pycom520g00050
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_520
OG0011813
Physical Location & Seq
Reverse (-)
120801 .. 121557
757 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom520g00050.2

Sequence Viewer

Length: 492 bp
ATGCACGAGTACCGCCTCGCCAATGTCGACCGCTCCGCGGCCGCCGCCAAGAAACATAAAAACCTCAGGCTTGATGATTGGGTACTATGCCGCATATACAATAAGAAGGTCACCAATAAAATGACCAAGTACCCAGAAATATTGGACGAGCAAAAACCGGAAATGACCATAATGCCGCCACCACCACAAACACATCACATGATGGATATGTCGATGGAATCAGTACCCAGGTTGCAGCAGACGGCGGACTACTCGAGCTGCTCGGAGCATGTGCTGTCGCCGGAGGTTACGCCGGAGAAAGAGGTCCAAAGTGTACTGAAATGGAGCAATGAAGTGGAGAATGCCTTTAATACTGTTGATAATCAGTTCCTGAATTGCATGGATGGCTTCTCGGATATTATGAACCCTTTTGGGGGCCGAATGAAAATGGAGCAGCAGCAACAATCCTACCAGTTGCAGGACAGGTTCTCCTACCCCCACGACCAATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

164

Amino Acids

19.15

Weight (kDa)

5.66

Isoelectric Point (pI)

62.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011813)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08790 AT5G63790 AT5G63790
fragaria_vesca FvH4_1g25150
malus_domestica MD15G1136600.v1.1
prunus_persica Prupe.4G279600_v2.0.a1
pyrus_communis pycom15g12330 pycom15g12350 pycom520g00050
rosa_chinensis RchiOBHm_Chr2g0122871
rosa_laevigata RLG00000018719
rosa_multiflora Rmu_sc0000859.1_g000009
rosa_roxburghii Rroxscaffold_2G00121100
rosa_rugosa Rorug02G0242700
rosa_samantha Rh2AG301800 Rh2BG309200 Rh2CG287900 Rh2DG325900
rosa_wichuraiana Rw2G023930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 33
AccI GTMKAC 1 cut(s) 27
AccII CGCG 1 cut(s) 38
AciI CCGC 9 cut(s) 13, 31, 36, 38, 42, 45, 91, 176, 245
AcoI YGGCCR 1 cut(s) 39
AfaI GTAC 5 cut(s) 11, 84, 131, 225, 315
AfiI CCNNNNNNNGG 4 cut(s) 37, 412, 413, 457
AjnI CCWGG 1 cut(s) 227
AluBI AGCT 1 cut(s) 258
AluI AGCT 1 cut(s) 258
AlwNI CAGNNNCTG 1 cut(s) 370
Ama87I CYCGRG 1 cut(s) 253
AoxI GGCC 2 cut(s) 39, 415
ApeKI GCWGC 4 cut(s) 235, 258, 433, 436
AspS9I GGNCC 2 cut(s) 304, 415
AsuHPI GGTGA 1 cut(s) 103
AvaI CYCGRG 1 cut(s) 253
AvaII GGWCC 1 cut(s) 304
AxyI CCTNAGG 1 cut(s) 65
BauI CACGAG 1 cut(s) 5
BbvI GCAGC 4 cut(s) 245, 247, 445, 448
BccI CCATC 3 cut(s) 196, 208, 377
BceAI ACGGC 1 cut(s) 258
BciT130I CCWGG 1 cut(s) 229
BisI GCNGC 9 cut(s) 39, 42, 45, 91, 176, 236, 259, 434, 437
BlsI GCNGC 9 cut(s) 40, 43, 46, 92, 177, 237, 260, 435, 438
Bme1390I CCNGG 1 cut(s) 229
Bme18I GGWCC 1 cut(s) 304
BmeT110I CYCGRG 1 cut(s) 253
BmgT120I GGNCC 2 cut(s) 304, 415
BmiI GGNNCC 1 cut(s) 416
BmrFI CCNGG 1 cut(s) 229
BsaJI CCNNGG 2 cut(s) 36, 227
BsaWI WCCGGW 1 cut(s) 157
BsaXI ACNNNNNCTCC 2 cut(s) 452, 482
Bsc4I CCNNNNNNNGG 4 cut(s) 37, 412, 413, 457
Bse1I ACTGG 1 cut(s) 451
Bse21I CCTNAGG 1 cut(s) 65
Bse3DI GCAATG 1 cut(s) 334
BseBI CCWGG 1 cut(s) 229
BseDI CCNNGG 2 cut(s) 36, 227
BseGI GGATG 1 cut(s) 388
BseLI CCNNNNNNNGG 4 cut(s) 37, 412, 413, 457
BseMI GCAATG 1 cut(s) 334
BseMII CTCAG 1 cut(s) 79
BseNI ACTGG 1 cut(s) 451
BseX3I CGGCCG 1 cut(s) 39
BseXI GCAGC 4 cut(s) 245, 247, 445, 448
Bsh1236I CGCG 1 cut(s) 38
Bsh1285I CGRYCG 2 cut(s) 31, 42
BshFI GGCC 2 cut(s) 41, 417
BsiEI CGRYCG 2 cut(s) 31, 42
BsiHKCI CYCGRG 1 cut(s) 253
BsiSI CCGG 3 cut(s) 158, 281, 293
BslI CCNNNNNNNGG 4 cut(s) 37, 412, 413, 457
BsmI GAATGC 1 cut(s) 346
BsnI GGCC 2 cut(s) 41, 417
BsoBI CYCGRG 1 cut(s) 253
BspACI CCGC 9 cut(s) 13, 31, 36, 38, 42, 45, 91, 176, 245
BspANI GGCC 2 cut(s) 41, 417
BspCNI CTCAG 1 cut(s) 78
BspFNI CGCG 1 cut(s) 38
BspLI GGNNCC 1 cut(s) 416
BsrBI CCGCTC 1 cut(s) 33
BsrDI GCAATG 1 cut(s) 334
BsrI ACTGG 1 cut(s) 451
BssECI CCNNGG 2 cut(s) 36, 227
BssSI CACGAG 1 cut(s) 5
Bst2BI CACGAG 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 229
Bst4CI ACNGT 1 cut(s) 355
BstDEI CTNAG 1 cut(s) 65
BstDSI CCRYGG 1 cut(s) 36
BstEII GGTNACC 1 cut(s) 109
BstF5I GGATG 1 cut(s) 388
BstFNI CGCG 1 cut(s) 38
BstMCI CGRYCG 2 cut(s) 31, 42
BstMWI GCNNNNNNNGC 2 cut(s) 44, 384
BstNI CCWGG 1 cut(s) 229
BstNSI RCATGY 1 cut(s) 272
BstPI GGTNACC 1 cut(s) 109
BstSCI CCNGG 1 cut(s) 227
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 4 cut(s) 245, 247, 445, 448
BstZI CGGCCG 1 cut(s) 39
Bsu36I CCTNAGG 1 cut(s) 65
BsuRI GGCC 2 cut(s) 41, 417
BtgI CCRYGG 1 cut(s) 36
BtsCI GGATG 1 cut(s) 388
CaiI CAGNNNCTG 1 cut(s) 370
CciNI GCGGCCGC 1 cut(s) 39
Cfr13I GGNCC 2 cut(s) 304, 415
Cfr42I CCGCGG 1 cut(s) 39
Csp6I GTAC 5 cut(s) 10, 83, 130, 224, 314
CviAII CATG 3 cut(s) 199, 269, 379
CviJI RGCY 5 cut(s) 41, 70, 258, 387, 417
CviKI_1 RGCY 5 cut(s) 41, 70, 258, 387, 417
CviQI GTAC 5 cut(s) 10, 83, 130, 224, 314
DdeI CTNAG 1 cut(s) 65
EaeI YGGCCR 1 cut(s) 39
EagI CGGCCG 1 cut(s) 39
EciI GGCGGA 1 cut(s) 260
EclXI CGGCCG 1 cut(s) 39
Eco47I GGWCC 1 cut(s) 304
Eco52I CGGCCG 1 cut(s) 39
Eco81I CCTNAGG 1 cut(s) 65
Eco88I CYCGRG 1 cut(s) 253
Eco91I GGTNACC 1 cut(s) 109
EcoO65I GGTNACC 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 227
FaeI CATG 3 cut(s) 202, 272, 382
FatI CATG 3 cut(s) 198, 268, 378
FblI GTMKAC 1 cut(s) 27
Fnu4HI GCNGC 9 cut(s) 39, 42, 45, 91, 176, 236, 259, 434, 437
FokI GGATG 1 cut(s) 395
Fsp4HI GCNGC 9 cut(s) 39, 42, 45, 91, 176, 236, 259, 434, 437
GluI GCNGC 9 cut(s) 39, 42, 45, 91, 176, 236, 259, 434, 437
HaeIII GGCC 2 cut(s) 41, 417
HapII CCGG 3 cut(s) 158, 281, 293
Hin1II CATG 3 cut(s) 202, 272, 382
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
HinfI GANTC 1 cut(s) 218
HpaII CCGG 3 cut(s) 158, 281, 293
HphI GGTGA 1 cut(s) 103
Hpy166II GTNNAC 2 cut(s) 28, 314
Hpy188I TCNGA 2 cut(s) 265, 394
Hpy188III TCNNGA 1 cut(s) 370
Hpy8I GTNNAC 2 cut(s) 28, 314
HpyAV CCTTC 1 cut(s) 100
HpyCH4III ACNGT 1 cut(s) 355
HpyCH4V TGCA 4 cut(s) 4, 235, 378, 457
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 384
HpyF3I CTNAG 1 cut(s) 65
Hsp92II CATG 3 cut(s) 202, 272, 382
KspI CCGCGG 1 cut(s) 39
LmnI GCTCC 4 cut(s) 38, 265, 324, 430
Lsp1109I GCAGC 4 cut(s) 245, 247, 445, 448
MaeIII GTNAC 2 cut(s) 109, 286
MbiI CCGCTC 1 cut(s) 33
MluCI AATT 2 cut(s) 373, 485
MnlI CCTC 4 cut(s) 26, 74, 277, 295
MseI TTAA 2 cut(s) 348, 490
MspA1I CMGCKG 1 cut(s) 38
MspI CCGG 3 cut(s) 158, 281, 293
MspR9I CCNGG 1 cut(s) 229
Mva1269I GAATGC 1 cut(s) 346
MvaI CCWGG 1 cut(s) 229
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 2 cut(s) 44, 384
NlaIII CATG 3 cut(s) 202, 272, 382
NlaIV GGNNCC 1 cut(s) 416
NmuCI GTSAC 1 cut(s) 109
NotI GCGGCCGC 1 cut(s) 39
NspI RCATGY 1 cut(s) 272
PaeR7I CTCGAG 1 cut(s) 253
PcsI WCGNNNNNNNCGW 1 cut(s) 24
PctI GAATGC 1 cut(s) 346
PfeI GAWTC 1 cut(s) 218
PkrI GCNGC 9 cut(s) 40, 43, 46, 92, 177, 237, 260, 435, 438
Psp6I CCWGG 1 cut(s) 227
PspEI GGTNACC 1 cut(s) 109
PspGI CCWGG 1 cut(s) 227
PspN4I GGNNCC 1 cut(s) 416
PspPI GGNCC 2 cut(s) 304, 415
PspXI VCTCGAGB 1 cut(s) 253
PstNI CAGNNNCTG 1 cut(s) 370
RsaI GTAC 5 cut(s) 11, 84, 131, 225, 315
RsaNI GTAC 5 cut(s) 10, 83, 130, 224, 314
SacII CCGCGG 1 cut(s) 39
SalI GTCGAC 1 cut(s) 26
SaqAI TTAA 2 cut(s) 348, 490
SatI GCNGC 9 cut(s) 39, 42, 45, 91, 176, 236, 259, 434, 437
Sau96I GGNCC 2 cut(s) 304, 415
ScrFI CCNGG 1 cut(s) 229
SetI ASST 7 cut(s) 66, 111, 233, 260, 288, 306, 467
Sfr274I CTCGAG 1 cut(s) 253
Sfr303I CCGCGG 1 cut(s) 39
SgrBI CCGCGG 1 cut(s) 39
SinI GGWCC 1 cut(s) 304
SlaI CTCGAG 1 cut(s) 253
SmlI CTYRAG 1 cut(s) 253
SmoI CTYRAG 1 cut(s) 253
Sse9I AATT 2 cut(s) 373, 485
SsiI CCGC 9 cut(s) 13, 31, 36, 38, 42, 45, 91, 176, 245
SspI AATATT 1 cut(s) 141
StyD4I CCNGG 1 cut(s) 227
TaaI ACNGT 1 cut(s) 355
TaqI TCGA 3 cut(s) 27, 212, 254
TasI AATT 2 cut(s) 373, 485
TatI WGTACW 1 cut(s) 313
TauI GCSGC 5 cut(s) 41, 44, 47, 93, 178
TfiI GAWTC 1 cut(s) 218
Tru1I TTAA 2 cut(s) 348, 490
Tru9I TTAA 2 cut(s) 348, 490
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 4 cut(s) 235, 258, 433, 436
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 3 cut(s) 345, 416, 437
VpaK11BI GGWCC 1 cut(s) 304
XceI RCATGY 1 cut(s) 272
XhoI CTCGAG 1 cut(s) 253
XmiI GTMKAC 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.