Rw2G024230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0015319
Physical Location & Seq
Forward (+)
35768982 .. 35769767
786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G024230.1

Sequence Viewer

Length: 786 bp
ATGCTCCCACTAAAGCTGGTACGCTCTCTGGTCTTCGGAGGAACCATCAACAACAACCCTCTTCTTATGGACACCGACGAGGAGGAGGAGGAGGAGGATCGCAATGTCGTCAAAACCCCATTGCTCCTTTTCCTCCCAACCAAAGAGCTCGTCACCGACACGTACAGACTCGCCACCATAGCCAGAGACATGGGCATGGACTTGCACCCAACCCCTTCTCTCTCCCACATCATTCTCTCACACCCGCCGCCGCCGCCATCGTCGTCGTCTCCGTCTCTAGGATCACCGTCCTCGTTTCCTTCAACATGGTCATCCACGTCCCTGTCGTCAACTTCTTCTCTGCCCGAGGACACAGTCCCCCTCCCTTTTCCTTCACTGATCGCAGCTCCGATTCCGCATCTCCGGGCCTTCGTCAAGATGTCCAGAGGTCTGTTCAAGCTGGTGTTCGCGCCGTCGGAGTGCATAGCCAGCGACGCCGCGAGTACCGAGAGCCATTGGAATTGCTGCTCGGCCTCGCTGTTCTCGCGGCTCGCCGGAGATAGAATGGACACAATGGAGGGGTTTTCGAGGGCTCTGGCCGGAGTTGGGTGGTCCCTTTTCAAGACTAAGGAGAACGGTGGTGGGAAATCGGTGTATTTGTTCAGGAAGGTTGATGTGAACAGGGTTCGGGCCGGGGAGTGTAGGATTCGGGAGCTGAGGTTGCCTGCATTGGATTTTAGGAATGCCCCTTTGAGGATTTTGCAGTACATTCTTCTTATGACGGATGACATCTTCTATCTGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

261

Amino Acids

28.75

Weight (kDa)

6.22

Isoelectric Point (pI)

57.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015319)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08770
fragaria_vesca FvH4_1g25250 FvH4_1g25250
malus_domestica MD15G1137000.v1.1 MD15G1137300.v1.1
prunus_persica Prupe.4G279900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0123171
rosa_multiflora Rmu_co8220114.1_g000001
rosa_roxburghii Rroxscaffold_2G00120860
rosa_rugosa Rorug02G0243600
rosa_samantha Rh2AG303100 Rh2BG311000 Rh2CG289400 Rh2DG327100
rosa_wichuraiana Rw2G024140 Rw2G024230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 449, 479, 526
AciI CCGC 7 cut(s) 245, 248, 251, 254, 395, 477, 526
AclWI GGATC 2 cut(s) 105, 289
AcoI YGGCCR 1 cut(s) 576
AcyI GRCGYC 1 cut(s) 474
AfaI GTAC 4 cut(s) 21, 164, 484, 746
AfiI CCNNNNNNNGG 3 cut(s) 278, 585, 732
AflIII ACRYGT 1 cut(s) 159
AgsI TTSAA 3 cut(s) 303, 436, 601
AjiI CACGTC 1 cut(s) 318
AluBI AGCT 5 cut(s) 16, 148, 386, 439, 694
AluI AGCT 5 cut(s) 16, 148, 386, 439, 694
Alw21I GWGCWC 1 cut(s) 150
Alw26I GTCTC 3 cut(s) 180, 273, 279
AlwI GGATC 2 cut(s) 105, 289
Ama87I CYCGRG 1 cut(s) 344
AoxI GGCC 4 cut(s) 405, 510, 576, 669
ApeKI GCWGC 2 cut(s) 383, 504
ArsI GACNNNNNNTTYG 2 cut(s) 135, 167
AspLEI GCGC 1 cut(s) 451
AspS9I GGNCC 3 cut(s) 405, 591, 669
AsuC2I CCSGG 2 cut(s) 404, 673
AsuHPI GGTGA 2 cut(s) 145, 276
AvaI CYCGRG 1 cut(s) 344
AvaII GGWCC 1 cut(s) 591
BanII GRGCYC 2 cut(s) 150, 574
BbsI GAAGAC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 150
BbvCI CCTCAGC 1 cut(s) 695
BbvI GCAGC 2 cut(s) 395, 491
BccI CCATC 2 cut(s) 53, 265
BceAI ACGGC 1 cut(s) 436
BcnI CCSGG 2 cut(s) 404, 673
BcoDI GTCTC 3 cut(s) 180, 273, 279
BfaI CTAG 1 cut(s) 278
BisI GCNGC 7 cut(s) 248, 251, 254, 384, 477, 505, 527
BlsI GCNGC 7 cut(s) 249, 252, 255, 385, 478, 506, 528
Bme1390I CCNGG 2 cut(s) 404, 673
Bme18I GGWCC 1 cut(s) 591
BmeT110I CYCGRG 1 cut(s) 344
BmgBI CACGTC 1 cut(s) 318
BmgT120I GGNCC 3 cut(s) 405, 591, 669
BmiI GGNNCC 2 cut(s) 43, 593
BmrFI CCNGG 2 cut(s) 404, 673
BmsI GCATC 1 cut(s) 406
BpiI GAAGAC 1 cut(s) 25
Bpu10I CCTNAGC 1 cut(s) 695
BpuMI CCSGG 2 cut(s) 404, 673
BsaAI YACGTR 1 cut(s) 162
BsaHI GRCGYC 1 cut(s) 474
BsaJI CCNNGG 2 cut(s) 345, 672
BsaXI ACNNNNNCTCC 2 cut(s) 683, 713
Bsc4I CCNNNNNNNGG 3 cut(s) 278, 585, 732
Bse3DI GCAATG 2 cut(s) 109, 119
BseDI CCNNGG 2 cut(s) 345, 672
BseGI GGATG 2 cut(s) 311, 769
BseLI CCNNNNNNNGG 3 cut(s) 278, 585, 732
BseMI GCAATG 2 cut(s) 109, 119
BseMII CTCAG 1 cut(s) 686
BseRI GAGGAG 5 cut(s) 95, 98, 101, 104, 107
BseXI GCAGC 2 cut(s) 395, 491
Bsh1236I CGCG 3 cut(s) 449, 479, 526
BshFI GGCC 4 cut(s) 407, 512, 578, 671
BsiHKAI GWGCWC 1 cut(s) 150
BsiHKCI CYCGRG 1 cut(s) 344
BsiSI CCGG 4 cut(s) 403, 534, 579, 672
BslFI GGGAC 3 cut(s) 304, 341, 577
BslI CCNNNNNNNGG 3 cut(s) 278, 585, 732
BsmAI GTCTC 3 cut(s) 180, 273, 279
BsmBI CGTCTC 2 cut(s) 273, 279
BsmFI GGGAC 3 cut(s) 304, 341, 577
BsmI GAATGC 1 cut(s) 727
BsnI GGCC 4 cut(s) 407, 512, 578, 671
BsoBI CYCGRG 1 cut(s) 344
Bsp1286I GDGCHC 2 cut(s) 150, 574
Bsp143I GATC 3 cut(s) 97, 281, 378
BspACI CCGC 7 cut(s) 245, 248, 251, 254, 395, 477, 526
BspANI GGCC 4 cut(s) 407, 512, 578, 671
BspCNI CTCAG 1 cut(s) 687
BspFNI CGCG 3 cut(s) 449, 479, 526
BspLI GGNNCC 2 cut(s) 43, 593
BspPI GGATC 2 cut(s) 105, 289
BsrDI GCAATG 2 cut(s) 109, 119
BssECI CCNNGG 2 cut(s) 345, 672
BssMI GATC 3 cut(s) 97, 281, 378
BssNI GRCGYC 1 cut(s) 474
Bst4CI ACNGT 3 cut(s) 288, 355, 617
Bst6I CTCTTC 1 cut(s) 66
BstACI GRCGYC 1 cut(s) 474
BstBAI YACGTR 1 cut(s) 162
BstC8I GCNNGC 3 cut(s) 469, 531, 705
BstDEI CTNAG 2 cut(s) 606, 695
BstF5I GGATG 2 cut(s) 311, 769
BstFNI CGCG 3 cut(s) 449, 479, 526
BstHHI GCGC 1 cut(s) 451
BstKTI GATC 3 cut(s) 100, 284, 381
BstMAI GTCTC 3 cut(s) 180, 273, 279
BstMBI GATC 3 cut(s) 97, 281, 378
BstMWI GCNNNNNNNGC 6 cut(s) 179, 253, 468, 473, 523, 700
BstSCI CCNGG 2 cut(s) 402, 671
BstUI CGCG 3 cut(s) 449, 479, 526
BstV1I GCAGC 2 cut(s) 395, 491
BstV2I GAAGAC 1 cut(s) 25
BstXI CCANNNNNNTGG 1 cut(s) 190
BsuRI GGCC 4 cut(s) 407, 512, 578, 671
BtrI CACGTC 1 cut(s) 318
BtsCI GGATG 2 cut(s) 311, 769
BtsIMutI CAGTG 1 cut(s) 374
Cac8I GCNNGC 3 cut(s) 469, 531, 705
CfoI GCGC 1 cut(s) 451
Cfr13I GGNCC 3 cut(s) 405, 591, 669
CseI GACGC 1 cut(s) 482
Csp6I GTAC 4 cut(s) 20, 163, 483, 745
CviAII CATG 4 cut(s) 190, 196, 306, 783
CviQI GTAC 4 cut(s) 20, 163, 483, 745
DdeI CTNAG 2 cut(s) 606, 695
DpnI GATC 3 cut(s) 99, 283, 380
DpnII GATC 3 cut(s) 97, 281, 378
EaeI YGGCCR 1 cut(s) 576
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Ecl136II GAGCTC 1 cut(s) 148
Eco24I GRGCYC 2 cut(s) 150, 574
Eco47I GGWCC 1 cut(s) 591
Eco53kI GAGCTC 1 cut(s) 148
Eco88I CYCGRG 1 cut(s) 344
EcoICRI GAGCTC 1 cut(s) 148
EcoT38I GRGCYC 2 cut(s) 150, 574
Esp3I CGTCTC 2 cut(s) 273, 279
FaeI CATG 4 cut(s) 193, 199, 309, 786
FaiI YATR 8 cut(s) 68, 179, 191, 197, 307, 464, 758, 784
FaqI GGGAC 3 cut(s) 304, 341, 577
FatI CATG 4 cut(s) 189, 195, 305, 782
FauI CCCGC 1 cut(s) 252
Fnu4HI GCNGC 7 cut(s) 248, 251, 254, 384, 477, 505, 527
FokI GGATG 2 cut(s) 298, 776
FriOI GRGCYC 2 cut(s) 150, 574
Fsp4HI GCNGC 7 cut(s) 248, 251, 254, 384, 477, 505, 527
FspBI CTAG 1 cut(s) 278
GlaI GCGC 1 cut(s) 450
GluI GCNGC 7 cut(s) 248, 251, 254, 384, 477, 505, 527
HaeIII GGCC 4 cut(s) 407, 512, 578, 671
HapII CCGG 4 cut(s) 403, 534, 579, 672
HgaI GACGC 1 cut(s) 482
HhaI GCGC 1 cut(s) 451
Hin1I GRCGYC 1 cut(s) 474
Hin1II CATG 4 cut(s) 193, 199, 309, 786
Hin6I GCGC 1 cut(s) 449
HinP1I GCGC 1 cut(s) 449
HincII GTYRAC 1 cut(s) 330
HindII GTYRAC 1 cut(s) 330
HinfI GANTC 3 cut(s) 168, 391, 685
HpaII CCGG 4 cut(s) 403, 534, 579, 672
HphI GGTGA 2 cut(s) 145, 276
Hpy166II GTNNAC 2 cut(s) 330, 658
Hpy188I TCNGA 3 cut(s) 38, 390, 457
Hpy188III TCNNGA 5 cut(s) 415, 423, 601, 643, 689
Hpy8I GTNNAC 2 cut(s) 330, 658
Hpy99I CGWCG 5 cut(s) 80, 265, 268, 457, 476
HpyAV CCTTC 5 cut(s) 225, 309, 381, 418, 640
HpyCH4III ACNGT 3 cut(s) 288, 355, 617
HpyCH4IV ACGT 2 cut(s) 161, 317
HpyCH4V TGCA 4 cut(s) 205, 462, 707, 742
HpyF10VI GCNNNNNNNGC 6 cut(s) 179, 253, 468, 473, 523, 700
HpyF3I CTNAG 2 cut(s) 606, 695
HpySE526I ACGT 2 cut(s) 161, 317
Hsp92I GRCGYC 1 cut(s) 474
Hsp92II CATG 4 cut(s) 193, 199, 309, 786
HspAI GCGC 1 cut(s) 449
Kzo9I GATC 3 cut(s) 97, 281, 378
LmnI GCTCC 4 cut(s) 9, 129, 391, 691
Lsp1109I GCAGC 2 cut(s) 395, 491
LweI GCATC 1 cut(s) 406
MaeI CTAG 1 cut(s) 278
MaeII ACGT 2 cut(s) 161, 317
MaeIII GTNAC 1 cut(s) 151
MalI GATC 3 cut(s) 99, 283, 380
MboI GATC 3 cut(s) 97, 281, 378
MboII GAAGA 5 cut(s) 25, 53, 327, 743, 763
MhlI GDGCHC 2 cut(s) 150, 574
MluCI AATT 1 cut(s) 499
MlyI GAGTC 1 cut(s) 162
MmeI TCCRAC 1 cut(s) 435
MslI CAYNNNNRTG 1 cut(s) 194
MspI CCGG 4 cut(s) 403, 534, 579, 672
MspR9I CCNGG 2 cut(s) 404, 673
Mva1269I GAATGC 1 cut(s) 727
MvnI CGCG 3 cut(s) 449, 479, 526
MwoI GCNNNNNNNGC 6 cut(s) 179, 253, 468, 473, 523, 700
NciI CCSGG 2 cut(s) 404, 673
NdeII GATC 3 cut(s) 97, 281, 378
NlaIII CATG 4 cut(s) 193, 199, 309, 786
NlaIV GGNNCC 2 cut(s) 43, 593
NmeAIII GCCGAG 1 cut(s) 488
NmuCI GTSAC 1 cut(s) 151
PcsI WCGNNNNNNNCGW 2 cut(s) 269, 323
PctI GAATGC 1 cut(s) 727
PfeI GAWTC 2 cut(s) 391, 685
PflFI GACNNNGTC 1 cut(s) 353
PkrI GCNGC 7 cut(s) 249, 252, 255, 385, 478, 506, 528
PleI GAGTC 1 cut(s) 162
PpsI GAGTC 1 cut(s) 162
Ppu21I YACGTR 1 cut(s) 162
Psp124BI GAGCTC 1 cut(s) 150
PspN4I GGNNCC 2 cut(s) 43, 593
PspPI GGNCC 3 cut(s) 405, 591, 669
PsyI GACNNNGTC 1 cut(s) 353
RsaI GTAC 4 cut(s) 21, 164, 484, 746
RsaNI GTAC 4 cut(s) 20, 163, 483, 745
RseI CAYNNNNRTG 1 cut(s) 194
SacI GAGCTC 1 cut(s) 150
SatI GCNGC 7 cut(s) 248, 251, 254, 384, 477, 505, 527
Sau3AI GATC 3 cut(s) 97, 281, 378
Sau96I GGNCC 3 cut(s) 405, 591, 669
SchI GAGTC 1 cut(s) 162
ScrFI CCNGG 2 cut(s) 404, 673
SduI GDGCHC 2 cut(s) 150, 574
SfaNI GCATC 1 cut(s) 406
SinI GGWCC 1 cut(s) 591
SmiMI CAYNNNNRTG 1 cut(s) 194
Sse9I AATT 1 cut(s) 499
SsiI CCGC 7 cut(s) 245, 248, 251, 254, 395, 477, 526
SspMI CTAG 1 cut(s) 278
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 2 cut(s) 402, 671
TaaI ACNGT 3 cut(s) 288, 355, 617
TaiI ACGT 2 cut(s) 164, 320
TaqI TCGA 1 cut(s) 566
TasI AATT 1 cut(s) 499
TatI WGTACW 1 cut(s) 744
TauI GCSGC 5 cut(s) 250, 253, 256, 479, 529
TfiI GAWTC 2 cut(s) 391, 685
TscAI CASTG 1 cut(s) 381
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 2 cut(s) 383, 504
Tsp45I GTSAC 1 cut(s) 151
TspGWI ACGGA 2 cut(s) 261, 776
TspRI CASTG 1 cut(s) 381
Tth111I GACNNNGTC 1 cut(s) 353
VpaK11BI GGWCC 1 cut(s) 591
XspI CTAG 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.