MD15G1137000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0015319
Physical Location & Seq
Forward (+)
10043291 .. 10043761
471 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1137000.v1.1.491

Sequence Viewer

Length: 471 bp
ATGGGCATGGACTTGCATCCAACCCCATCTCTCTCCCACATCATTCTCTCCTTCCCGCCTCCGCTACCGTCCTCCTCCTCATCTCCCTCTACAGCATCACCGTCCTCATTTCCATCGTCGTGGTCCTCATCGTCGCTGTCGTCAACGTCTTCACCCGACGACGCGGTTCCCCTCCCCTTCCCCTGTCTCTCCGCCGCCCCAATTTCCCATGTTCGCGCATTTGTCAAGCTCTCCAAAGGCCTTTTCAAGCTGGTTTTTGTGCGCTCCGATTGCAAACCCAGTGATGCAAATAGCGTTGGCGGTCAAAGCAATTGGAATTGCAGCTCAATGTCGCTGCTTTTGCGGCTCACCGGTGACAGAATTGATACAATGGAAGGGTTTTCCCGGGCTTTGGCGGGACTGGGATGGACCCATTTCAAGACCAAGGAAAACCCAGCAACGGATTCGAGGGACAGGAGACATTATCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

16.74

Weight (kDa)

8.96

Isoelectric Point (pI)

71.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015319)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08770
fragaria_vesca FvH4_1g25250 FvH4_1g25250
malus_domestica MD15G1137000.v1.1 MD15G1137300.v1.1
prunus_persica Prupe.4G279900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0123171
rosa_multiflora Rmu_co8220114.1_g000001
rosa_roxburghii Rroxscaffold_2G00120860
rosa_rugosa Rorug02G0243600
rosa_samantha Rh2AG303100 Rh2BG311000 Rh2CG289400 Rh2DG327100
rosa_wichuraiana Rw2G024140 Rw2G024230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 164, 216
AciI CCGC 8 cut(s) 56, 62, 164, 192, 195, 300, 343, 395
AfiI CCNNNNNNNGG 2 cut(s) 391, 439
AgeI ACCGGT 1 cut(s) 350
AgsI TTSAA 2 cut(s) 247, 418
AjuI GAANNNNNNNTTGG 2 cut(s) 227, 259
AluBI AGCT 3 cut(s) 229, 250, 324
AluI AGCT 3 cut(s) 229, 250, 324
Alw26I GTCTC 2 cut(s) 191, 451
Ama87I CYCGRG 1 cut(s) 384
AoxI GGCC 1 cut(s) 238
ApeKI GCWGC 2 cut(s) 321, 334
AsiGI ACCGGT 1 cut(s) 350
AspLEI GCGC 2 cut(s) 218, 264
AspS9I GGNCC 2 cut(s) 123, 408
AsuC2I CCSGG 2 cut(s) 385, 386
AsuHPI GGTGA 4 cut(s) 90, 144, 340, 365
AvaI CYCGRG 1 cut(s) 384
AvaII GGWCC 2 cut(s) 123, 408
BbsI GAAGAC 1 cut(s) 141
BbvI GCAGC 2 cut(s) 321, 333
BccI CCATC 3 cut(s) 34, 121, 399
BcgI CGANNNNNNTGC 2 cut(s) 426, 460
BcnI CCSGG 2 cut(s) 385, 386
BcoDI GTCTC 2 cut(s) 191, 451
BfmI CTRYAG 1 cut(s) 90
BisI GCNGC 4 cut(s) 195, 322, 335, 344
BlsI GCNGC 4 cut(s) 196, 323, 336, 345
Bme1390I CCNGG 2 cut(s) 385, 386
Bme18I GGWCC 2 cut(s) 123, 408
BmeT110I CYCGRG 1 cut(s) 384
BmgT120I GGNCC 2 cut(s) 123, 408
BmiI GGNNCC 2 cut(s) 168, 410
BmrFI CCNGG 2 cut(s) 385, 386
BmrI ACTGGG 2 cut(s) 273, 410
BmsI GCATC 3 cut(s) 25, 104, 274
BmuI ACTGGG 2 cut(s) 273, 410
BpiI GAAGAC 1 cut(s) 141
BpuMI CCSGG 2 cut(s) 385, 386
BsaJI CCNNGG 2 cut(s) 384, 423
BsaWI WCCGGW 1 cut(s) 350
Bsc4I CCNNNNNNNGG 2 cut(s) 391, 439
Bse118I RCCGGY 1 cut(s) 350
Bse1I ACTGG 2 cut(s) 279, 405
BseDI CCNNGG 2 cut(s) 384, 423
BseGI GGATG 2 cut(s) 16, 410
BseLI CCNNNNNNNGG 2 cut(s) 391, 439
BseNI ACTGG 2 cut(s) 279, 405
BseRI GAGGAG 2 cut(s) 64, 67
BseXI GCAGC 2 cut(s) 321, 333
BseYI CCCAGC 1 cut(s) 433
Bsh1236I CGCG 2 cut(s) 164, 216
BshFI GGCC 1 cut(s) 240
BshTI ACCGGT 1 cut(s) 350
BsiHKCI CYCGRG 1 cut(s) 384
BsiSI CCGG 2 cut(s) 351, 385
BslFI GGGAC 2 cut(s) 411, 464
BslI CCNNNNNNNGG 2 cut(s) 391, 439
BsmAI GTCTC 2 cut(s) 191, 451
BsmFI GGGAC 2 cut(s) 411, 464
BsnI GGCC 1 cut(s) 240
BsoBI CYCGRG 1 cut(s) 384
BspACI CCGC 8 cut(s) 56, 62, 164, 192, 195, 300, 343, 395
BspANI GGCC 1 cut(s) 240
BspFNI CGCG 2 cut(s) 164, 216
BspLI GGNNCC 2 cut(s) 168, 410
BsrFI RCCGGY 1 cut(s) 350
BsrI ACTGG 2 cut(s) 279, 405
BssAI RCCGGY 1 cut(s) 350
BssECI CCNNGG 2 cut(s) 384, 423
BssT1I CCWWGG 1 cut(s) 423
Bst4CI ACNGT 2 cut(s) 69, 102
BstF5I GGATG 2 cut(s) 16, 410
BstFNI CGCG 2 cut(s) 164, 216
BstHHI GCGC 2 cut(s) 218, 264
BstMAI GTCTC 2 cut(s) 191, 451
BstMWI GCNNNNNNNGC 4 cut(s) 270, 306, 340, 343
BstSCI CCNGG 2 cut(s) 383, 384
BstSFI CTRYAG 1 cut(s) 90
BstUI CGCG 2 cut(s) 164, 216
BstV1I GCAGC 2 cut(s) 321, 333
BstV2I GAAGAC 1 cut(s) 141
BstXI CCANNNNNNTGG 1 cut(s) 120
BsuRI GGCC 1 cut(s) 240
BtsCI GGATG 2 cut(s) 16, 410
BtsIMutI CAGTG 1 cut(s) 286
CfoI GCGC 2 cut(s) 218, 264
Cfr10I RCCGGY 1 cut(s) 350
Cfr13I GGNCC 2 cut(s) 123, 408
Cfr9I CCCGGG 1 cut(s) 384
CseI GACGC 1 cut(s) 170
CspAI ACCGGT 1 cut(s) 350
CviAII CATG 2 cut(s) 7, 209
CviJI RGCY 6 cut(s) 229, 240, 250, 324, 346, 389
CviKI_1 RGCY 6 cut(s) 229, 240, 250, 324, 346, 389
EciI GGCGGA 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 423
Eco147I AGGCCT 1 cut(s) 240
Eco47I GGWCC 2 cut(s) 123, 408
Eco88I CYCGRG 1 cut(s) 384
EcoT14I CCWWGG 1 cut(s) 423
ErhI CCWWGG 1 cut(s) 423
FaeI CATG 2 cut(s) 10, 212
FaiI YATR 2 cut(s) 8, 210
FaqI GGGAC 2 cut(s) 411, 464
FatI CATG 2 cut(s) 6, 208
FauI CCCGC 2 cut(s) 63, 388
Fnu4HI GCNGC 4 cut(s) 195, 322, 335, 344
FokI GGATG 2 cut(s) 3, 417
Fsp4HI GCNGC 4 cut(s) 195, 322, 335, 344
GlaI GCGC 2 cut(s) 217, 263
GluI GCNGC 4 cut(s) 195, 322, 335, 344
GsaI CCCAGC 1 cut(s) 437
HaeIII GGCC 1 cut(s) 240
HapII CCGG 2 cut(s) 351, 385
HgaI GACGC 1 cut(s) 170
HhaI GCGC 2 cut(s) 218, 264
Hin1II CATG 2 cut(s) 10, 212
Hin6I GCGC 2 cut(s) 216, 262
HinP1I GCGC 2 cut(s) 216, 262
HincII GTYRAC 1 cut(s) 144
HindII GTYRAC 1 cut(s) 144
HinfI GANTC 1 cut(s) 443
HpaII CCGG 2 cut(s) 351, 385
HphI GGTGA 4 cut(s) 90, 144, 340, 365
Hpy166II GTNNAC 1 cut(s) 144
Hpy188I TCNGA 1 cut(s) 268
Hpy188III TCNNGA 1 cut(s) 418
Hpy8I GTNNAC 1 cut(s) 144
Hpy99I CGWCG 4 cut(s) 121, 136, 161, 164
HpyAV CCTTC 3 cut(s) 61, 187, 368
HpyCH4III ACNGT 2 cut(s) 69, 102
HpyCH4IV ACGT 1 cut(s) 146
HpyCH4V TGCA 4 cut(s) 16, 273, 287, 321
HpyF10VI GCNNNNNNNGC 4 cut(s) 270, 306, 340, 343
HpySE526I ACGT 1 cut(s) 146
Hsp92II CATG 2 cut(s) 10, 212
HspAI GCGC 2 cut(s) 216, 262
LmnI GCTCC 1 cut(s) 269
LpnPI CCDG 8 cut(s) 196, 236, 292, 364, 386, 398, 439, 447
Lsp1109I GCAGC 2 cut(s) 321, 333
LweI GCATC 3 cut(s) 25, 104, 274
MaeII ACGT 1 cut(s) 146
MaeIII GTNAC 1 cut(s) 353
MboII GAAGA 1 cut(s) 141
MfeI CAATTG 1 cut(s) 310
MluCI AATT 4 cut(s) 201, 310, 316, 360
MmeI TCCRAC 1 cut(s) 44
MnlI CCTC 9 cut(s) 69, 82, 85, 88, 97, 115, 136, 182, 441
MslI CAYNNNNRTG 1 cut(s) 118
MspI CCGG 2 cut(s) 351, 385
MspR9I CCNGG 2 cut(s) 385, 386
MunI CAATTG 1 cut(s) 310
MvnI CGCG 2 cut(s) 164, 216
MwoI GCNNNNNNNGC 4 cut(s) 270, 306, 340, 343
NciI CCSGG 2 cut(s) 385, 386
NlaIII CATG 2 cut(s) 10, 212
NlaIV GGNNCC 2 cut(s) 168, 410
NmuCI GTSAC 1 cut(s) 353
PceI AGGCCT 1 cut(s) 240
PcsI WCGNNNNNNNCGW 1 cut(s) 137
PfeI GAWTC 1 cut(s) 443
PinAI ACCGGT 1 cut(s) 350
PkrI GCNGC 4 cut(s) 196, 323, 336, 345
PspFI CCCAGC 1 cut(s) 433
PspN4I GGNNCC 2 cut(s) 168, 410
PspPI GGNCC 2 cut(s) 123, 408
RseI CAYNNNNRTG 1 cut(s) 118
SatI GCNGC 4 cut(s) 195, 322, 335, 344
Sau96I GGNCC 2 cut(s) 123, 408
ScrFI CCNGG 2 cut(s) 385, 386
SetI ASST 4 cut(s) 149, 231, 252, 326
SfaNI GCATC 3 cut(s) 25, 104, 274
SfcI CTRYAG 1 cut(s) 90
SgrAI CRCCGGYG 1 cut(s) 350
SinI GGWCC 2 cut(s) 123, 408
SmaI CCCGGG 1 cut(s) 386
SmiMI CAYNNNNRTG 1 cut(s) 118
Sse9I AATT 4 cut(s) 201, 310, 316, 360
SseBI AGGCCT 1 cut(s) 240
SsiI CCGC 8 cut(s) 56, 62, 164, 192, 195, 300, 343, 395
StuI AGGCCT 1 cut(s) 240
StyD4I CCNGG 2 cut(s) 383, 384
StyI CCWWGG 1 cut(s) 423
TaaI ACNGT 2 cut(s) 69, 102
TaiI ACGT 1 cut(s) 149
TaqI TCGA 1 cut(s) 446
TasI AATT 4 cut(s) 201, 310, 316, 360
TauI GCSGC 2 cut(s) 197, 346
TfiI GAWTC 1 cut(s) 443
TscAI CASTG 1 cut(s) 286
TseFI GTSAC 1 cut(s) 353
TseI GCWGC 2 cut(s) 321, 334
Tsp45I GTSAC 1 cut(s) 353
TspGWI ACGGA 1 cut(s) 455
TspMI CCCGGG 1 cut(s) 384
TspRI CASTG 1 cut(s) 286
VpaK11BI GGWCC 2 cut(s) 123, 408
XmaI CCCGGG 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.