Rh2DG327100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0015319
Physical Location & Seq
Forward (+)
41276237 .. 41277550
1314 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG327100.1

Sequence Viewer

Length: 801 bp
ATGCTCCCACTAAAGCTGGTACGCTCTCTGGTCTTCGGAGGAACCATCAACAACAACCCTCTTCTTATGGACACCGACGAGGAGGAGGAGGAGGAGGAGGATCGCAATGTCGTCAAAACCCCATTGCTCCTTTTCCTCCCAACCAAAGAGCTCGTCACCGACACGTACAGACTCGCCACCATAGCCAGAGACATGGGCATGGACTTGCACCCAACCCCTTCTCTCTCCCACATCATTCTCTCACACCCACCGCCGCCGCCGCCGCCGCCGCCATCGTCATCGTCTCCGTCTTTAGGATCACCGTCCTCGTTTCCTTCAACATGGTCATCCACGTCCCTGTCGTCAACTTCTTCTCTGCCCGAGGACACAGTCCCCCTCCCTTTTCCTTCACTGATCGCAGCTCCGATTCCGCATCTCCGGGCCTTCGTCAAGATGTCCAGAGGTCTGTTCAAGCTGGTGTTCGCGCCGTCGGAGTGCATAGCCAGTGACGCCGCGAGTACCGAGAGCCATTGGAATTGCTGCTCGGCTTCGCTGTTTTCGCGGCTCGCCGGAGATAGAATGGACACAATGGAGGGGTTTTCGAGGGCTCTGGCCGGAGTTGGGTGGTCCCTTTTCAAGACTAAGGAGAACGGTGGTGGGAAACCGGTGTATTTGTTCAGGAAGGTTGATGTGAACAGGGTTCGGCCCGGGGAGTGTAGGATTCGGGAGCTGAGGTTGCCTGCATTGGATTTTAGGAATGCCCCCTTGAGGATTTTGCAGTACATTCTTCTTATGACGGATGACATCTTCTATCTGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

266

Amino Acids

29.31

Weight (kDa)

5.98

Isoelectric Point (pI)

61.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015319)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08770
fragaria_vesca FvH4_1g25250 FvH4_1g25250
malus_domestica MD15G1137000.v1.1 MD15G1137300.v1.1
prunus_persica Prupe.4G279900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0123171
rosa_multiflora Rmu_co8220114.1_g000001
rosa_roxburghii Rroxscaffold_2G00120860
rosa_rugosa Rorug02G0243600
rosa_samantha Rh2AG303100 Rh2BG311000 Rh2CG289400 Rh2DG327100
rosa_wichuraiana Rw2G024140 Rw2G024230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 464, 494, 541
AclWI GGATC 2 cut(s) 108, 304
AcoI YGGCCR 1 cut(s) 591
AcyI GRCGYC 1 cut(s) 489
AfaI GTAC 4 cut(s) 21, 167, 499, 761
AfiI CCNNNNNNNGG 3 cut(s) 293, 600, 747
AflIII ACRYGT 1 cut(s) 162
AgeI ACCGGT 1 cut(s) 643
AgsI TTSAA 3 cut(s) 318, 451, 616
AjiI CACGTC 1 cut(s) 333
AluBI AGCT 5 cut(s) 16, 151, 401, 454, 709
AluI AGCT 5 cut(s) 16, 151, 401, 454, 709
Alw21I GWGCWC 1 cut(s) 153
Alw26I GTCTC 2 cut(s) 183, 288
AlwI GGATC 2 cut(s) 108, 304
Ama87I CYCGRG 2 cut(s) 359, 686
AoxI GGCC 3 cut(s) 420, 591, 683
ApeKI GCWGC 2 cut(s) 398, 519
ArsI GACNNNNNNTTYG 2 cut(s) 138, 170
AsiGI ACCGGT 1 cut(s) 643
AspLEI GCGC 1 cut(s) 466
AspS9I GGNCC 3 cut(s) 420, 606, 684
AsuC2I CCSGG 3 cut(s) 419, 687, 688
AsuHPI GGTGA 2 cut(s) 148, 291
AvaI CYCGRG 2 cut(s) 359, 686
AvaII GGWCC 1 cut(s) 606
BanII GRGCYC 2 cut(s) 153, 589
BbsI GAAGAC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 153
BbvCI CCTCAGC 1 cut(s) 710
BbvI GCAGC 2 cut(s) 410, 506
BccI CCATC 2 cut(s) 53, 280
BceAI ACGGC 1 cut(s) 451
BcnI CCSGG 3 cut(s) 419, 687, 688
BcoDI GTCTC 2 cut(s) 183, 288
Bme1390I CCNGG 3 cut(s) 419, 687, 688
Bme18I GGWCC 1 cut(s) 606
BmeT110I CYCGRG 2 cut(s) 359, 686
BmgBI CACGTC 1 cut(s) 333
BmgT120I GGNCC 3 cut(s) 420, 606, 684
BmiI GGNNCC 2 cut(s) 43, 608
BmrFI CCNGG 3 cut(s) 419, 687, 688
BmsI GCATC 1 cut(s) 421
BpiI GAAGAC 1 cut(s) 25
Bpu10I CCTNAGC 1 cut(s) 710
BpuEI CTTGAG 1 cut(s) 766
BpuMI CCSGG 3 cut(s) 419, 687, 688
BsaAI YACGTR 1 cut(s) 165
BsaHI GRCGYC 1 cut(s) 489
BsaJI CCNNGG 3 cut(s) 360, 686, 687
BsaWI WCCGGW 1 cut(s) 643
BsaXI ACNNNNNCTCC 2 cut(s) 698, 728
Bsc4I CCNNNNNNNGG 3 cut(s) 293, 600, 747
Bse118I RCCGGY 1 cut(s) 643
Bse1I ACTGG 1 cut(s) 483
Bse3DI GCAATG 2 cut(s) 112, 122
BseDI CCNNGG 3 cut(s) 360, 686, 687
BseGI GGATG 2 cut(s) 326, 784
BseLI CCNNNNNNNGG 3 cut(s) 293, 600, 747
BseMI GCAATG 2 cut(s) 112, 122
BseMII CTCAG 1 cut(s) 701
BseNI ACTGG 1 cut(s) 483
BseRI GAGGAG 6 cut(s) 95, 98, 101, 104, 107, 110
BseXI GCAGC 2 cut(s) 410, 506
Bsh1236I CGCG 3 cut(s) 464, 494, 541
BshFI GGCC 3 cut(s) 422, 593, 685
BshTI ACCGGT 1 cut(s) 643
BsiHKAI GWGCWC 1 cut(s) 153
BsiHKCI CYCGRG 2 cut(s) 359, 686
BsiSI CCGG 5 cut(s) 418, 549, 594, 644, 687
BslFI GGGAC 3 cut(s) 319, 356, 592
BslI CCNNNNNNNGG 3 cut(s) 293, 600, 747
BsmAI GTCTC 2 cut(s) 183, 288
BsmBI CGTCTC 1 cut(s) 288
BsmFI GGGAC 3 cut(s) 319, 356, 592
BsmI GAATGC 1 cut(s) 742
BsnI GGCC 3 cut(s) 422, 593, 685
BsoBI CYCGRG 2 cut(s) 359, 686
Bsp1286I GDGCHC 2 cut(s) 153, 589
Bsp143I GATC 3 cut(s) 100, 296, 393
BspANI GGCC 3 cut(s) 422, 593, 685
BspCNI CTCAG 1 cut(s) 702
BspFNI CGCG 3 cut(s) 464, 494, 541
BspLI GGNNCC 2 cut(s) 43, 608
BspPI GGATC 2 cut(s) 108, 304
BsrDI GCAATG 2 cut(s) 112, 122
BsrFI RCCGGY 1 cut(s) 643
BsrI ACTGG 1 cut(s) 483
BssAI RCCGGY 1 cut(s) 643
BssECI CCNNGG 3 cut(s) 360, 686, 687
BssMI GATC 3 cut(s) 100, 296, 393
BssNI GRCGYC 1 cut(s) 489
Bst4CI ACNGT 3 cut(s) 303, 370, 632
Bst6I CTCTTC 1 cut(s) 66
BstACI GRCGYC 1 cut(s) 489
BstBAI YACGTR 1 cut(s) 165
BstC8I GCNNGC 2 cut(s) 546, 720
BstDEI CTNAG 2 cut(s) 621, 710
BstF5I GGATG 2 cut(s) 326, 784
BstFNI CGCG 3 cut(s) 464, 494, 541
BstHHI GCGC 1 cut(s) 466
BstKTI GATC 3 cut(s) 103, 299, 396
BstMAI GTCTC 2 cut(s) 183, 288
BstMBI GATC 3 cut(s) 100, 296, 393
BstMWI GCNNNNNNNGC 8 cut(s) 182, 259, 262, 265, 268, 488, 538, 715
BstSCI CCNGG 3 cut(s) 417, 685, 686
BstUI CGCG 3 cut(s) 464, 494, 541
BstV1I GCAGC 2 cut(s) 410, 506
BstV2I GAAGAC 1 cut(s) 25
BstXI CCANNNNNNTGG 1 cut(s) 193
BsuRI GGCC 3 cut(s) 422, 593, 685
BtrI CACGTC 1 cut(s) 333
BtsCI GGATG 2 cut(s) 326, 784
BtsIMutI CAGTG 2 cut(s) 389, 490
Cac8I GCNNGC 2 cut(s) 546, 720
CfoI GCGC 1 cut(s) 466
Cfr10I RCCGGY 1 cut(s) 643
Cfr13I GGNCC 3 cut(s) 420, 606, 684
Cfr9I CCCGGG 1 cut(s) 686
CseI GACGC 1 cut(s) 497
Csp6I GTAC 4 cut(s) 20, 166, 498, 760
CspAI ACCGGT 1 cut(s) 643
CviAII CATG 4 cut(s) 193, 199, 321, 798
CviQI GTAC 4 cut(s) 20, 166, 498, 760
DdeI CTNAG 2 cut(s) 621, 710
DpnI GATC 3 cut(s) 102, 298, 395
DpnII GATC 3 cut(s) 100, 296, 393
EaeI YGGCCR 1 cut(s) 591
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Ecl136II GAGCTC 1 cut(s) 151
Eco24I GRGCYC 2 cut(s) 153, 589
Eco47I GGWCC 1 cut(s) 606
Eco53kI GAGCTC 1 cut(s) 151
Eco88I CYCGRG 2 cut(s) 359, 686
EcoICRI GAGCTC 1 cut(s) 151
EcoT38I GRGCYC 2 cut(s) 153, 589
Esp3I CGTCTC 1 cut(s) 288
FaeI CATG 4 cut(s) 196, 202, 324, 801
FaiI YATR 8 cut(s) 68, 182, 194, 200, 322, 479, 773, 799
FaqI GGGAC 3 cut(s) 319, 356, 592
FatI CATG 4 cut(s) 192, 198, 320, 797
FokI GGATG 2 cut(s) 313, 791
FriOI GRGCYC 2 cut(s) 153, 589
GlaI GCGC 1 cut(s) 465
HaeIII GGCC 3 cut(s) 422, 593, 685
HapII CCGG 5 cut(s) 418, 549, 594, 644, 687
HgaI GACGC 1 cut(s) 497
HhaI GCGC 1 cut(s) 466
Hin1I GRCGYC 1 cut(s) 489
Hin1II CATG 4 cut(s) 196, 202, 324, 801
Hin6I GCGC 1 cut(s) 464
HinP1I GCGC 1 cut(s) 464
HincII GTYRAC 1 cut(s) 345
HindII GTYRAC 1 cut(s) 345
HinfI GANTC 3 cut(s) 171, 406, 700
HpaII CCGG 5 cut(s) 418, 549, 594, 644, 687
HphI GGTGA 2 cut(s) 148, 291
Hpy166II GTNNAC 2 cut(s) 345, 673
Hpy188I TCNGA 3 cut(s) 38, 405, 472
Hpy188III TCNNGA 5 cut(s) 430, 438, 616, 658, 704
Hpy8I GTNNAC 2 cut(s) 345, 673
Hpy99I CGWCG 2 cut(s) 80, 472
HpyAV CCTTC 5 cut(s) 228, 324, 396, 433, 655
HpyCH4III ACNGT 3 cut(s) 303, 370, 632
HpyCH4IV ACGT 2 cut(s) 164, 332
HpyCH4V TGCA 4 cut(s) 208, 477, 722, 757
HpyF10VI GCNNNNNNNGC 8 cut(s) 182, 259, 262, 265, 268, 488, 538, 715
HpyF3I CTNAG 2 cut(s) 621, 710
HpySE526I ACGT 2 cut(s) 164, 332
Hsp92I GRCGYC 1 cut(s) 489
Hsp92II CATG 4 cut(s) 196, 202, 324, 801
HspAI GCGC 1 cut(s) 464
Kzo9I GATC 3 cut(s) 100, 296, 393
LmnI GCTCC 4 cut(s) 9, 132, 406, 706
Lsp1109I GCAGC 2 cut(s) 410, 506
LweI GCATC 1 cut(s) 421
MaeII ACGT 2 cut(s) 164, 332
MaeIII GTNAC 2 cut(s) 154, 485
MalI GATC 3 cut(s) 102, 298, 395
MboI GATC 3 cut(s) 100, 296, 393
MboII GAAGA 5 cut(s) 25, 53, 342, 758, 778
MhlI GDGCHC 2 cut(s) 153, 589
MluCI AATT 1 cut(s) 514
MlyI GAGTC 1 cut(s) 165
MmeI TCCRAC 1 cut(s) 450
MslI CAYNNNNRTG 1 cut(s) 197
MspI CCGG 5 cut(s) 418, 549, 594, 644, 687
MspR9I CCNGG 3 cut(s) 419, 687, 688
Mva1269I GAATGC 1 cut(s) 742
MvnI CGCG 3 cut(s) 464, 494, 541
MwoI GCNNNNNNNGC 8 cut(s) 182, 259, 262, 265, 268, 488, 538, 715
NciI CCSGG 3 cut(s) 419, 687, 688
NdeII GATC 3 cut(s) 100, 296, 393
NlaIII CATG 4 cut(s) 196, 202, 324, 801
NlaIV GGNNCC 2 cut(s) 43, 608
NmeAIII GCCGAG 1 cut(s) 503
NmuCI GTSAC 2 cut(s) 154, 485
PcsI WCGNNNNNNNCGW 1 cut(s) 338
PctI GAATGC 1 cut(s) 742
PfeI GAWTC 2 cut(s) 406, 700
PflFI GACNNNGTC 1 cut(s) 368
PinAI ACCGGT 1 cut(s) 643
PleI GAGTC 1 cut(s) 165
PpsI GAGTC 1 cut(s) 165
Ppu21I YACGTR 1 cut(s) 165
Psp124BI GAGCTC 1 cut(s) 153
PspN4I GGNNCC 2 cut(s) 43, 608
PspPI GGNCC 3 cut(s) 420, 606, 684
PsyI GACNNNGTC 1 cut(s) 368
RsaI GTAC 4 cut(s) 21, 167, 499, 761
RsaNI GTAC 4 cut(s) 20, 166, 498, 760
RseI CAYNNNNRTG 1 cut(s) 197
SacI GAGCTC 1 cut(s) 153
Sau3AI GATC 3 cut(s) 100, 296, 393
Sau96I GGNCC 3 cut(s) 420, 606, 684
SchI GAGTC 1 cut(s) 165
ScrFI CCNGG 3 cut(s) 419, 687, 688
SduI GDGCHC 2 cut(s) 153, 589
SfaNI GCATC 1 cut(s) 421
SinI GGWCC 1 cut(s) 606
SmaI CCCGGG 1 cut(s) 688
SmiMI CAYNNNNRTG 1 cut(s) 197
SmlI CTYRAG 1 cut(s) 745
SmoI CTYRAG 1 cut(s) 745
Sse9I AATT 1 cut(s) 514
SstI GAGCTC 1 cut(s) 153
StyD4I CCNGG 3 cut(s) 417, 685, 686
TaaI ACNGT 3 cut(s) 303, 370, 632
TaiI ACGT 2 cut(s) 167, 335
TaqI TCGA 1 cut(s) 581
TasI AATT 1 cut(s) 514
TatI WGTACW 1 cut(s) 759
TauI GCSGC 8 cut(s) 256, 259, 262, 265, 268, 271, 494, 544
TfiI GAWTC 2 cut(s) 406, 700
TscAI CASTG 2 cut(s) 396, 490
TseFI GTSAC 2 cut(s) 154, 485
TseI GCWGC 2 cut(s) 398, 519
Tsp45I GTSAC 2 cut(s) 154, 485
TspGWI ACGGA 2 cut(s) 276, 791
TspMI CCCGGG 1 cut(s) 686
TspRI CASTG 2 cut(s) 396, 490
Tth111I GACNNNGTC 1 cut(s) 368
VpaK11BI GGWCC 1 cut(s) 606
XmaI CCCGGG 1 cut(s) 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.