Rh2CG287900
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0011813
Physical Location & Seq
Forward (+)
32401936 .. 32404131
2196 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG287900.1

Sequence Viewer

Length: 786 bp
ATGGCGCTTTATGGCGAGAAAGAATGGTATTTCTTTTCCCCAAGGGACAGAAAATATCCGAACGGTTCAAGGCCGAACCGGGCGGCAGGAACCGGGTACTGGAAGGCGACCGGAGCAGACAAGCACATTGGAAAGCCAAAAGCACTAGGGATCAAAAAGGCTCTTGTTTTCTATGCCGGGAAAGCCCCTAAAGGAGTCAAGACCAATTGGATCATGCATGAGTATCGACTTGCAAATGTTGATAGGTCTGCTTCCAAGAAAAACCACAACTTGAGGCTTGATGATTGGGTGCTATGCCGAATTTACAACAAGAAGGGTAGCATTGAGAAGTATAATACTGCTACCGTGGACCGGAATAAAGTGGCAACTTACTCGGAAATAATGGACCATGAGGAGAAGCCAGTATTGAAAAACATACAGTTCAATGTAGCACCATCACAAGGTCAACAAACGCCATTAGCTGCAGTACCAGTGTCACAGCACACAGATATGTTGTCCGGAAATTATTCAGCACCGAGATTGCAGCACACAACGGACTGTTCTAGCAGCTCGGATCATGTATTCTCGCCGGAGGTTCAGAGCGAGTTCCAGTGGAGTAGTCCTGAATTCAATGAATTGGACAATTCGATGAACTTGAACTTCCTTGATAACAATGACCAGTTCAATTACATGGATGGCTTCTCACTAGCAGATATTAGAGACCCTTTTGGCAATCAAGCTCAAGCTCAGCCTCAGTATCAAATGGACCAGCAGGACCTGTTCATGTACCTGCAAAATCAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

261

Amino Acids

29.86

Weight (kDa)

7.74

Isoelectric Point (pI)

41.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 4 - 77 7e-26 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011813)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08790 AT5G63790 AT5G63790
fragaria_vesca FvH4_1g25150
malus_domestica MD15G1136600.v1.1
prunus_persica Prupe.4G279600_v2.0.a1
pyrus_communis pycom15g12330 pycom15g12350 pycom520g00050
rosa_chinensis RchiOBHm_Chr2g0122871
rosa_laevigata RLG00000018719
rosa_multiflora Rmu_sc0000859.1_g000009
rosa_roxburghii Rroxscaffold_2G00121100
rosa_rugosa Rorug02G0242700
rosa_samantha Rh2AG301800 Rh2BG309200 Rh2CG287900 Rh2DG325900
rosa_wichuraiana Rw2G023930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 777
AccIII TCCGGA 1 cut(s) 497
AciI CCGC 1 cut(s) 83
AclWI GGATC 3 cut(s) 158, 218, 561
AcsI RAATTY 3 cut(s) 300, 605, 780
AfaI GTAC 3 cut(s) 98, 468, 767
AfiI CCNNNNNNNGG 3 cut(s) 99, 351, 440
AgsI TTSAA 6 cut(s) 69, 409, 424, 610, 637, 664
AluBI AGCT 4 cut(s) 461, 549, 719, 725
AluI AGCT 4 cut(s) 461, 549, 719, 725
Alw26I GTCTC 1 cut(s) 693
AlwI GGATC 3 cut(s) 158, 218, 561
AlwNI CAGNNNCTG 1 cut(s) 757
Aor13HI TCCGGA 1 cut(s) 497
AoxI GGCC 1 cut(s) 71
ApeKI GCWGC 3 cut(s) 461, 523, 546
ApoI RAATTY 3 cut(s) 300, 605, 780
Asp700I GAANNNNTTC 1 cut(s) 505
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 4 cut(s) 349, 385, 745, 754
AsuC2I CCSGG 3 cut(s) 80, 94, 178
AvaII GGWCC 4 cut(s) 349, 385, 745, 754
BbvI GCAGC 3 cut(s) 448, 535, 558
BccI CCATC 2 cut(s) 442, 668
BcgI CGANNNNNNTGC 4 cut(s) 206, 240, 354, 388
BcnI CCSGG 3 cut(s) 80, 94, 178
BcoDI GTCTC 1 cut(s) 693
BfaI CTAG 3 cut(s) 146, 543, 686
BfmI CTRYAG 1 cut(s) 462
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 777
BisI GCNGC 4 cut(s) 84, 462, 524, 547
BlpI GCTNAGC 1 cut(s) 726
BlsI GCNGC 4 cut(s) 85, 463, 525, 548
Bme1390I CCNGG 3 cut(s) 80, 94, 178
Bme18I GGWCC 4 cut(s) 349, 385, 745, 754
BmgT120I GGNCC 4 cut(s) 349, 385, 745, 754
BmiI GGNNCC 1 cut(s) 91
BmrFI CCNGG 3 cut(s) 80, 94, 178
Bpu1102I GCTNAGC 1 cut(s) 726
BpuEI CTTGAG 2 cut(s) 292, 705
BpuMI CCSGG 3 cut(s) 80, 94, 178
BsaI GGTCTC 1 cut(s) 693
BsaJI CCNNGG 2 cut(s) 41, 345
BsaWI WCCGGW 3 cut(s) 110, 351, 497
Bsc4I CCNNNNNNNGG 3 cut(s) 99, 351, 440
Bse1I ACTGG 5 cut(s) 104, 401, 470, 589, 658
BseAI TCCGGA 1 cut(s) 497
BseDI CCNNGG 2 cut(s) 41, 345
BseGI GGATG 1 cut(s) 679
BseLI CCNNNNNNNGG 3 cut(s) 99, 351, 440
BseMII CTCAG 2 cut(s) 740, 746
BseNI ACTGG 5 cut(s) 104, 401, 470, 589, 658
BseRI GAGGAG 1 cut(s) 407
BseXI GCAGC 3 cut(s) 448, 535, 558
Bsh1285I CGRYCG 1 cut(s) 111
BshFI GGCC 1 cut(s) 73
BsiEI CGRYCG 1 cut(s) 111
BsiSI CCGG 7 cut(s) 79, 93, 111, 177, 352, 498, 569
BslFI GGGAC 1 cut(s) 59
BslI CCNNNNNNNGG 3 cut(s) 99, 351, 440
BsmAI GTCTC 1 cut(s) 693
BsmFI GGGAC 1 cut(s) 59
BsnI GGCC 1 cut(s) 73
Bso31I GGTCTC 1 cut(s) 693
Bsp13I TCCGGA 1 cut(s) 497
Bsp143I GATC 3 cut(s) 150, 210, 553
Bsp1720I GCTNAGC 1 cut(s) 726
BspACI CCGC 1 cut(s) 83
BspANI GGCC 1 cut(s) 73
BspCNI CTCAG 2 cut(s) 739, 745
BspEI TCCGGA 1 cut(s) 497
BspLI GGNNCC 1 cut(s) 91
BspMAI CTGCAG 1 cut(s) 466
BspMI ACCTGC 1 cut(s) 777
BspPI GGATC 3 cut(s) 158, 218, 561
BspTNI GGTCTC 1 cut(s) 693
BsrI ACTGG 5 cut(s) 104, 401, 470, 589, 658
BssECI CCNNGG 2 cut(s) 41, 345
BssMI GATC 3 cut(s) 150, 210, 553
BssT1I CCWWGG 1 cut(s) 41
Bst4CI ACNGT 4 cut(s) 65, 346, 420, 539
BstDEI CTNAG 2 cut(s) 726, 732
BstDSI CCRYGG 1 cut(s) 345
BstF5I GGATG 1 cut(s) 679
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 3 cut(s) 153, 213, 556
BstMAI GTCTC 1 cut(s) 693
BstMBI GATC 3 cut(s) 150, 210, 553
BstMCI CGRYCG 1 cut(s) 111
BstMWI GCNNNNNNNGC 2 cut(s) 113, 182
BstSCI CCNGG 3 cut(s) 78, 92, 176
BstSFI CTRYAG 1 cut(s) 462
BstV1I GCAGC 3 cut(s) 448, 535, 558
BsuRI GGCC 1 cut(s) 73
BtgI CCRYGG 1 cut(s) 345
BtsCI GGATG 1 cut(s) 679
BtsIMutI CAGTG 2 cut(s) 477, 596
BveI ACCTGC 1 cut(s) 777
CaiI CAGNNNCTG 1 cut(s) 757
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 4 cut(s) 349, 385, 745, 754
Csp6I GTAC 3 cut(s) 97, 467, 766
CviAII CATG 6 cut(s) 214, 218, 389, 557, 670, 763
CviQI GTAC 3 cut(s) 97, 467, 766
DdeI CTNAG 2 cut(s) 726, 732
DpnI GATC 3 cut(s) 152, 212, 555
DpnII GATC 3 cut(s) 150, 210, 553
Eco130I CCWWGG 1 cut(s) 41
Eco31I GGTCTC 1 cut(s) 693
Eco47I GGWCC 4 cut(s) 349, 385, 745, 754
EcoO109I RGGNCCY 1 cut(s) 754
EcoRI GAATTC 1 cut(s) 605
EcoT14I CCWWGG 1 cut(s) 41
EcoT22I ATGCAT 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 41
FaeI CATG 6 cut(s) 217, 221, 392, 560, 673, 766
FaqI GGGAC 1 cut(s) 59
FatI CATG 6 cut(s) 213, 217, 388, 556, 669, 762
Fnu4HI GCNGC 4 cut(s) 84, 462, 524, 547
FokI GGATG 1 cut(s) 686
Fsp4HI GCNGC 4 cut(s) 84, 462, 524, 547
FspBI CTAG 3 cut(s) 146, 543, 686
GlaI GCGC 1 cut(s) 6
GluI GCNGC 4 cut(s) 84, 462, 524, 547
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 73
HapII CCGG 7 cut(s) 79, 93, 111, 177, 352, 498, 569
HhaI GCGC 1 cut(s) 7
Hin1II CATG 6 cut(s) 217, 221, 392, 560, 673, 766
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 446
HindII GTYRAC 1 cut(s) 446
HinfI GANTC 1 cut(s) 195
HpaII CCGG 7 cut(s) 79, 93, 111, 177, 352, 498, 569
Hpy166II GTNNAC 2 cut(s) 349, 446
Hpy188I TCNGA 4 cut(s) 60, 376, 553, 579
Hpy188III TCNNGA 3 cut(s) 199, 498, 602
Hpy8I GTNNAC 2 cut(s) 349, 446
HpyAV CCTTC 2 cut(s) 97, 307
HpyCH4III ACNGT 4 cut(s) 65, 346, 420, 539
HpyCH4V TGCA 5 cut(s) 217, 233, 464, 523, 772
HpyF10VI GCNNNNNNNGC 2 cut(s) 113, 182
HpyF3I CTNAG 2 cut(s) 726, 732
Hsp92II CATG 6 cut(s) 217, 221, 392, 560, 673, 766
HspAI GCGC 1 cut(s) 5
Kpn2I TCCGGA 1 cut(s) 497
Kzo9I GATC 3 cut(s) 150, 210, 553
LmnI GCTCC 1 cut(s) 113
Lsp1109I GCAGC 3 cut(s) 448, 535, 558
MaeI CTAG 3 cut(s) 146, 543, 686
MaeIII GTNAC 1 cut(s) 474
MalI GATC 3 cut(s) 152, 212, 555
MboI GATC 3 cut(s) 150, 210, 553
MfeI CAATTG 1 cut(s) 205
MluCI AATT 8 cut(s) 205, 300, 502, 605, 614, 622, 664, 780
MlyI GAGTC 1 cut(s) 204
MnlI CCTC 4 cut(s) 267, 385, 565, 741
Mph1103I ATGCAT 1 cut(s) 219
MroI TCCGGA 1 cut(s) 497
MroXI GAANNNNTTC 1 cut(s) 505
MseI TTAA 1 cut(s) 784
MslI CAYNNNNRTG 1 cut(s) 488
MspI CCGG 7 cut(s) 79, 93, 111, 177, 352, 498, 569
MspR9I CCNGG 3 cut(s) 80, 94, 178
MunI CAATTG 1 cut(s) 205
MwoI GCNNNNNNNGC 2 cut(s) 113, 182
NciI CCSGG 3 cut(s) 80, 94, 178
NdeII GATC 3 cut(s) 150, 210, 553
NlaIII CATG 6 cut(s) 217, 221, 392, 560, 673, 766
NlaIV GGNNCC 1 cut(s) 91
NmuCI GTSAC 1 cut(s) 474
NsiI ATGCAT 1 cut(s) 219
PdmI GAANNNNTTC 1 cut(s) 505
PkrI GCNGC 4 cut(s) 85, 463, 525, 548
PleI GAGTC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 203
PpuMI RGGWCCY 1 cut(s) 754
Psp5II RGGWCCY 1 cut(s) 754
PspN4I GGNNCC 1 cut(s) 91
PspPI GGNCC 4 cut(s) 349, 385, 745, 754
PspPPI RGGWCCY 1 cut(s) 754
PstI CTGCAG 1 cut(s) 466
PstNI CAGNNNCTG 1 cut(s) 757
RsaI GTAC 3 cut(s) 98, 468, 767
RsaNI GTAC 3 cut(s) 97, 467, 766
RseI CAYNNNNRTG 1 cut(s) 488
SaqAI TTAA 1 cut(s) 784
SatI GCNGC 4 cut(s) 84, 462, 524, 547
Sau3AI GATC 3 cut(s) 150, 210, 553
Sau96I GGNCC 4 cut(s) 349, 385, 745, 754
SchI GAGTC 1 cut(s) 204
ScrFI CCNGG 3 cut(s) 80, 94, 178
SetI ASST 9 cut(s) 248, 445, 463, 551, 576, 721, 727, 759, 771
SfcI CTRYAG 1 cut(s) 462
SinI GGWCC 4 cut(s) 349, 385, 745, 754
SmiMI CAYNNNNRTG 1 cut(s) 488
SmlI CTYRAG 2 cut(s) 271, 720
SmoI CTYRAG 2 cut(s) 271, 720
Sse9I AATT 8 cut(s) 205, 300, 502, 605, 614, 622, 664, 780
SsiI CCGC 1 cut(s) 83
SspMI CTAG 3 cut(s) 146, 543, 686
StyD4I CCNGG 3 cut(s) 78, 92, 176
StyI CCWWGG 1 cut(s) 41
TaaI ACNGT 4 cut(s) 65, 346, 420, 539
TaqI TCGA 2 cut(s) 226, 626
TasI AATT 8 cut(s) 205, 300, 502, 605, 614, 622, 664, 780
TauI GCSGC 1 cut(s) 86
Tru1I TTAA 1 cut(s) 784
Tru9I TTAA 1 cut(s) 784
TscAI CASTG 2 cut(s) 477, 596
TseFI GTSAC 1 cut(s) 474
TseI GCWGC 3 cut(s) 461, 523, 546
Tsp45I GTSAC 1 cut(s) 474
TspDTI ATGAA 3 cut(s) 627, 644, 751
TspGWI ACGGA 1 cut(s) 548
TspRI CASTG 2 cut(s) 477, 596
VpaK11BI GGWCC 4 cut(s) 349, 385, 745, 754
XapI RAATTY 3 cut(s) 300, 605, 780
XmnI GAANNNNTTC 1 cut(s) 505
XspI CTAG 3 cut(s) 146, 543, 686
Zsp2I ATGCAT 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.