatI WGTACW 2 cut(s) 6, 810
TauI GCSGC 5 cut(s) 316, 319, 322, 545, 595
TscAI CASTG 1 cut(s) 541
TseFI GTSAC 2 cut(s) 211, 536
TseI GCWGC 2 cut(s) 449, 570
Tsp45I GTSAC 2 cut(s) 211, 536
TspDTI ATGAA 1 cut(s) 116
TspGWI ACGGA 2 cut(s) 327, 842
TspRI CASTG 1 cut(s) 541
Tth111I GACNNNGTC 1 cut(s) 331
VpaK11BI GGWCC 1 cut(s) 657
ZraI GACGTC 1 cut(s) 330
ZrmI AGTACT 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.