AT5G08790
NAC Family

NAC domain-containing protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011813
Physical Location & Seq
Reverse (-)
2858849 .. 2860558
1710 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G08790.1

Sequence Viewer

Length: 852 bp
ATGAAGTCGGAGCTAAATTTACCAGCTGGGTTCCGATTCCATCCAACGGACGAGGAGCTTGTGAAATTCTACTTGTGCCGGAAATGTGCTTCCGAGCAGATCTCGGCTCCGGTTATCGCCGAGATTGATCTCTACAAGTTCAATCCTTGGGAGCTTCCAGAGATGTCTCTGTACGGAGAGAAAGAGTGGTACTTCTTCTCACCTAGAGATCGGAAATACCCAAACGGTTCGCGTCCTAACCGGGCAGCAGGAACCGGTTATTGGAAAGCTACCGGAGCAGATAAACCGATTGGTAAACCGAAGACGTTGGGTATCAAGAAAGCACTCGTCTTCTACGCAGGGAAAGCTCCAAAAGGGATTAAGACCAATTGGATAATGCATGAGTATCGTCTCGCTAATGTTGATAGATCAGCTTCTGTTAACAAAAAGAACAACCTACGACTTGATGATTGGGTTTTATGTCGAATATACAACAAGAAAGGAACCATGGAGAAGTATTTCCCCGCGGATGAGAAGCCGAGGACCACGACAATGGCTGAACAGTCATCATCACCTTTTGATACATCAGACTCGACTTACCCGACATTGCAAGAGGATGATTCCAGCAGCTCAGGTGGTCACGGTCACGTGGTGTCACCGGATGTTTTGGAGGTTCAGAGCGAGCCTAAATGGGGAGAGCTTGAGGATGCTTTGGAAGCTTTTGATACTTCAATGTTTGGTAGTTCCATGGAGTTGTTGCAGCCTGACGCTTTTGTCCCTCAGTTCTTGTATCAGTCTGATTATTTCACTTCCTTCCAGGATCCGCCTGAGCAGAAACCATTCTTGAATTGGAGTTTTGCTCCACAGGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0007568 GO:0008150 GO:0008361 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009628 GO:0009719 GO:0009725 GO:0009743 GO:0009744 GO:0009751 GO:0009753 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010099 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032501 GO:0032502 GO:0032535 GO:0034285 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046677 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051252 GO:0051253 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0090066 GO:0090693 GO:0099402 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000026 GO:2000030 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

283

Amino Acids

32.22

Weight (kDa)

5.55

Isoelectric Point (pI)

47.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 8 - 131 5.7e-48 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011813)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08790 AT5G63790 AT5G63790
fragaria_vesca FvH4_1g25150
malus_domestica MD15G1136600.v1.1
prunus_persica Prupe.4G279600_v2.0.a1
pyrus_communis pycom15g12330 pycom15g12350 pycom520g00050
rosa_chinensis RchiOBHm_Chr2g0122871
rosa_laevigata RLG00000018719
rosa_multiflora Rmu_sc0000859.1_g000009
rosa_roxburghii Rroxscaffold_2G00121100
rosa_rugosa Rorug02G0242700
rosa_samantha Rh2AG301800 Rh2BG309200 Rh2CG287900 Rh2DG325900
rosa_wichuraiana Rw2G023930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 752
AccII CGCG 2 cut(s) 232, 506
AciI CCGC 3 cut(s) 504, 506, 803
AclWI GGATC 2 cut(s) 794, 807
AcsI RAATTY 2 cut(s) 16, 65
AcvI CACGTG 1 cut(s) 628
AdeI CACNNNGTG 1 cut(s) 631
AfaI GTAC 2 cut(s) 173, 191
AfiI CCNNNNNNNGG 3 cut(s) 46, 261, 671
AgeI ACCGGT 1 cut(s) 254
AgsI TTSAA 3 cut(s) 142, 711, 826
AjnI CCWGG 1 cut(s) 795
AjuI GAANNNNNNNTTGG 2 cut(s) 244, 276
Alw26I GTCTC 2 cut(s) 171, 395
AlwI GGATC 2 cut(s) 794, 807
AlwNI CAGNNNCTG 1 cut(s) 416
ApeKI GCWGC 3 cut(s) 245, 606, 739
ApoI RAATTY 2 cut(s) 16, 65
AsiGI ACCGGT 1 cut(s) 254
Asp700I GAANNNNTTC 2 cut(s) 497, 818
AspS9I GGNCC 1 cut(s) 522
AsuC2I CCSGG 1 cut(s) 242
AsuHPI GGTGA 3 cut(s) 192, 543, 627
AvaII GGWCC 1 cut(s) 522
BamHI GGATCC 1 cut(s) 799
BbrPI CACGTG 1 cut(s) 628
BbsI GAAGAC 2 cut(s) 308, 322
BbvI GCAGC 3 cut(s) 257, 618, 751
BccI CCATC 1 cut(s) 48
BcgI CGANNNNNNTGC 2 cut(s) 368, 402
BciT130I CCWGG 1 cut(s) 797
BcnI CCSGG 1 cut(s) 242
BcoDI GTCTC 2 cut(s) 171, 395
BfaI CTAG 1 cut(s) 204
BglII AGATCT 1 cut(s) 99
BisI GCNGC 3 cut(s) 246, 607, 740
BlsI GCNGC 3 cut(s) 247, 608, 741
Bme1390I CCNGG 2 cut(s) 242, 797
Bme18I GGWCC 1 cut(s) 522
BmgT120I GGNCC 1 cut(s) 522
BmiI GGNNCC 5 cut(s) 32, 108, 253, 484, 801
BmrFI CCNGG 2 cut(s) 242, 797
BmsI GCATC 1 cut(s) 676
BpiI GAAGAC 2 cut(s) 308, 322
BplI GAGNNNNNCTC 3 cut(s) 86, 118, 823
Bpu10I CCTNAGC 2 cut(s) 610, 807
BpuEI CTTGAG 1 cut(s) 701
BpuMI CCSGG 1 cut(s) 242
BsaAI YACGTR 1 cut(s) 628
BsaJI CCNNGG 5 cut(s) 146, 486, 504, 518, 726
BsaWI WCCGGW 4 cut(s) 109, 254, 272, 637
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 261, 671
Bse118I RCCGGY 1 cut(s) 254
Bse3DI GCAATG 1 cut(s) 584
BseBI CCWGG 1 cut(s) 797
BseDI CCNNGG 5 cut(s) 146, 486, 504, 518, 726
BseGI GGATG 5 cut(s) 40, 514, 601, 646, 691
BseLI CCNNNNNNNGG 3 cut(s) 46, 261, 671
BseMI GCAATG 1 cut(s) 584
BseMII CTCAG 3 cut(s) 624, 773, 798
BseRI GAGGAG 1 cut(s) 68
BseXI GCAGC 3 cut(s) 257, 618, 751
BseYI CCCAGC 1 cut(s) 26
Bsh1236I CGCG 2 cut(s) 232, 506
BshTI ACCGGT 1 cut(s) 254
BsiSI CCGG 6 cut(s) 79, 110, 241, 255, 273, 638
BslFI GGGAC 1 cut(s) 740
BslI CCNNNNNNNGG 3 cut(s) 46, 261, 671
BsmAI GTCTC 2 cut(s) 171, 395
BsmBI CGTCTC 1 cut(s) 395
BsmFI GGGAC 1 cut(s) 740
Bsp143I GATC 5 cut(s) 99, 127, 208, 407, 799
Bsp19I CCATGG 2 cut(s) 486, 726
BspACI CCGC 3 cut(s) 504, 506, 803
BspCNI CTCAG 3 cut(s) 623, 772, 799
BspFNI CGCG 2 cut(s) 232, 506
BspLI GGNNCC 5 cut(s) 32, 108, 253, 484, 801
BspPI GGATC 2 cut(s) 794, 807
BsrDI GCAATG 1 cut(s) 584
BsrFI RCCGGY 1 cut(s) 254
BssAI RCCGGY 1 cut(s) 254
BssECI CCNNGG 5 cut(s) 146, 486, 504, 518, 726
BssMI GATC 5 cut(s) 99, 127, 208, 407, 799
BssT1I CCWWGG 3 cut(s) 146, 486, 726
Bst2UI CCWGG 1 cut(s) 797
Bst4CI ACNGT 3 cut(s) 227, 543, 623
BstBAI YACGTR 1 cut(s) 628
BstC8I GCNNGC 1 cut(s) 662
BstDEI CTNAG 3 cut(s) 610, 759, 807
BstDSI CCRYGG 3 cut(s) 486, 504, 726
BstF5I GGATG 5 cut(s) 40, 514, 601, 646, 691
BstFNI CGCG 2 cut(s) 232, 506
BstKTI GATC 5 cut(s) 102, 130, 211, 410, 802
BstMAI GTCTC 2 cut(s) 171, 395
BstMBI GATC 5 cut(s) 99, 127, 208, 407, 799
BstMWI GCNNNNNNNGC 3 cut(s) 275, 344, 695
BstNI CCWGG 1 cut(s) 797
BstSCI CCNGG 2 cut(s) 240, 795
BstUI CGCG 2 cut(s) 232, 506
BstV1I GCAGC 3 cut(s) 257, 618, 751
BstV2I GAAGAC 2 cut(s) 308, 322
BstX2I RGATCY 2 cut(s) 99, 799
BstXI CCANNNNNNTGG 1 cut(s) 532
BstYI RGATCY 2 cut(s) 99, 799
BtgI CCRYGG 3 cut(s) 486, 504, 726
BtsCI GGATG 5 cut(s) 40, 514, 601, 646, 691
Cac8I GCNNGC 1 cut(s) 662
CaiI CAGNNNCTG 1 cut(s) 416
Cfr10I RCCGGY 1 cut(s) 254
Cfr13I GGNCC 1 cut(s) 522
Cfr42I CCGCGG 1 cut(s) 507
CseI GACGC 2 cut(s) 221, 755
Csp6I GTAC 2 cut(s) 172, 190
CspAI ACCGGT 1 cut(s) 254
CviAII CATG 3 cut(s) 380, 487, 727
CviQI GTAC 2 cut(s) 172, 190
DdeI CTNAG 3 cut(s) 610, 759, 807
DpnI GATC 5 cut(s) 101, 129, 210, 409, 801
DpnII GATC 5 cut(s) 99, 127, 208, 407, 799
DraIII CACNNNGTG 1 cut(s) 631
DrdI GACNNNNNNGTC 1 cut(s) 752
DseDI GACNNNNNNGTC 1 cut(s) 752
EciI GGCGGA 1 cut(s) 792
Eco130I CCWWGG 3 cut(s) 146, 486, 726
Eco47I GGWCC 1 cut(s) 522
Eco72I CACGTG 1 cut(s) 628
EcoRII CCWGG 1 cut(s) 795
EcoT14I CCWWGG 3 cut(s) 146, 486, 726
EcoT22I ATGCAT 1 cut(s) 381
ErhI CCWWGG 3 cut(s) 146, 486, 726
Esp3I CGTCTC 1 cut(s) 395
FaeI CATG 3 cut(s) 383, 490, 730
FaiI YATR 5 cut(s) 381, 460, 469, 488, 728
FaqI GGGAC 1 cut(s) 740
FatI CATG 3 cut(s) 379, 486, 726
FauI CCCGC 1 cut(s) 511
Fnu4HI GCNGC 3 cut(s) 246, 607, 740
FokI GGATG 5 cut(s) 27, 521, 608, 653, 698
Fsp4HI GCNGC 3 cut(s) 246, 607, 740
FspBI CTAG 1 cut(s) 204
GluI GCNGC 3 cut(s) 246, 607, 740
GsaI CCCAGC 1 cut(s) 30
HapII CCGG 6 cut(s) 79, 110, 241, 255, 273, 638
HgaI GACGC 2 cut(s) 221, 755
Hin1II CATG 3 cut(s) 383, 490, 730
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HindIII AAGCTT 1 cut(s) 696
HinfI GANTC 3 cut(s) 36, 569, 599
HpaI GTTAAC 1 cut(s) 421
HpaII CCGG 6 cut(s) 79, 110, 241, 255, 273, 638
HphI GGTGA 3 cut(s) 192, 543, 627
Hpy166II GTNNAC 2 cut(s) 296, 421
Hpy188I TCNGA 7 cut(s) 10, 35, 94, 213, 568, 657, 778
Hpy188III TCNNGA 3 cut(s) 158, 316, 823
Hpy8I GTNNAC 2 cut(s) 296, 421
HpyAV CCTTC 1 cut(s) 802
HpyCH4III ACNGT 3 cut(s) 227, 543, 623
HpyCH4IV ACGT 2 cut(s) 305, 627
HpyCH4V TGCA 3 cut(s) 379, 589, 739
HpyF10VI GCNNNNNNNGC 3 cut(s) 275, 344, 695
HpyF3I CTNAG 3 cut(s) 610, 759, 807
HpySE526I ACGT 2 cut(s) 305, 627
Hsp92II CATG 3 cut(s) 383, 490, 730
KspAI GTTAAC 1 cut(s) 421
KspI CCGCGG 1 cut(s) 507
Kzo9I GATC 5 cut(s) 99, 127, 208, 407, 799
LmnI GCTCC 7 cut(s) 10, 55, 112, 151, 275, 352, 844
Lsp1109I GCAGC 3 cut(s) 257, 618, 751
LweI GCATC 1 cut(s) 676
MaeI CTAG 1 cut(s) 204
MaeII ACGT 2 cut(s) 305, 627
MaeIII GTNAC 3 cut(s) 617, 623, 633
MalI GATC 5 cut(s) 101, 129, 210, 409, 801
MboI GATC 5 cut(s) 99, 127, 208, 407, 799
MboII GAAGA 3 cut(s) 187, 313, 322
MfeI CAATTG 1 cut(s) 367
MflI RGATCY 2 cut(s) 99, 799
MluCI AATT 4 cut(s) 16, 65, 367, 826
MlyI GAGTC 1 cut(s) 563
MmeI TCCRAC 1 cut(s) 68
MnlI CCTC 6 cut(s) 46, 513, 586, 643, 676, 768
Mph1103I ATGCAT 1 cut(s) 381
MroXI GAANNNNTTC 2 cut(s) 497, 818
MseI TTAA 2 cut(s) 360, 420
MslI CAYNNNNRTG 1 cut(s) 530
MspA1I CMGCKG 2 cut(s) 26, 506
MspI CCGG 6 cut(s) 79, 110, 241, 255, 273, 638
MspR9I CCNGG 2 cut(s) 242, 797
MunI CAATTG 1 cut(s) 367
MvaI CCWGG 1 cut(s) 797
MvnI CGCG 2 cut(s) 232, 506
MwoI GCNNNNNNNGC 3 cut(s) 275, 344, 695
NciI CCSGG 1 cut(s) 242
NcoI CCATGG 2 cut(s) 486, 726
NdeII GATC 5 cut(s) 99, 127, 208, 407, 799
NlaIII CATG 3 cut(s) 383, 490, 730
NlaIV GGNNCC 5 cut(s) 32, 108, 253, 484, 801
NmeAIII GCCGAG 3 cut(s) 83, 145, 543
NmuCI GTSAC 3 cut(s) 617, 623, 633
NsiI ATGCAT 1 cut(s) 381
PcsI WCGNNNNNNNCGW 1 cut(s) 578
PdmI GAANNNNTTC 2 cut(s) 497, 818
PfeI GAWTC 2 cut(s) 36, 599
PfoI TCCNGGA 1 cut(s) 795
PinAI ACCGGT 1 cut(s) 254
PkrI GCNGC 3 cut(s) 247, 608, 741
PleI GAGTC 1 cut(s) 563
PmaCI CACGTG 1 cut(s) 628
PmlI CACGTG 1 cut(s) 628
PpsI GAGTC 1 cut(s) 563
Ppu21I YACGTR 1 cut(s) 628
Psp6I CCWGG 1 cut(s) 795
PspCI CACGTG 1 cut(s) 628
PspFI CCCAGC 1 cut(s) 26
PspGI CCWGG 1 cut(s) 795
PspN4I GGNNCC 5 cut(s) 32, 108, 253, 484, 801
PspPI GGNCC 1 cut(s) 522
PstNI CAGNNNCTG 1 cut(s) 416
PsuI RGATCY 2 cut(s) 99, 799
PvuII CAGCTG 1 cut(s) 26
RsaI GTAC 2 cut(s) 173, 191
RsaNI GTAC 2 cut(s) 172, 190
RseI CAYNNNNRTG 1 cut(s) 530
SacII CCGCGG 1 cut(s) 507
SaqAI TTAA 2 cut(s) 360, 420
SatI GCNGC 3 cut(s) 246, 607, 740
Sau3AI GATC 5 cut(s) 99, 127, 208, 407, 799
Sau96I GGNCC 1 cut(s) 522
SchI GAGTC 1 cut(s) 563
ScrFI CCNGG 2 cut(s) 242, 797
SfaNI GCATC 1 cut(s) 676
Sfr303I CCGCGG 1 cut(s) 507
SgrBI CCGCGG 1 cut(s) 507
SinI GGWCC 1 cut(s) 522
SmiMI CAYNNNNRTG 1 cut(s) 530
SmlI CTYRAG 1 cut(s) 680
SmoI CTYRAG 1 cut(s) 680
Sse9I AATT 4 cut(s) 16, 65, 367, 826
SsiI CCGC 3 cut(s) 504, 506, 803
SspMI CTAG 1 cut(s) 204
StyD4I CCNGG 2 cut(s) 240, 795
StyI CCWWGG 3 cut(s) 146, 486, 726
TaaI ACNGT 3 cut(s) 227, 543, 623
TaiI ACGT 2 cut(s) 308, 630
TaqI TCGA 2 cut(s) 463, 572
TasI AATT 4 cut(s) 16, 65, 367, 826
TfiI GAWTC 2 cut(s) 36, 599
Tru1I TTAA 2 cut(s) 360, 420
Tru9I TTAA 2 cut(s) 360, 420
TseFI GTSAC 3 cut(s) 617, 623, 633
TseI GCWGC 3 cut(s) 245, 606, 739
Tsp45I GTSAC 3 cut(s) 617, 623, 633
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 62, 189
VpaK11BI GGWCC 1 cut(s) 522
XapI RAATTY 2 cut(s) 16, 65
XcmI CCANNNNNNNNNTGG 1 cut(s) 825
XmnI GAANNNNTTC 2 cut(s) 497, 818
XspI CTAG 1 cut(s) 204
Zsp2I ATGCAT 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.