Rh2CG289400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0015319
Physical Location & Seq
Forward (+)
32660504 .. 32661695
1192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG289400.1

Sequence Viewer

Length: 783 bp
ATGCTCCCACTAAAGCTGGTACGCTCTCTGGTCTTCGGAGGAACCATCAACAACAACCCTCTTCTTATGGACACCGACGAGGAGGAGGAGGAGGAGGATCGCAATGTCGTCAAAACCCCATTGCTCCTTTTCCTCCCAACCAAAGAGCTCGTCACCGACACGTACAGACTCGCCACCATAGCCAGAGACATGGGCATGGACTTGCACCCAACCCCTTCTCTCTCCCACATCATTCTCTCACACCCACCGCCGCCGCCGTCGTCGTCTCCGTCTCTAGGATCACCGTCCTCGTTTCCTTCAACATGGTCATCCACGTCCCTGTCGTCAACTTCTTCTCTGCCCGAGGACACAGTCCCCCTCCCTTTTCCTTCACTGATCGCAGCTCCGATTCCGCGTCTCCGGGCCTTCGTCAAGATGTCCAGAGGTCTGTTCAAGCTGGTGTTCGCGCCGTCGGAGTGCATAGCCAGCGACGCCGCGAGTACCGAGAGCCATTGGAATTGCTGCTCGGCCTCGCTGTTCTCGCGGCTCGCCGGAGATAGAATGGACACAATGGAGGGGTTTTCGAGGGCTCTGGCCGGAGTTGGGTGGTCCCTTTTCAAGACTAAGGAGAACGGTGGTGGGAAATCGGTGTATTTGTTCAGGAAGGTTGATGTGAATAGGGTTCGGGCCGGGGAGTGTAGGATTCGGGAGCTGAGGTTGCCTGCATTGGATTTTAGGAATGCCCCTTTGAGGATTTTGCAGTACATACTTCTTATGACGGATGACATCTTCTATCTGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

260

Amino Acids

28.69

Weight (kDa)

6.44

Isoelectric Point (pI)

56.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015319)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08770
fragaria_vesca FvH4_1g25250 FvH4_1g25250
malus_domestica MD15G1137000.v1.1 MD15G1137300.v1.1
prunus_persica Prupe.4G279900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0123171
rosa_multiflora Rmu_co8220114.1_g000001
rosa_roxburghii Rroxscaffold_2G00120860
rosa_rugosa Rorug02G0243600
rosa_samantha Rh2AG303100 Rh2BG311000 Rh2CG289400 Rh2DG327100
rosa_wichuraiana Rw2G024140 Rw2G024230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 394, 446, 476, 523
AciI CCGC 6 cut(s) 248, 251, 254, 392, 474, 523
AclWI GGATC 2 cut(s) 105, 286
AcoI YGGCCR 1 cut(s) 573
AcyI GRCGYC 1 cut(s) 471
AfaI GTAC 4 cut(s) 21, 164, 481, 743
AfiI CCNNNNNNNGG 3 cut(s) 275, 582, 729
AflIII ACRYGT 1 cut(s) 159
AgsI TTSAA 3 cut(s) 300, 433, 598
AjiI CACGTC 1 cut(s) 315
AluBI AGCT 5 cut(s) 16, 148, 383, 436, 691
AluI AGCT 5 cut(s) 16, 148, 383, 436, 691
Alw21I GWGCWC 1 cut(s) 150
Alw26I GTCTC 4 cut(s) 180, 270, 276, 401
AlwI GGATC 2 cut(s) 105, 286
Ama87I CYCGRG 1 cut(s) 341
AoxI GGCC 4 cut(s) 402, 507, 573, 666
ApeKI GCWGC 2 cut(s) 380, 501
ArsI GACNNNNNNTTYG 2 cut(s) 135, 167
AspLEI GCGC 1 cut(s) 448
AspS9I GGNCC 3 cut(s) 402, 588, 666
AsuC2I CCSGG 2 cut(s) 401, 670
AsuHPI GGTGA 2 cut(s) 145, 273
AvaI CYCGRG 1 cut(s) 341
AvaII GGWCC 1 cut(s) 588
BanII GRGCYC 2 cut(s) 150, 571
BbsI GAAGAC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 150
BbvCI CCTCAGC 1 cut(s) 692
BbvI GCAGC 2 cut(s) 392, 488
BccI CCATC 1 cut(s) 53
BceAI ACGGC 2 cut(s) 241, 433
BcnI CCSGG 2 cut(s) 401, 670
BcoDI GTCTC 4 cut(s) 180, 270, 276, 401
BfaI CTAG 1 cut(s) 275
BisI GCNGC 6 cut(s) 251, 254, 381, 474, 502, 524
BlsI GCNGC 6 cut(s) 252, 255, 382, 475, 503, 525
Bme1390I CCNGG 2 cut(s) 401, 670
Bme18I GGWCC 1 cut(s) 588
BmeT110I CYCGRG 1 cut(s) 341
BmgBI CACGTC 1 cut(s) 315
BmgT120I GGNCC 3 cut(s) 402, 588, 666
BmiI GGNNCC 2 cut(s) 43, 590
BmrFI CCNGG 2 cut(s) 401, 670
BpiI GAAGAC 1 cut(s) 25
Bpu10I CCTNAGC 1 cut(s) 692
BpuMI CCSGG 2 cut(s) 401, 670
BsaAI YACGTR 1 cut(s) 162
BsaHI GRCGYC 1 cut(s) 471
BsaJI CCNNGG 2 cut(s) 342, 669
BsaXI ACNNNNNCTCC 2 cut(s) 680, 710
Bsc4I CCNNNNNNNGG 3 cut(s) 275, 582, 729
Bse3DI GCAATG 2 cut(s) 109, 119
BseDI CCNNGG 2 cut(s) 342, 669
BseGI GGATG 2 cut(s) 308, 766
BseLI CCNNNNNNNGG 3 cut(s) 275, 582, 729
BseMI GCAATG 2 cut(s) 109, 119
BseMII CTCAG 1 cut(s) 683
BseRI GAGGAG 5 cut(s) 95, 98, 101, 104, 107
BseXI GCAGC 2 cut(s) 392, 488
Bsh1236I CGCG 4 cut(s) 394, 446, 476, 523
BshFI GGCC 4 cut(s) 404, 509, 575, 668
BsiHKAI GWGCWC 1 cut(s) 150
BsiHKCI CYCGRG 1 cut(s) 341
BsiSI CCGG 4 cut(s) 400, 531, 576, 669
BslFI GGGAC 3 cut(s) 301, 338, 574
BslI CCNNNNNNNGG 3 cut(s) 275, 582, 729
BsmAI GTCTC 4 cut(s) 180, 270, 276, 401
BsmBI CGTCTC 3 cut(s) 270, 276, 401
BsmFI GGGAC 3 cut(s) 301, 338, 574
BsmI GAATGC 1 cut(s) 724
BsnI GGCC 4 cut(s) 404, 509, 575, 668
BsoBI CYCGRG 1 cut(s) 341
Bsp1286I GDGCHC 2 cut(s) 150, 571
Bsp143I GATC 3 cut(s) 97, 278, 375
BspACI CCGC 6 cut(s) 248, 251, 254, 392, 474, 523
BspANI GGCC 4 cut(s) 404, 509, 575, 668
BspCNI CTCAG 1 cut(s) 684
BspFNI CGCG 4 cut(s) 394, 446, 476, 523
BspLI GGNNCC 2 cut(s) 43, 590
BspPI GGATC 2 cut(s) 105, 286
BsrDI GCAATG 2 cut(s) 109, 119
BssECI CCNNGG 2 cut(s) 342, 669
BssMI GATC 3 cut(s) 97, 278, 375
BssNI GRCGYC 1 cut(s) 471
Bst4CI ACNGT 3 cut(s) 285, 352, 614
Bst6I CTCTTC 1 cut(s) 66
BstACI GRCGYC 1 cut(s) 471
BstBAI YACGTR 1 cut(s) 162
BstC8I GCNNGC 3 cut(s) 466, 528, 702
BstDEI CTNAG 2 cut(s) 603, 692
BstF5I GGATG 2 cut(s) 308, 766
BstFNI CGCG 4 cut(s) 394, 446, 476, 523
BstHHI GCGC 1 cut(s) 448
BstKTI GATC 3 cut(s) 100, 281, 378
BstMAI GTCTC 4 cut(s) 180, 270, 276, 401
BstMBI GATC 3 cut(s) 97, 278, 375
BstMWI GCNNNNNNNGC 5 cut(s) 179, 465, 470, 520, 697
BstSCI CCNGG 2 cut(s) 399, 668
BstUI CGCG 4 cut(s) 394, 446, 476, 523
BstV1I GCAGC 2 cut(s) 392, 488
BstV2I GAAGAC 1 cut(s) 25
BstXI CCANNNNNNTGG 1 cut(s) 190
BsuRI GGCC 4 cut(s) 404, 509, 575, 668
BtrI CACGTC 1 cut(s) 315
BtsCI GGATG 2 cut(s) 308, 766
BtsIMutI CAGTG 1 cut(s) 371
Cac8I GCNNGC 3 cut(s) 466, 528, 702
CfoI GCGC 1 cut(s) 448
Cfr13I GGNCC 3 cut(s) 402, 588, 666
CseI GACGC 2 cut(s) 383, 479
Csp6I GTAC 4 cut(s) 20, 163, 480, 742
CviAII CATG 4 cut(s) 190, 196, 303, 780
CviQI GTAC 4 cut(s) 20, 163, 480, 742
DdeI CTNAG 2 cut(s) 603, 692
DpnI GATC 3 cut(s) 99, 280, 377
DpnII GATC 3 cut(s) 97, 278, 375
EaeI YGGCCR 1 cut(s) 573
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Ecl136II GAGCTC 1 cut(s) 148
Eco24I GRGCYC 2 cut(s) 150, 571
Eco47I GGWCC 1 cut(s) 588
Eco53kI GAGCTC 1 cut(s) 148
Eco88I CYCGRG 1 cut(s) 341
EcoICRI GAGCTC 1 cut(s) 148
EcoT38I GRGCYC 2 cut(s) 150, 571
Esp3I CGTCTC 3 cut(s) 270, 276, 401
FaeI CATG 4 cut(s) 193, 199, 306, 783
FaiI YATR 9 cut(s) 68, 179, 191, 197, 304, 461, 746, 755, 781
FaqI GGGAC 3 cut(s) 301, 338, 574
FatI CATG 4 cut(s) 189, 195, 302, 779
Fnu4HI GCNGC 6 cut(s) 251, 254, 381, 474, 502, 524
FokI GGATG 2 cut(s) 295, 773
FriOI GRGCYC 2 cut(s) 150, 571
Fsp4HI GCNGC 6 cut(s) 251, 254, 381, 474, 502, 524
FspBI CTAG 1 cut(s) 275
GlaI GCGC 1 cut(s) 447
GluI GCNGC 6 cut(s) 251, 254, 381, 474, 502, 524
HaeIII GGCC 4 cut(s) 404, 509, 575, 668
HapII CCGG 4 cut(s) 400, 531, 576, 669
HgaI GACGC 2 cut(s) 383, 479
HhaI GCGC 1 cut(s) 448
Hin1I GRCGYC 1 cut(s) 471
Hin1II CATG 4 cut(s) 193, 199, 306, 783
Hin6I GCGC 1 cut(s) 446
HinP1I GCGC 1 cut(s) 446
HincII GTYRAC 1 cut(s) 327
HindII GTYRAC 1 cut(s) 327
HinfI GANTC 3 cut(s) 168, 388, 682
HpaII CCGG 4 cut(s) 400, 531, 576, 669
HphI GGTGA 2 cut(s) 145, 273
Hpy166II GTNNAC 1 cut(s) 327
Hpy188I TCNGA 3 cut(s) 38, 387, 454
Hpy188III TCNNGA 5 cut(s) 412, 420, 598, 640, 686
Hpy8I GTNNAC 1 cut(s) 327
Hpy99I CGWCG 5 cut(s) 80, 262, 265, 454, 473
HpyAV CCTTC 5 cut(s) 225, 306, 378, 415, 637
HpyCH4III ACNGT 3 cut(s) 285, 352, 614
HpyCH4IV ACGT 2 cut(s) 161, 314
HpyCH4V TGCA 4 cut(s) 205, 459, 704, 739
HpyF10VI GCNNNNNNNGC 5 cut(s) 179, 465, 470, 520, 697
HpyF3I CTNAG 2 cut(s) 603, 692
HpySE526I ACGT 2 cut(s) 161, 314
Hsp92I GRCGYC 1 cut(s) 471
Hsp92II CATG 4 cut(s) 193, 199, 306, 783
HspAI GCGC 1 cut(s) 446
Kzo9I GATC 3 cut(s) 97, 278, 375
LmnI GCTCC 4 cut(s) 9, 129, 388, 688
Lsp1109I GCAGC 2 cut(s) 392, 488
MaeI CTAG 1 cut(s) 275
MaeII ACGT 2 cut(s) 161, 314
MaeIII GTNAC 1 cut(s) 151
MalI GATC 3 cut(s) 99, 280, 377
MboI GATC 3 cut(s) 97, 278, 375
MboII GAAGA 4 cut(s) 25, 53, 324, 760
MhlI GDGCHC 2 cut(s) 150, 571
MluCI AATT 1 cut(s) 496
MlyI GAGTC 1 cut(s) 162
MmeI TCCRAC 1 cut(s) 432
MslI CAYNNNNRTG 1 cut(s) 194
MspI CCGG 4 cut(s) 400, 531, 576, 669
MspR9I CCNGG 2 cut(s) 401, 670
Mva1269I GAATGC 1 cut(s) 724
MvnI CGCG 4 cut(s) 394, 446, 476, 523
MwoI GCNNNNNNNGC 5 cut(s) 179, 465, 470, 520, 697
NciI CCSGG 2 cut(s) 401, 670
NdeII GATC 3 cut(s) 97, 278, 375
NlaIII CATG 4 cut(s) 193, 199, 306, 783
NlaIV GGNNCC 2 cut(s) 43, 590
NmeAIII GCCGAG 1 cut(s) 485
NmuCI GTSAC 1 cut(s) 151
PcsI WCGNNNNNNNCGW 2 cut(s) 266, 320
PctI GAATGC 1 cut(s) 724
PfeI GAWTC 2 cut(s) 388, 682
PflFI GACNNNGTC 1 cut(s) 350
PkrI GCNGC 6 cut(s) 252, 255, 382, 475, 503, 525
PleI GAGTC 1 cut(s) 162
PpsI GAGTC 1 cut(s) 162
Ppu21I YACGTR 1 cut(s) 162
Psp124BI GAGCTC 1 cut(s) 150
PspN4I GGNNCC 2 cut(s) 43, 590
PspPI GGNCC 3 cut(s) 402, 588, 666
PsyI GACNNNGTC 1 cut(s) 350
RsaI GTAC 4 cut(s) 21, 164, 481, 743
RsaNI GTAC 4 cut(s) 20, 163, 480, 742
RseI CAYNNNNRTG 1 cut(s) 194
SacI GAGCTC 1 cut(s) 150
SatI GCNGC 6 cut(s) 251, 254, 381, 474, 502, 524
Sau3AI GATC 3 cut(s) 97, 278, 375
Sau96I GGNCC 3 cut(s) 402, 588, 666
SchI GAGTC 1 cut(s) 162
ScrFI CCNGG 2 cut(s) 401, 670
SduI GDGCHC 2 cut(s) 150, 571
SinI GGWCC 1 cut(s) 588
SmiMI CAYNNNNRTG 1 cut(s) 194
Sse9I AATT 1 cut(s) 496
SsiI CCGC 6 cut(s) 248, 251, 254, 392, 474, 523
SspMI CTAG 1 cut(s) 275
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 2 cut(s) 399, 668
TaaI ACNGT 3 cut(s) 285, 352, 614
TaiI ACGT 2 cut(s) 164, 317
TaqI TCGA 1 cut(s) 563
TasI AATT 1 cut(s) 496
TatI WGTACW 1 cut(s) 741
TauI GCSGC 4 cut(s) 253, 256, 476, 526
TfiI GAWTC 2 cut(s) 388, 682
TscAI CASTG 1 cut(s) 378
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 2 cut(s) 380, 501
Tsp45I GTSAC 1 cut(s) 151
TspGWI ACGGA 2 cut(s) 258, 773
TspRI CASTG 1 cut(s) 378
Tth111I GACNNNGTC 1 cut(s) 350
VpaK11BI GGWCC 1 cut(s) 588
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.