Rmu_co8220114.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8220114.1
OG0015319
Physical Location & Seq
Reverse (-)
317 .. 685
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8220114.1_g000001.1.cds

Sequence Viewer

Length: 369 bp
atgtccagaggtctgttcaagctggtgttcgcgccgtcggagtgcatagccagcgacgccgcgagtaccgagagccattggaattgctgctcggcttcgctgttctcgcggctcgccggagatagaatggacacaatggaggggttttcgagggctctggccggagttgggtggtcccttttcaagactaaggagaacggtggtgggaaatcggtgtatttgttcaggaaggttgatgtgaatagggttcgggccggggagtgtaggattcgggagctgaggttgcctgcattggattttaggaatgcccctttgaggattttgcagtacattcttcttatgacggatgacatcttctatctggcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.69

Weight (kDa)

9.07

Isoelectric Point (pI)

41.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015319)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08770
fragaria_vesca FvH4_1g25250 FvH4_1g25250
malus_domestica MD15G1137000.v1.1 MD15G1137300.v1.1
prunus_persica Prupe.4G279900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0123171
rosa_multiflora Rmu_co8220114.1_g000001
rosa_roxburghii Rroxscaffold_2G00120860
rosa_rugosa Rorug02G0243600
rosa_samantha Rh2AG303100 Rh2BG311000 Rh2CG289400 Rh2DG327100
rosa_wichuraiana Rw2G024140 Rw2G024230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 32, 62, 109
AciI CCGC 2 cut(s) 60, 109
AcoI YGGCCR 1 cut(s) 159
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 2 cut(s) 67, 329
AfiI CCNNNNNNNGG 2 cut(s) 168, 315
AgsI TTSAA 2 cut(s) 19, 184
AluBI AGCT 2 cut(s) 22, 277
AluI AGCT 2 cut(s) 22, 277
AoxI GGCC 2 cut(s) 159, 252
ApeKI GCWGC 1 cut(s) 87
AspLEI GCGC 1 cut(s) 34
AspS9I GGNCC 2 cut(s) 174, 252
AsuC2I CCSGG 1 cut(s) 256
AvaII GGWCC 1 cut(s) 174
BanII GRGCYC 1 cut(s) 157
BbvCI CCTCAGC 1 cut(s) 278
BbvI GCAGC 1 cut(s) 74
BceAI ACGGC 1 cut(s) 19
BcnI CCSGG 1 cut(s) 256
BisI GCNGC 3 cut(s) 60, 88, 110
BlsI GCNGC 3 cut(s) 61, 89, 111
Bme1390I CCNGG 1 cut(s) 256
Bme18I GGWCC 1 cut(s) 174
BmgT120I GGNCC 2 cut(s) 174, 252
BmiI GGNNCC 1 cut(s) 176
BmrFI CCNGG 1 cut(s) 256
Bpu10I CCTNAGC 1 cut(s) 278
BpuMI CCSGG 1 cut(s) 256
BsaHI GRCGYC 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 255
BsaXI ACNNNNNCTCC 2 cut(s) 266, 296
Bsc4I CCNNNNNNNGG 2 cut(s) 168, 315
BseDI CCNNGG 1 cut(s) 255
BseGI GGATG 1 cut(s) 352
BseLI CCNNNNNNNGG 2 cut(s) 168, 315
BseMII CTCAG 1 cut(s) 269
BseXI GCAGC 1 cut(s) 74
Bsh1236I CGCG 3 cut(s) 32, 62, 109
BshFI GGCC 2 cut(s) 161, 254
BsiSI CCGG 3 cut(s) 117, 162, 255
BslFI GGGAC 1 cut(s) 160
BslI CCNNNNNNNGG 2 cut(s) 168, 315
BsmFI GGGAC 1 cut(s) 160
BsmI GAATGC 1 cut(s) 310
BsnI GGCC 2 cut(s) 161, 254
Bsp1286I GDGCHC 1 cut(s) 157
BspACI CCGC 2 cut(s) 60, 109
BspANI GGCC 2 cut(s) 161, 254
BspCNI CTCAG 1 cut(s) 270
BspFNI CGCG 3 cut(s) 32, 62, 109
BspLI GGNNCC 1 cut(s) 176
BssECI CCNNGG 1 cut(s) 255
BssNI GRCGYC 1 cut(s) 57
Bst4CI ACNGT 1 cut(s) 200
BstACI GRCGYC 1 cut(s) 57
BstC8I GCNNGC 3 cut(s) 52, 114, 288
BstDEI CTNAG 2 cut(s) 189, 278
BstF5I GGATG 1 cut(s) 352
BstFNI CGCG 3 cut(s) 32, 62, 109
BstHHI GCGC 1 cut(s) 34
BstMWI GCNNNNNNNGC 4 cut(s) 51, 56, 106, 283
BstSCI CCNGG 1 cut(s) 254
BstUI CGCG 3 cut(s) 32, 62, 109
BstV1I GCAGC 1 cut(s) 74
BsuRI GGCC 2 cut(s) 161, 254
BtsCI GGATG 1 cut(s) 352
Cac8I GCNNGC 3 cut(s) 52, 114, 288
CfoI GCGC 1 cut(s) 34
Cfr13I GGNCC 2 cut(s) 174, 252
CseI GACGC 1 cut(s) 65
Csp6I GTAC 2 cut(s) 66, 328
CviAII CATG 1 cut(s) 366
CviJI RGCY 9 cut(s) 22, 50, 75, 95, 112, 155, 161, 254, 277
CviKI_1 RGCY 9 cut(s) 22, 50, 75, 95, 112, 155, 161, 254, 277
CviQI GTAC 2 cut(s) 66, 328
DdeI CTNAG 2 cut(s) 189, 278
EaeI YGGCCR 1 cut(s) 159
Eco24I GRGCYC 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 174
EcoT38I GRGCYC 1 cut(s) 157
FaeI CATG 1 cut(s) 369
FaiI YATR 3 cut(s) 47, 341, 367
FaqI GGGAC 1 cut(s) 160
FatI CATG 1 cut(s) 365
Fnu4HI GCNGC 3 cut(s) 60, 88, 110
FokI GGATG 1 cut(s) 359
FriOI GRGCYC 1 cut(s) 157
Fsp4HI GCNGC 3 cut(s) 60, 88, 110
GlaI GCGC 1 cut(s) 33
GluI GCNGC 3 cut(s) 60, 88, 110
HaeIII GGCC 2 cut(s) 161, 254
HapII CCGG 3 cut(s) 117, 162, 255
HgaI GACGC 1 cut(s) 65
HhaI GCGC 1 cut(s) 34
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 1 cut(s) 369
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HinfI GANTC 1 cut(s) 268
HpaII CCGG 3 cut(s) 117, 162, 255
Hpy188I TCNGA 1 cut(s) 40
Hpy188III TCNNGA 4 cut(s) 6, 184, 226, 272
Hpy99I CGWCG 2 cut(s) 40, 59
HpyAV CCTTC 1 cut(s) 223
HpyCH4III ACNGT 1 cut(s) 200
HpyCH4V TGCA 3 cut(s) 45, 290, 325
HpyF10VI GCNNNNNNNGC 4 cut(s) 51, 56, 106, 283
HpyF3I CTNAG 2 cut(s) 189, 278
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 1 cut(s) 369
HspAI GCGC 1 cut(s) 32
LmnI GCTCC 1 cut(s) 274
Lsp1109I GCAGC 1 cut(s) 74
MboII GAAGA 2 cut(s) 326, 346
MhlI GDGCHC 1 cut(s) 157
MluCI AATT 1 cut(s) 82
MmeI TCCRAC 1 cut(s) 18
MnlI CCTC 4 cut(s) 133, 144, 273, 309
MspI CCGG 3 cut(s) 117, 162, 255
MspR9I CCNGG 1 cut(s) 256
Mva1269I GAATGC 1 cut(s) 310
MvnI CGCG 3 cut(s) 32, 62, 109
MwoI GCNNNNNNNGC 4 cut(s) 51, 56, 106, 283
NciI CCSGG 1 cut(s) 256
NlaIII CATG 1 cut(s) 369
NlaIV GGNNCC 1 cut(s) 176
NmeAIII GCCGAG 1 cut(s) 71
PctI GAATGC 1 cut(s) 310
PfeI GAWTC 1 cut(s) 268
PkrI GCNGC 3 cut(s) 61, 89, 111
PspN4I GGNNCC 1 cut(s) 176
PspPI GGNCC 2 cut(s) 174, 252
RsaI GTAC 2 cut(s) 67, 329
RsaNI GTAC 2 cut(s) 66, 328
SatI GCNGC 3 cut(s) 60, 88, 110
Sau96I GGNCC 2 cut(s) 174, 252
ScrFI CCNGG 1 cut(s) 256
SduI GDGCHC 1 cut(s) 157
SetI ASST 5 cut(s) 13, 24, 234, 279, 284
SinI GGWCC 1 cut(s) 174
Sse9I AATT 1 cut(s) 82
SsiI CCGC 2 cut(s) 60, 109
StyD4I CCNGG 1 cut(s) 254
TaaI ACNGT 1 cut(s) 200
TaqI TCGA 1 cut(s) 149
TasI AATT 1 cut(s) 82
TatI WGTACW 1 cut(s) 327
TauI GCSGC 2 cut(s) 62, 112
TfiI GAWTC 1 cut(s) 268
TseI GCWGC 1 cut(s) 87
TspGWI ACGGA 1 cut(s) 359
VpaK11BI GGWCC 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.