Prupe.4G279600_v2.0.a1
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0011813
Physical Location & Seq
Forward (+)
23605886 .. 23608135
2250 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G279600.1

Sequence Viewer

Length: 879 bp
ATGGGAAGTGGAAGTGAGTTGGAGTTACCGCCAGGGTTCAGATTTCACCCAACGGACGAGGAGTTGGTGAATTATTACTTGTGCCGGAAATGTGCTGGGCAGCCTCTCGCTGTTCCCATCATCAAAGAGATTGATCTTTACAAGTTTGATCCTTGGCAGCTACCTGATATGGCTCTTTATGGAGAAAAAGAGTGGTATTTCTTTTCGCCAAGGGATAGAAAATATCCGAACGGTTCAAGGCCGAACCGGGCAGCAGGAACCGGGTACTGGAAGGCGACCGGGGCAGACAAGCACATTGGAAAGCCCAAGGCACTTGGGATTAAAAAGGCACTCGTGTTCTACGCTGGCAAAGCTCCTAAAGGAGTTAAAACCAATTGGATCATGCACGAGTATCGCCTTGCAAATGTCGATAGGTCGGCTTCCAAGAAAAACAACAACAACTTGAGGCTTGATGATTGGGTGCTGTGCCGAATATACAACAAGAAAGGTAGCATAGAGAAATATAACGTTGCCATGGAGCGCAGTAAAATGACCAAATACCCAGAAATATTGCATGAGCAAAAACCAGAAATGACCCAAATGCCACCACCCCATACGGATATGTCGTCGATGGATTCAGCACCGAGGGTGCAGCAGACGACGGACTACTCTAGCTGCTCGGAGCACGTGCTGTCGCCAGAGGTCACGTGGGAGAAGGAGGTCCAAAGTGAGCTACAATGGAGCGGTGATGAATTAGAGAATTCCTTTAATACCCTTGATAATCAGTTCATCAATTACATGGATGGCTTCTCAGATATTCTTGACTCTTTTGGCGCTGCTCAGCCTCAGTACCAAATGGACCAGCAGAACATGTTTGCCTACTTACAAACCCAATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

293

Amino Acids

33.72

Weight (kDa)

6.11

Isoelectric Point (pI)

43.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011813)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08790 AT5G63790 AT5G63790
fragaria_vesca FvH4_1g25150
malus_domestica MD15G1136600.v1.1
prunus_persica Prupe.4G279600_v2.0.a1
pyrus_communis pycom15g12330 pycom15g12350 pycom520g00050
rosa_chinensis RchiOBHm_Chr2g0122871
rosa_laevigata RLG00000018719
rosa_multiflora Rmu_sc0000859.1_g000009
rosa_roxburghii Rroxscaffold_2G00121100
rosa_rugosa Rorug02G0242700
rosa_samantha Rh2AG301800 Rh2BG309200 Rh2CG287900 Rh2DG325900
rosa_wichuraiana Rw2G023930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 723
AciI CCGC 2 cut(s) 29, 723
AclI AACGTT 1 cut(s) 507
AclWI GGATC 2 cut(s) 143, 386
AcsI RAATTY 1 cut(s) 739
AcvI CACGTG 2 cut(s) 667, 687
AfaI GTAC 2 cut(s) 266, 830
AfiI CCNNNNNNNGG 1 cut(s) 267
AflIII ACRYGT 1 cut(s) 849
AgsI TTSAA 1 cut(s) 237
AjnI CCWGG 1 cut(s) 31
AluBI AGCT 4 cut(s) 160, 353, 654, 712
AluI AGCT 4 cut(s) 160, 353, 654, 712
Alw21I GWGCWC 1 cut(s) 666
AlwI GGATC 2 cut(s) 143, 386
AoxI GGCC 1 cut(s) 239
ApeKI GCWGC 6 cut(s) 100, 157, 251, 631, 654, 815
ApoI RAATTY 1 cut(s) 739
AspLEI GCGC 2 cut(s) 522, 815
AspS9I GGNCC 2 cut(s) 700, 838
AsuC2I CCSGG 3 cut(s) 248, 262, 280
AsuHPI GGTGA 3 cut(s) 38, 79, 737
AvaII GGWCC 2 cut(s) 700, 838
BauI CACGAG 2 cut(s) 332, 386
BbrPI CACGTG 2 cut(s) 667, 687
Bbv12I GWGCWC 1 cut(s) 666
BbvI GCAGC 6 cut(s) 112, 169, 263, 641, 643, 802
BccI CCATC 3 cut(s) 125, 604, 776
BcgI CGANNNNNNTGC 2 cut(s) 374, 408
BciT130I CCWGG 1 cut(s) 33
BcnI CCSGG 3 cut(s) 248, 262, 280
BfaI CTAG 1 cut(s) 651
BfoI RGCGCY 1 cut(s) 816
BisI GCNGC 6 cut(s) 101, 158, 252, 632, 655, 816
BlpI GCTNAGC 1 cut(s) 819
BlsI GCNGC 6 cut(s) 102, 159, 253, 633, 656, 817
Bme1390I CCNGG 4 cut(s) 33, 248, 262, 280
Bme18I GGWCC 2 cut(s) 700, 838
BmgT120I GGNCC 2 cut(s) 700, 838
BmiI GGNNCC 1 cut(s) 259
BmrFI CCNGG 4 cut(s) 33, 248, 262, 280
Bpu1102I GCTNAGC 1 cut(s) 819
BpuEI CTTGAG 1 cut(s) 463
BpuMI CCSGG 3 cut(s) 248, 262, 280
BsaAI YACGTR 2 cut(s) 667, 687
BsaJI CCNNGG 7 cut(s) 32, 152, 209, 279, 306, 513, 623
Bsc4I CCNNNNNNNGG 1 cut(s) 267
Bse1I ACTGG 1 cut(s) 272
BseBI CCWGG 1 cut(s) 33
BseDI CCNNGG 7 cut(s) 32, 152, 209, 279, 306, 513, 623
BseGI GGATG 1 cut(s) 787
BseLI CCNNNNNNNGG 1 cut(s) 267
BseMII CTCAG 3 cut(s) 804, 833, 839
BseNI ACTGG 1 cut(s) 272
BseRI GAGGAG 1 cut(s) 74
BseXI GCAGC 6 cut(s) 112, 169, 263, 641, 643, 802
BseYI CCCAGC 1 cut(s) 95
BsgI GTGCAG 1 cut(s) 650
Bsh1285I CGRYCG 1 cut(s) 279
BshFI GGCC 1 cut(s) 241
BsiEI CGRYCG 1 cut(s) 279
BsiHKAI GWGCWC 1 cut(s) 666
BsiSI CCGG 4 cut(s) 85, 247, 261, 279
BslI CCNNNNNNNGG 1 cut(s) 267
BsnI GGCC 1 cut(s) 241
Bsp1286I GDGCHC 1 cut(s) 666
Bsp143I GATC 3 cut(s) 133, 148, 378
Bsp1720I GCTNAGC 1 cut(s) 819
Bsp19I CCATGG 1 cut(s) 513
BspACI CCGC 2 cut(s) 29, 723
BspANI GGCC 1 cut(s) 241
BspCNI CTCAG 3 cut(s) 803, 832, 838
BspLI GGNNCC 1 cut(s) 259
BspPI GGATC 2 cut(s) 143, 386
BsrBI CCGCTC 1 cut(s) 723
BsrI ACTGG 1 cut(s) 272
BssECI CCNNGG 7 cut(s) 32, 152, 209, 279, 306, 513, 623
BssMI GATC 3 cut(s) 133, 148, 378
BssSI CACGAG 2 cut(s) 332, 386
BssT1I CCWWGG 4 cut(s) 152, 209, 306, 513
Bst2BI CACGAG 2 cut(s) 332, 386
Bst2UI CCWGG 1 cut(s) 33
Bst4CI ACNGT 1 cut(s) 233
BstBAI YACGTR 2 cut(s) 667, 687
BstC8I GCNNGC 1 cut(s) 346
BstDEI CTNAG 3 cut(s) 790, 819, 825
BstDSI CCRYGG 1 cut(s) 513
BstF5I GGATG 1 cut(s) 787
BstH2I RGCGCY 1 cut(s) 816
BstHHI GCGC 2 cut(s) 522, 815
BstKTI GATC 3 cut(s) 136, 151, 381
BstMBI GATC 3 cut(s) 133, 148, 378
BstMCI CGRYCG 1 cut(s) 279
BstMWI GCNNNNNNNGC 2 cut(s) 281, 350
BstNI CCWGG 1 cut(s) 33
BstNSI RCATGY 1 cut(s) 853
BstSCI CCNGG 4 cut(s) 31, 246, 260, 278
BstV1I GCAGC 6 cut(s) 112, 169, 263, 641, 643, 802
BsuRI GGCC 1 cut(s) 241
BtgI CCRYGG 1 cut(s) 513
BtsCI GGATG 1 cut(s) 787
Cac8I GCNNGC 1 cut(s) 346
CfoI GCGC 2 cut(s) 522, 815
Cfr13I GGNCC 2 cut(s) 700, 838
Csp6I GTAC 2 cut(s) 265, 829
CviAII CATG 5 cut(s) 382, 514, 554, 778, 850
CviQI GTAC 2 cut(s) 265, 829
DdeI CTNAG 3 cut(s) 790, 819, 825
DpnI GATC 3 cut(s) 135, 150, 380
DpnII GATC 3 cut(s) 133, 148, 378
Eco130I CCWWGG 4 cut(s) 152, 209, 306, 513
Eco47I GGWCC 2 cut(s) 700, 838
Eco72I CACGTG 2 cut(s) 667, 687
EcoRI GAATTC 1 cut(s) 739
EcoRII CCWGG 1 cut(s) 31
EcoT14I CCWWGG 4 cut(s) 152, 209, 306, 513
ErhI CCWWGG 4 cut(s) 152, 209, 306, 513
FaeI CATG 5 cut(s) 385, 517, 557, 781, 853
FatI CATG 5 cut(s) 381, 513, 553, 777, 849
Fnu4HI GCNGC 6 cut(s) 101, 158, 252, 632, 655, 816
FokI GGATG 1 cut(s) 794
Fsp4HI GCNGC 6 cut(s) 101, 158, 252, 632, 655, 816
FspBI CTAG 1 cut(s) 651
GlaI GCGC 2 cut(s) 521, 814
GluI GCNGC 6 cut(s) 101, 158, 252, 632, 655, 816
GsaI CCCAGC 1 cut(s) 99
HaeII RGCGCY 1 cut(s) 816
HaeIII GGCC 1 cut(s) 241
HapII CCGG 4 cut(s) 85, 247, 261, 279
HhaI GCGC 2 cut(s) 522, 815
Hin1II CATG 5 cut(s) 385, 517, 557, 781, 853
Hin6I GCGC 2 cut(s) 520, 813
HinP1I GCGC 2 cut(s) 520, 813
HinfI GANTC 2 cut(s) 614, 803
HpaII CCGG 4 cut(s) 85, 247, 261, 279
HphI GGTGA 3 cut(s) 38, 79, 737
Hpy188I TCNGA 4 cut(s) 41, 228, 661, 793
Hpy188III TCNNGA 1 cut(s) 800
Hpy99I CGWCG 2 cut(s) 610, 643
HpyAV CCTTC 2 cut(s) 265, 688
HpyCH4III ACNGT 1 cut(s) 233
HpyCH4IV ACGT 3 cut(s) 507, 666, 686
HpyCH4V TGCA 4 cut(s) 385, 401, 553, 631
HpyF10VI GCNNNNNNNGC 2 cut(s) 281, 350
HpyF3I CTNAG 3 cut(s) 790, 819, 825
HpySE526I ACGT 3 cut(s) 507, 666, 686
Hsp92II CATG 5 cut(s) 385, 517, 557, 781, 853
HspAI GCGC 2 cut(s) 520, 813
Kzo9I GATC 3 cut(s) 133, 148, 378
LmnI GCTCC 4 cut(s) 358, 517, 661, 720
Lsp1109I GCAGC 6 cut(s) 112, 169, 263, 641, 643, 802
MaeI CTAG 1 cut(s) 651
MaeII ACGT 3 cut(s) 507, 666, 686
MaeIII GTNAC 2 cut(s) 24, 682
MalI GATC 3 cut(s) 135, 150, 380
MbiI CCGCTC 1 cut(s) 723
MboI GATC 3 cut(s) 133, 148, 378
MfeI CAATTG 1 cut(s) 373
MhlI GDGCHC 1 cut(s) 666
MluCI AATT 6 cut(s) 70, 373, 731, 739, 772, 872
MlyI GAGTC 1 cut(s) 797
MnlI CCTC 7 cut(s) 52, 114, 438, 618, 673, 691, 834
MseI TTAA 4 cut(s) 321, 366, 747, 877
MspI CCGG 4 cut(s) 85, 247, 261, 279
MspR9I CCNGG 4 cut(s) 33, 248, 262, 280
MunI CAATTG 1 cut(s) 373
MvaI CCWGG 1 cut(s) 33
MwoI GCNNNNNNNGC 2 cut(s) 281, 350
NciI CCSGG 3 cut(s) 248, 262, 280
NcoI CCATGG 1 cut(s) 513
NdeII GATC 3 cut(s) 133, 148, 378
NlaIII CATG 5 cut(s) 385, 517, 557, 781, 853
NlaIV GGNNCC 1 cut(s) 259
NmuCI GTSAC 1 cut(s) 682
NspI RCATGY 1 cut(s) 853
PciI ACATGT 1 cut(s) 849
PcsI WCGNNNNNNNCGW 1 cut(s) 602
PfeI GAWTC 1 cut(s) 614
PkrI GCNGC 6 cut(s) 102, 159, 253, 633, 656, 817
PleI GAGTC 1 cut(s) 797
PmaCI CACGTG 2 cut(s) 667, 687
PmlI CACGTG 2 cut(s) 667, 687
PpsI GAGTC 1 cut(s) 797
Ppu21I YACGTR 2 cut(s) 667, 687
PscI ACATGT 1 cut(s) 849
Psp1406I AACGTT 1 cut(s) 507
Psp6I CCWGG 1 cut(s) 31
PspCI CACGTG 2 cut(s) 667, 687
PspFI CCCAGC 1 cut(s) 95
PspGI CCWGG 1 cut(s) 31
PspN4I GGNNCC 1 cut(s) 259
PspPI GGNCC 2 cut(s) 700, 838
RsaI GTAC 2 cut(s) 266, 830
RsaNI GTAC 2 cut(s) 265, 829
SaqAI TTAA 4 cut(s) 321, 366, 747, 877
SatI GCNGC 6 cut(s) 101, 158, 252, 632, 655, 816
Sau3AI GATC 3 cut(s) 133, 148, 378
Sau96I GGNCC 2 cut(s) 700, 838
SchI GAGTC 1 cut(s) 797
ScrFI CCNGG 4 cut(s) 33, 248, 262, 280
SduI GDGCHC 1 cut(s) 666
SinI GGWCC 2 cut(s) 700, 838
SmlI CTYRAG 1 cut(s) 442
SmoI CTYRAG 1 cut(s) 442
Sse9I AATT 6 cut(s) 70, 373, 731, 739, 772, 872
SsiI CCGC 2 cut(s) 29, 723
SspI AATATT 1 cut(s) 549
SspMI CTAG 1 cut(s) 651
StyD4I CCNGG 4 cut(s) 31, 246, 260, 278
StyI CCWWGG 4 cut(s) 152, 209, 306, 513
TaaI ACNGT 1 cut(s) 233
TaiI ACGT 3 cut(s) 510, 669, 689
TaqI TCGA 2 cut(s) 408, 608
TasI AATT 6 cut(s) 70, 373, 731, 739, 772, 872
TfiI GAWTC 1 cut(s) 614
Tru1I TTAA 4 cut(s) 321, 366, 747, 877
Tru9I TTAA 4 cut(s) 321, 366, 747, 877
TseFI GTSAC 1 cut(s) 682
TseI GCWGC 6 cut(s) 100, 157, 251, 631, 654, 815
Tsp45I GTSAC 1 cut(s) 682
TspDTI ATGAA 2 cut(s) 744, 757
TspGWI ACGGA 3 cut(s) 68, 611, 656
VpaK11BI GGWCC 2 cut(s) 700, 838
XapI RAATTY 1 cut(s) 739
XceI RCATGY 1 cut(s) 853
XcmI CCANNNNNNNNNTGG 1 cut(s) 684
XspI CTAG 1 cut(s) 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.