MD15G1137300.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0015319
Physical Location & Seq
Forward (+)
10081287 .. 10083565
2279 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1137300.v1.1.491

Sequence Viewer

Length: 876 bp
ATGCTGCCACTAAAGCTGGTGCGCTCTCTTGTGTTTGGAGAAACCATCAACAACAACCCTCTCCTTCTTCCCCAACATCACGACGACGACGACGACGACAATGGCAGTCACAAACAAACGGGCGGCGGAGGAAGAAGCAGAAGCAGCAGCAAATCGAGAACCCCATTTCTCCTATTCCTCCCAACCAAAGAGATTGTCACTGACACTTACAGACTTGCCACCATAGCCAGAGACATGGGCATGGACTTGCATCCAACCCCATCTCTCTCCCACATCATTCTCTCCTTCCCGCCTCCGCCGCTGTCCTCCTCCTCATCTCCCTCTACAGCATCGCCGTCCTCATTTCCATCGTCGTGGTCCTCATCGTCGCTGTCGTCAACGTCTTTACCCGACGACGCGGTTCCCCTCCCCTTCCCCTGTCTCTCCGCCGCCCCAATTTCCCATCTTCGCGCATTTGTCAAGCTCTCCAAAGGCCTTTTCAAGCTGGTTTTTGTGCGCTCCGATTGCAAACCCAGTGAGGCAAATAACGTTGGCAGTCAAAGCAATTGGAATTGCAGCTCAATGTCGCTGTTTTCGCGGCTCACCGGTGACAGAATTGATACAATGGAAGGGTTTTCCCGGGCTTTGGCGGGACTGGGATGGACCCTTTTCAAGACCAAGGAAAACCCAGCAACGGATTCGAGGGACAGGAGAGTTTTCGGTGGCAGACCGGTGTATCTATTTAGAAAGGTGGATACAAACAGGGTTAGAGCTTGCGCGGTTGGGGAGTGTAGGATTCGGGAGTTGAGGCTGCCCCCACTGGATTTTAGGAATGCCCCTTTGAGGATTTTGCACTACATTCTTCTTATGACTGATGATATCTTCTATCTTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

292

Amino Acids

32.11

Weight (kDa)

9.32

Isoelectric Point (pI)

60.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015319)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08770
fragaria_vesca FvH4_1g25250 FvH4_1g25250
malus_domestica MD15G1137000.v1.1 MD15G1137300.v1.1
prunus_persica Prupe.4G279900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0123171
rosa_multiflora Rmu_co8220114.1_g000001
rosa_roxburghii Rroxscaffold_2G00120860
rosa_rugosa Rorug02G0243600
rosa_samantha Rh2AG303100 Rh2BG311000 Rh2CG289400 Rh2DG327100
rosa_wichuraiana Rw2G024140 Rw2G024230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 398, 450, 577, 758
AclI AACGTT 1 cut(s) 528
AfiI CCNNNNNNNGG 3 cut(s) 625, 673, 822
AgeI ACCGGT 2 cut(s) 584, 709
AgsI TTSAA 2 cut(s) 481, 652
AjuI GAANNNNNNNTTGG 2 cut(s) 461, 493
AluBI AGCT 5 cut(s) 16, 463, 484, 558, 752
AluI AGCT 5 cut(s) 16, 463, 484, 558, 752
Alw26I GTCTC 2 cut(s) 225, 425
Ama87I CYCGRG 1 cut(s) 618
AoxI GGCC 1 cut(s) 472
ApeKI GCWGC 5 cut(s) 4, 144, 147, 555, 790
ArsI GACNNNNNNTTYG 2 cut(s) 180, 212
AsiGI ACCGGT 2 cut(s) 584, 709
AspLEI GCGC 4 cut(s) 24, 452, 498, 758
AspS9I GGNCC 2 cut(s) 357, 642
AsuC2I CCSGG 2 cut(s) 619, 620
AsuHPI GGTGA 2 cut(s) 574, 599
AvaI CYCGRG 1 cut(s) 618
AvaII GGWCC 2 cut(s) 357, 642
BaeI ACNNNNGTAYC 2 cut(s) 698, 731
BbvI GCAGC 4 cut(s) 156, 159, 567, 777
BccI CCATC 5 cut(s) 53, 268, 355, 450, 633
BceAI ACGGC 1 cut(s) 319
BcgI CGANNNNNNTGC 2 cut(s) 660, 694
BciVI GTATCC 1 cut(s) 727
BcnI CCSGG 2 cut(s) 619, 620
BcoDI GTCTC 2 cut(s) 225, 425
BfmI CTRYAG 1 cut(s) 324
BfuI GTATCC 1 cut(s) 727
BisI GCNGC 9 cut(s) 5, 124, 145, 148, 299, 429, 556, 578, 791
BlsI GCNGC 9 cut(s) 6, 125, 146, 149, 300, 430, 557, 579, 792
Bme1390I CCNGG 2 cut(s) 619, 620
Bme18I GGWCC 2 cut(s) 357, 642
BmeT110I CYCGRG 1 cut(s) 618
BmgT120I GGNCC 2 cut(s) 357, 642
BmiI GGNNCC 2 cut(s) 402, 644
BmrFI CCNGG 2 cut(s) 619, 620
BmrI ACTGGG 2 cut(s) 507, 644
BmsI GCATC 2 cut(s) 259, 338
BmuI ACTGGG 2 cut(s) 507, 644
BpuMI CCSGG 2 cut(s) 619, 620
BsaJI CCNNGG 2 cut(s) 618, 657
BsaWI WCCGGW 2 cut(s) 584, 709
Bsc4I CCNNNNNNNGG 3 cut(s) 625, 673, 822
Bse118I RCCGGY 2 cut(s) 584, 709
Bse1I ACTGG 3 cut(s) 513, 639, 804
BseDI CCNNGG 2 cut(s) 618, 657
BseGI GGATG 2 cut(s) 250, 644
BseLI CCNNNNNNNGG 3 cut(s) 625, 673, 822
BseNI ACTGG 3 cut(s) 513, 639, 804
BseRI GAGGAG 2 cut(s) 298, 301
BseXI GCAGC 4 cut(s) 156, 159, 567, 777
BseYI CCCAGC 1 cut(s) 667
Bsh1236I CGCG 4 cut(s) 398, 450, 577, 758
BshFI GGCC 1 cut(s) 474
BshTI ACCGGT 2 cut(s) 584, 709
BsiHKCI CYCGRG 1 cut(s) 618
BsiSI CCGG 3 cut(s) 585, 619, 710
BslFI GGGAC 2 cut(s) 645, 698
BslI CCNNNNNNNGG 3 cut(s) 625, 673, 822
BsmAI GTCTC 2 cut(s) 225, 425
BsmFI GGGAC 2 cut(s) 645, 698
BsmI GAATGC 1 cut(s) 817
BsnI GGCC 1 cut(s) 474
BsoBI CYCGRG 1 cut(s) 618
BspANI GGCC 1 cut(s) 474
BspFNI CGCG 4 cut(s) 398, 450, 577, 758
BspLI GGNNCC 2 cut(s) 402, 644
BsrFI RCCGGY 2 cut(s) 584, 709
BsrI ACTGG 3 cut(s) 513, 639, 804
BssAI RCCGGY 2 cut(s) 584, 709
BssECI CCNNGG 2 cut(s) 618, 657
BssT1I CCWWGG 1 cut(s) 657
BstC8I GCNNGC 1 cut(s) 754
BstF5I GGATG 2 cut(s) 250, 644
BstFNI CGCG 4 cut(s) 398, 450, 577, 758
BstHHI GCGC 4 cut(s) 24, 452, 498, 758
BstMAI GTCTC 2 cut(s) 225, 425
BstMWI GCNNNNNNNGC 7 cut(s) 13, 144, 224, 298, 504, 540, 574
BstSCI CCNGG 2 cut(s) 617, 618
BstSFI CTRYAG 1 cut(s) 324
BstUI CGCG 4 cut(s) 398, 450, 577, 758
BstV1I GCAGC 4 cut(s) 156, 159, 567, 777
BstXI CCANNNNNNTGG 2 cut(s) 235, 354
BsuI GTATCC 1 cut(s) 727
BsuRI GGCC 1 cut(s) 474
BtgZI GCGATG 1 cut(s) 315
BtsCI GGATG 2 cut(s) 250, 644
BtsIMutI CAGTG 3 cut(s) 198, 520, 797
Cac8I GCNNGC 1 cut(s) 754
CfoI GCGC 4 cut(s) 24, 452, 498, 758
Cfr10I RCCGGY 2 cut(s) 584, 709
Cfr13I GGNCC 2 cut(s) 357, 642
Cfr9I CCCGGG 1 cut(s) 618
CseI GACGC 1 cut(s) 404
CspAI ACCGGT 2 cut(s) 584, 709
CviAII CATG 2 cut(s) 235, 241
EciI GGCGGA 3 cut(s) 141, 285, 415
Eco130I CCWWGG 1 cut(s) 657
Eco147I AGGCCT 1 cut(s) 474
Eco32I GATATC 1 cut(s) 859
Eco47I GGWCC 2 cut(s) 357, 642
Eco88I CYCGRG 1 cut(s) 618
EcoRV GATATC 1 cut(s) 859
EcoT14I CCWWGG 1 cut(s) 657
ErhI CCWWGG 1 cut(s) 657
FaeI CATG 2 cut(s) 238, 244
FaiI YATR 5 cut(s) 224, 236, 242, 848, 874
FaqI GGGAC 2 cut(s) 645, 698
FatI CATG 2 cut(s) 234, 240
FauI CCCGC 2 cut(s) 297, 622
Fnu4HI GCNGC 9 cut(s) 5, 124, 145, 148, 299, 429, 556, 578, 791
FokI GGATG 2 cut(s) 237, 651
Fsp4HI GCNGC 9 cut(s) 5, 124, 145, 148, 299, 429, 556, 578, 791
GlaI GCGC 4 cut(s) 23, 451, 497, 757
GluI GCNGC 9 cut(s) 5, 124, 145, 148, 299, 429, 556, 578, 791
GsaI CCCAGC 1 cut(s) 671
HaeIII GGCC 1 cut(s) 474
HapII CCGG 3 cut(s) 585, 619, 710
HgaI GACGC 1 cut(s) 404
HhaI GCGC 4 cut(s) 24, 452, 498, 758
Hin1II CATG 2 cut(s) 238, 244
Hin6I GCGC 4 cut(s) 22, 450, 496, 756
HinP1I GCGC 4 cut(s) 22, 450, 496, 756
HincII GTYRAC 1 cut(s) 378
HindII GTYRAC 1 cut(s) 378
HinfI GANTC 2 cut(s) 677, 775
HpaII CCGG 3 cut(s) 585, 619, 710
HphI GGTGA 2 cut(s) 574, 599
Hpy166II GTNNAC 1 cut(s) 378
Hpy188I TCNGA 1 cut(s) 502
Hpy188III TCNNGA 4 cut(s) 80, 156, 652, 779
Hpy8I GTNNAC 1 cut(s) 378
Hpy99I CGWCG 9 cut(s) 86, 89, 92, 95, 98, 355, 370, 395, 398
HpyAV CCTTC 4 cut(s) 74, 295, 421, 602
HpyCH4IV ACGT 2 cut(s) 380, 528
HpyCH4V TGCA 5 cut(s) 250, 507, 555, 832, 872
HpyF10VI GCNNNNNNNGC 7 cut(s) 13, 144, 224, 298, 504, 540, 574
HpySE526I ACGT 2 cut(s) 380, 528
Hsp92II CATG 2 cut(s) 238, 244
HspAI GCGC 4 cut(s) 22, 450, 496, 756
LmnI GCTCC 1 cut(s) 503
Lsp1109I GCAGC 4 cut(s) 156, 159, 567, 777
LweI GCATC 2 cut(s) 259, 338
MaeII ACGT 2 cut(s) 380, 528
MaeIII GTNAC 3 cut(s) 107, 196, 587
MboII GAAGA 5 cut(s) 59, 144, 437, 833, 853
MfeI CAATTG 1 cut(s) 544
MluCI AATT 4 cut(s) 435, 544, 550, 594
MmeI TCCRAC 1 cut(s) 278
MslI CAYNNNNRTG 2 cut(s) 239, 352
MspA1I CMGCKG 1 cut(s) 301
MspI CCGG 3 cut(s) 585, 619, 710
MspR9I CCNGG 2 cut(s) 619, 620
MunI CAATTG 1 cut(s) 544
Mva1269I GAATGC 1 cut(s) 817
MvnI CGCG 4 cut(s) 398, 450, 577, 758
MwoI GCNNNNNNNGC 7 cut(s) 13, 144, 224, 298, 504, 540, 574
NciI CCSGG 2 cut(s) 619, 620
NlaIII CATG 2 cut(s) 238, 244
NlaIV GGNNCC 2 cut(s) 402, 644
NmuCI GTSAC 3 cut(s) 107, 196, 587
PceI AGGCCT 1 cut(s) 474
PcsI WCGNNNNNNNCGW 4 cut(s) 87, 90, 93, 371
PctI GAATGC 1 cut(s) 817
PfeI GAWTC 2 cut(s) 677, 775
PinAI ACCGGT 2 cut(s) 584, 709
PkrI GCNGC 9 cut(s) 6, 125, 146, 149, 300, 430, 557, 579, 792
Psp1406I AACGTT 1 cut(s) 528
PspFI CCCAGC 1 cut(s) 667
PspN4I GGNNCC 2 cut(s) 402, 644
PspPI GGNCC 2 cut(s) 357, 642
RseI CAYNNNNRTG 2 cut(s) 239, 352
SatI GCNGC 9 cut(s) 5, 124, 145, 148, 299, 429, 556, 578, 791
Sau96I GGNCC 2 cut(s) 357, 642
ScrFI CCNGG 2 cut(s) 619, 620
SetI ASST 8 cut(s) 18, 383, 465, 486, 531, 560, 732, 754
SfaNI GCATC 2 cut(s) 259, 338
SfcI CTRYAG 1 cut(s) 324
SgrAI CRCCGGYG 1 cut(s) 584
SinI GGWCC 2 cut(s) 357, 642
SmaI CCCGGG 1 cut(s) 620
SmiMI CAYNNNNRTG 2 cut(s) 239, 352
Sse9I AATT 4 cut(s) 435, 544, 550, 594
SseBI AGGCCT 1 cut(s) 474
StuI AGGCCT 1 cut(s) 474
StyD4I CCNGG 2 cut(s) 617, 618
StyI CCWWGG 1 cut(s) 657
TaiI ACGT 2 cut(s) 383, 531
TaqI TCGA 2 cut(s) 155, 680
TasI AATT 4 cut(s) 435, 544, 550, 594
TauI GCSGC 4 cut(s) 126, 301, 431, 580
TfiI GAWTC 2 cut(s) 677, 775
TscAI CASTG 3 cut(s) 205, 520, 804
TseFI GTSAC 3 cut(s) 107, 196, 587
TseI GCWGC 5 cut(s) 4, 144, 147, 555, 790
Tsp45I GTSAC 3 cut(s) 107, 196, 587
TspGWI ACGGA 1 cut(s) 689
TspMI CCCGGG 1 cut(s) 618
TspRI CASTG 3 cut(s) 205, 520, 804
VpaK11BI GGWCC 2 cut(s) 357, 642
XmaI CCCGGG 1 cut(s) 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.