Prupe.4G279900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0015319
Physical Location & Seq
Forward (+)
23631955 .. 23636753
4799 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G279900.1

Sequence Viewer

Length: 894 bp
ATGCTCCCGCTAAAGCTGGTACGCTCTCTAGTCTTTGGAGAAACCATCAACAACAACCCACTCCTTCTCCCCCCAAATCAACATGACGAAGATCCCCACCACAACAATGACGATGGCTACGATGCTGACTCTAATGCCAAAGATGGCCATCACAAACCAACAGAAGGAAGAAGCAAAACCAGCAAATCGAGAACCCCATTTCTCCTCTTCCTCCCAACCAAAGAGCTTGTCGCAGACACATACAGACTGGCCACCATAGCCAGAGACATGGGCATGGATTTGCACCCAACCCCATCTCTCTCCCACATCATTCTTTCATACCCACCACCACCATCATCATCGTCATCATCTCCATCTTCATCATCACCATCAACATATTCATGGTCATCGTCATCACTCTCATCAACATCTTTGCCCGACGACACTGTTCCCCTCCCTTTCCCTTCTCTCTCCACAGCCTCCATTTCCCATCTTCGCGCCTTTGTCAAGCTCTCCAAAGGCCTGTTCAAGCTGGTATTTGTGCTCTCCAATTGTAAAGCCACTGAGGCAACTAGTGAAAGCAATTGGAATTGCTCATCAATGTCGCTGTTTTCGCGGCTCACCGGAGACCGAATTGACACAATGGAAGGGTTTTCTCGGGCTTTGGCCGGACTGGGGTGGACCCTTTTCAAGACTAAAGAAAACCCATCAGCGGATTCGGGCCATAGGCGAGTTTGCGGTGGCAAATCGGTGTATCTGTTTCGGAAGGTCGATACAAACAGAGTTAGGGCTTGCACTGCTGGGGAGTGTAGGGTTCGGGAGTTGAGATTGCCCCCATTGGATTTTAGTAATGCCCCTTTGAGGATTTTGCAATACATTCTCCTTATGACGGATGATATCTTCTATCTCGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

298

Amino Acids

32.72

Weight (kDa)

8.55

Isoelectric Point (pI)

52.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015319)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08770
fragaria_vesca FvH4_1g25250 FvH4_1g25250
malus_domestica MD15G1137000.v1.1 MD15G1137300.v1.1
prunus_persica Prupe.4G279900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0123171
rosa_multiflora Rmu_co8220114.1_g000001
rosa_roxburghii Rroxscaffold_2G00120860
rosa_rugosa Rorug02G0243600
rosa_samantha Rh2AG303100 Rh2BG311000 Rh2CG289400 Rh2DG327100
rosa_wichuraiana Rw2G024140 Rw2G024230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 477, 595
AciI CCGC 4 cut(s) 8, 595, 692, 717
AclWI GGATC 1 cut(s) 86
AcoI YGGCCR 3 cut(s) 145, 249, 645
AfaI GTAC 1 cut(s) 21
AfiI CCNNNNNNNGG 5 cut(s) 164, 654, 691, 840, 868
AgsI TTSAA 2 cut(s) 508, 670
AhlI ACTAGT 1 cut(s) 551
AjuI GAANNNNNNNTTGG 2 cut(s) 488, 520
AluBI AGCT 4 cut(s) 16, 226, 490, 511
AluI AGCT 4 cut(s) 16, 226, 490, 511
Alw21I GWGCWC 1 cut(s) 525
Alw26I GTCTC 2 cut(s) 258, 600
AlwI GGATC 1 cut(s) 86
Ama87I CYCGRG 1 cut(s) 636
AoxI GGCC 5 cut(s) 145, 249, 499, 645, 700
ArsI GACNNNNNNTTYG 2 cut(s) 213, 245
AspLEI GCGC 1 cut(s) 479
AspS9I GGNCC 2 cut(s) 660, 700
AsuHPI GGTGA 2 cut(s) 357, 592
AvaI CYCGRG 1 cut(s) 636
AvaII GGWCC 1 cut(s) 660
BalI TGGCCA 2 cut(s) 147, 251
Bbv12I GWGCWC 1 cut(s) 525
BcoDI GTCTC 2 cut(s) 258, 600
BcuI ACTAGT 1 cut(s) 551
BfaI CTAG 2 cut(s) 29, 552
BglI GCCNNNNNGGC 1 cut(s) 545
BisI GCNGC 1 cut(s) 596
BlsI GCNGC 1 cut(s) 597
Bme18I GGWCC 1 cut(s) 660
BmeT110I CYCGRG 1 cut(s) 636
BmgT120I GGNCC 2 cut(s) 660, 700
BmiI GGNNCC 1 cut(s) 662
BmrI ACTGGG 1 cut(s) 662
BmsI GCATC 1 cut(s) 112
BmuI ACTGGG 1 cut(s) 662
BsaBI GATNNNNATC 1 cut(s) 147
BsaI GGTCTC 1 cut(s) 600
BsaWI WCCGGW 1 cut(s) 602
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bsc4I CCNNNNNNNGG 5 cut(s) 164, 654, 691, 840, 868
Bse1I ACTGG 2 cut(s) 252, 657
Bse8I GATNNNNATC 1 cut(s) 147
BseGI GGATG 1 cut(s) 877
BseJI GATNNNNATC 1 cut(s) 147
BseLI CCNNNNNNNGG 5 cut(s) 164, 654, 691, 840, 868
BseMII CTCAG 1 cut(s) 534
BseNI ACTGG 2 cut(s) 252, 657
BseRI GAGGAG 1 cut(s) 194
BseYI CCCAGC 1 cut(s) 779
Bsh1236I CGCG 2 cut(s) 477, 595
BshFI GGCC 5 cut(s) 147, 251, 501, 647, 702
BsiHKAI GWGCWC 1 cut(s) 525
BsiHKCI CYCGRG 1 cut(s) 636
BsiSI CCGG 2 cut(s) 603, 648
BslI CCNNNNNNNGG 5 cut(s) 164, 654, 691, 840, 868
BsmAI GTCTC 2 cut(s) 258, 600
BsnI GGCC 5 cut(s) 147, 251, 501, 647, 702
Bso31I GGTCTC 1 cut(s) 600
BsoBI CYCGRG 1 cut(s) 636
Bsp1286I GDGCHC 1 cut(s) 525
Bsp143I GATC 1 cut(s) 91
BspACI CCGC 4 cut(s) 8, 595, 692, 717
BspANI GGCC 5 cut(s) 147, 251, 501, 647, 702
BspCNI CTCAG 1 cut(s) 535
BspFNI CGCG 2 cut(s) 477, 595
BspLI GGNNCC 1 cut(s) 662
BspPI GGATC 1 cut(s) 86
BspTNI GGTCTC 1 cut(s) 600
BsrI ACTGG 2 cut(s) 252, 657
BssMI GATC 1 cut(s) 91
Bst4CI ACNGT 1 cut(s) 427
Bst6I CTCTTC 1 cut(s) 212
BstC8I GCNNGC 1 cut(s) 772
BstDEI CTNAG 1 cut(s) 543
BstF5I GGATG 1 cut(s) 877
BstFNI CGCG 2 cut(s) 477, 595
BstHHI GCGC 1 cut(s) 479
BstKTI GATC 1 cut(s) 94
BstMAI GTCTC 2 cut(s) 258, 600
BstMBI GATC 1 cut(s) 91
BstMWI GCNNNNNNNGC 5 cut(s) 180, 257, 545, 592, 776
BstUI CGCG 2 cut(s) 477, 595
BstX2I RGATCY 1 cut(s) 91
BstXI CCANNNNNNTGG 1 cut(s) 268
BstYI RGATCY 1 cut(s) 91
BsuRI GGCC 5 cut(s) 147, 251, 501, 647, 702
BtsCI GGATG 1 cut(s) 877
BtsI GCAGTG 1 cut(s) 774
BtsIMutI CAGTG 3 cut(s) 423, 540, 774
Cac8I GCNNGC 1 cut(s) 772
CfoI GCGC 1 cut(s) 479
Cfr13I GGNCC 2 cut(s) 660, 700
Csp6I GTAC 1 cut(s) 20
CviAII CATG 4 cut(s) 83, 268, 274, 381
CviQI GTAC 1 cut(s) 20
DdeI CTNAG 1 cut(s) 543
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
EaeI YGGCCR 3 cut(s) 145, 249, 645
Eam1104I CTCTTC 1 cut(s) 212
EarI CTCTTC 1 cut(s) 212
Eco147I AGGCCT 1 cut(s) 501
Eco31I GGTCTC 1 cut(s) 600
Eco32I GATATC 1 cut(s) 877
Eco47I GGWCC 1 cut(s) 660
Eco88I CYCGRG 1 cut(s) 636
EcoRV GATATC 1 cut(s) 877
FaeI CATG 4 cut(s) 86, 271, 277, 384
FatI CATG 4 cut(s) 82, 267, 273, 380
FauI CCCGC 1 cut(s) 15
Fnu4HI GCNGC 1 cut(s) 596
FokI GGATG 1 cut(s) 884
Fsp4HI GCNGC 1 cut(s) 596
FspBI CTAG 2 cut(s) 29, 552
GlaI GCGC 1 cut(s) 478
GluI GCNGC 1 cut(s) 596
GsaI CCCAGC 1 cut(s) 783
HaeIII GGCC 5 cut(s) 147, 251, 501, 647, 702
HapII CCGG 2 cut(s) 603, 648
HhaI GCGC 1 cut(s) 479
Hin1II CATG 4 cut(s) 86, 271, 277, 384
Hin6I GCGC 1 cut(s) 477
HinP1I GCGC 1 cut(s) 477
HinfI GANTC 2 cut(s) 128, 695
HpaII CCGG 2 cut(s) 603, 648
HphI GGTGA 2 cut(s) 357, 592
Hpy166II GTNNAC 1 cut(s) 660
Hpy188I TCNGA 1 cut(s) 744
Hpy188III TCNNGA 3 cut(s) 189, 670, 797
Hpy8I GTNNAC 1 cut(s) 660
Hpy99I CGWCG 1 cut(s) 422
HpyAV CCTTC 5 cut(s) 74, 158, 453, 620, 739
HpyCH4III ACNGT 1 cut(s) 427
HpyCH4V TGCA 3 cut(s) 283, 774, 850
HpyF10VI GCNNNNNNNGC 5 cut(s) 180, 257, 545, 592, 776
HpyF3I CTNAG 1 cut(s) 543
Hsp92II CATG 4 cut(s) 86, 271, 277, 384
HspAI GCGC 1 cut(s) 477
Kzo9I GATC 1 cut(s) 91
LmnI GCTCC 1 cut(s) 9
LweI GCATC 1 cut(s) 112
MaeI CTAG 2 cut(s) 29, 552
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MboII GAAGA 6 cut(s) 101, 180, 199, 348, 464, 871
MfeI CAATTG 2 cut(s) 529, 562
MflI RGATCY 1 cut(s) 91
MhlI GDGCHC 1 cut(s) 525
MlsI TGGCCA 2 cut(s) 147, 251
MluCI AATT 4 cut(s) 529, 562, 568, 612
MluNI TGGCCA 2 cut(s) 147, 251
MlyI GAGTC 1 cut(s) 122
MnlI CCTC 6 cut(s) 215, 221, 443, 469, 538, 834
Mox20I TGGCCA 2 cut(s) 147, 251
MscI TGGCCA 2 cut(s) 147, 251
MslI CAYNNNNRTG 3 cut(s) 105, 272, 379
Msp20I TGGCCA 2 cut(s) 147, 251
MspA1I CMGCKG 1 cut(s) 692
MspI CCGG 2 cut(s) 603, 648
MunI CAATTG 2 cut(s) 529, 562
MvnI CGCG 2 cut(s) 477, 595
MwoI GCNNNNNNNGC 5 cut(s) 180, 257, 545, 592, 776
NdeII GATC 1 cut(s) 91
NlaIII CATG 4 cut(s) 86, 271, 277, 384
NlaIV GGNNCC 1 cut(s) 662
PceI AGGCCT 1 cut(s) 501
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PfeI GAWTC 1 cut(s) 695
PkrI GCNGC 1 cut(s) 597
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
PspFI CCCAGC 1 cut(s) 779
PspN4I GGNNCC 1 cut(s) 662
PspPI GGNCC 2 cut(s) 660, 700
PsuI RGATCY 1 cut(s) 91
RsaI GTAC 1 cut(s) 21
RsaNI GTAC 1 cut(s) 20
RseI CAYNNNNRTG 3 cut(s) 105, 272, 379
SatI GCNGC 1 cut(s) 596
Sau3AI GATC 1 cut(s) 91
Sau96I GGNCC 2 cut(s) 660, 700
SchI GAGTC 1 cut(s) 122
SduI GDGCHC 1 cut(s) 525
SetI ASST 5 cut(s) 18, 228, 492, 513, 750
SfaNI GCATC 1 cut(s) 112
SinI GGWCC 1 cut(s) 660
SmiMI CAYNNNNRTG 3 cut(s) 105, 272, 379
SpeI ACTAGT 1 cut(s) 551
Sse9I AATT 4 cut(s) 529, 562, 568, 612
SseBI AGGCCT 1 cut(s) 501
SsiI CCGC 4 cut(s) 8, 595, 692, 717
SspMI CTAG 2 cut(s) 29, 552
StuI AGGCCT 1 cut(s) 501
TaaI ACNGT 1 cut(s) 427
TaqI TCGA 2 cut(s) 188, 750
TaqII GACCGA 1 cut(s) 624
TasI AATT 4 cut(s) 529, 562, 568, 612
TauI GCSGC 1 cut(s) 598
TfiI GAWTC 1 cut(s) 695
TscAI CASTG 3 cut(s) 430, 547, 781
TspDTI ATGAA 3 cut(s) 306, 348, 369
TspGWI ACGGA 1 cut(s) 884
TspRI CASTG 3 cut(s) 430, 547, 781
VpaK11BI GGWCC 1 cut(s) 660
XspI CTAG 2 cut(s) 29, 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.