Rw2G023930
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0011813
Physical Location & Seq
Forward (+)
35160200 .. 35161820
1621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G023930.1

Sequence Viewer

Length: 900 bp
ATGAAGGCGGAGTTGGATTTACCGGCGGGGTTCAGGTTTCACCCGACCGACGAGGAGTTGGTGAACCACTACTTGATTAAGAAATGTGCTTCCCAGAATATTTCGGTTCCCATCATCAAAGAGATTGATCTTTACAAGTTCGATCCGTGGCAGTTACCTGAAATGGCGCTTTATGGCGAGAAAGAATGGTATTTCTTTTCCCCAAGGGACAGAAAATATCCGAACGGTTCAAGGCCGAACCGGGCGGCAGGAACCGGGTACTGGAAGGCGACCGGAGCAGACAAGCACATTGGAAAGCCAAAAGCACTTGGGATCAAAAAGGCTCTTGTTTTCTATGCCGGGAAAGCCCCTAAAGGAGTCAAGACCAATTGGATCATGCATGAGTATCGACTTGCAAATGTTGATAGGTCTGCTTCCAAGAAAAACCACAACTTGAGGCTTGATGATTGGGTGCTATGCCGAATTTACAACAAGAAGGGTAGCATTGAGAAGTATAATACTGCTACCGTGGACCGGAATAAAGTGGCAACTTACTCGGAAATAATGGACCATGAGCAGAAGCCAGTATTGAAAAACATACATACCAGTGTCACAGCACACAGATATGTTGTCCGGAATTATTCAGCACCGAGATTGCAGCACACAACGGACTGTTCTAGCAGCTCGGATCATGTATTCTCGCCGGAGGTCCAGAGCGAGTTCCAGTGGAGTAGTCCTGAATTCAGTGAATTGGACAATTCGATGAACTTGAACTTCCTTGATAACAATGACCAGTTCAATTACATGGATGGCTTCTCACTAGCAGATATTAGTGACCCTTTTGGCAATCAAGCTCAAGCTCAGCCTCAGTATCAAATGGACCAGCAGGACCTGTTCATGTACCTGCAAAATCAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

299

Amino Acids

34.61

Weight (kDa)

7.72

Isoelectric Point (pI)

42.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 8 - 131 2.8e-48 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011813)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08790 AT5G63790 AT5G63790
fragaria_vesca FvH4_1g25150
malus_domestica MD15G1136600.v1.1
prunus_persica Prupe.4G279600_v2.0.a1
pyrus_communis pycom15g12330 pycom15g12350 pycom520g00050
rosa_chinensis RchiOBHm_Chr2g0122871
rosa_laevigata RLG00000018719
rosa_multiflora Rmu_sc0000859.1_g000009
rosa_roxburghii Rroxscaffold_2G00121100
rosa_rugosa Rorug02G0242700
rosa_samantha Rh2AG301800 Rh2BG309200 Rh2CG287900 Rh2DG325900
rosa_wichuraiana Rw2G023930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 891
AccIII TCCGGA 1 cut(s) 612
AciI CCGC 3 cut(s) 8, 26, 245
AclWI GGATC 4 cut(s) 137, 320, 380, 675
AcsI RAATTY 3 cut(s) 462, 719, 894
AfaI GTAC 2 cut(s) 260, 881
AfiI CCNNNNNNNGG 2 cut(s) 261, 513
AgsI TTSAA 4 cut(s) 231, 571, 751, 778
AjuI GAANNNNNNNTTGG 1 cut(s) 28
AluBI AGCT 3 cut(s) 663, 833, 839
AluI AGCT 3 cut(s) 663, 833, 839
AlwI GGATC 4 cut(s) 137, 320, 380, 675
AlwNI CAGNNNCTG 1 cut(s) 871
Aor13HI TCCGGA 1 cut(s) 612
AoxI GGCC 1 cut(s) 233
ApeKI GCWGC 2 cut(s) 637, 660
ApoI RAATTY 3 cut(s) 462, 719, 894
AspLEI GCGC 1 cut(s) 169
AspS9I GGNCC 5 cut(s) 511, 547, 688, 859, 868
AsuC2I CCSGG 3 cut(s) 242, 256, 340
AsuHPI GGTGA 2 cut(s) 32, 73
AvaII GGWCC 5 cut(s) 511, 547, 688, 859, 868
BbvI GCAGC 2 cut(s) 649, 672
BccI CCATC 2 cut(s) 119, 782
BcgI CGANNNNNNTGC 4 cut(s) 368, 402, 516, 550
BcnI CCSGG 3 cut(s) 242, 256, 340
BfaI CTAG 2 cut(s) 657, 800
BfoI RGCGCY 1 cut(s) 170
BfuAI ACCTGC 1 cut(s) 891
BisI GCNGC 3 cut(s) 246, 638, 661
BlpI GCTNAGC 1 cut(s) 840
BlsI GCNGC 3 cut(s) 247, 639, 662
Bme1390I CCNGG 3 cut(s) 242, 256, 340
Bme18I GGWCC 5 cut(s) 511, 547, 688, 859, 868
BmgT120I GGNCC 5 cut(s) 511, 547, 688, 859, 868
BmiI GGNNCC 2 cut(s) 108, 253
BmrFI CCNGG 3 cut(s) 242, 256, 340
Bpu1102I GCTNAGC 1 cut(s) 840
BpuEI CTTGAG 2 cut(s) 454, 819
BpuMI CCSGG 3 cut(s) 242, 256, 340
BsaJI CCNNGG 3 cut(s) 146, 203, 507
BsaWI WCCGGW 3 cut(s) 272, 513, 612
Bsc4I CCNNNNNNNGG 2 cut(s) 261, 513
Bse118I RCCGGY 1 cut(s) 22
Bse1I ACTGG 5 cut(s) 266, 563, 585, 703, 772
BseAI TCCGGA 1 cut(s) 612
BseDI CCNNGG 3 cut(s) 146, 203, 507
BseGI GGATG 1 cut(s) 793
BseLI CCNNNNNNNGG 2 cut(s) 261, 513
BseMII CTCAG 2 cut(s) 854, 860
BseNI ACTGG 5 cut(s) 266, 563, 585, 703, 772
BseRI GAGGAG 1 cut(s) 68
BseXI GCAGC 2 cut(s) 649, 672
Bsh1285I CGRYCG 2 cut(s) 48, 273
BshFI GGCC 1 cut(s) 235
BsiEI CGRYCG 2 cut(s) 48, 273
BsiSI CCGG 8 cut(s) 23, 241, 255, 273, 339, 514, 613, 683
BslFI GGGAC 1 cut(s) 221
BslI CCNNNNNNNGG 2 cut(s) 261, 513
BsmFI GGGAC 1 cut(s) 221
BsnI GGCC 1 cut(s) 235
Bsp13I TCCGGA 1 cut(s) 612
Bsp143I GATC 5 cut(s) 127, 142, 312, 372, 667
Bsp1720I GCTNAGC 1 cut(s) 840
BspACI CCGC 3 cut(s) 8, 26, 245
BspANI GGCC 1 cut(s) 235
BspCNI CTCAG 2 cut(s) 853, 859
BspEI TCCGGA 1 cut(s) 612
BspLI GGNNCC 2 cut(s) 108, 253
BspMI ACCTGC 1 cut(s) 891
BspPI GGATC 4 cut(s) 137, 320, 380, 675
BsrFI RCCGGY 1 cut(s) 22
BsrI ACTGG 5 cut(s) 266, 563, 585, 703, 772
BssAI RCCGGY 1 cut(s) 22
BssECI CCNNGG 3 cut(s) 146, 203, 507
BssMI GATC 5 cut(s) 127, 142, 312, 372, 667
BssT1I CCWWGG 1 cut(s) 203
Bst4CI ACNGT 3 cut(s) 227, 508, 653
BstDEI CTNAG 2 cut(s) 840, 846
BstDSI CCRYGG 2 cut(s) 146, 507
BstF5I GGATG 1 cut(s) 793
BstH2I RGCGCY 1 cut(s) 170
BstHHI GCGC 1 cut(s) 169
BstKTI GATC 5 cut(s) 130, 145, 315, 375, 670
BstMBI GATC 5 cut(s) 127, 142, 312, 372, 667
BstMCI CGRYCG 2 cut(s) 48, 273
BstMWI GCNNNNNNNGC 2 cut(s) 275, 344
BstSCI CCNGG 3 cut(s) 240, 254, 338
BstV1I GCAGC 2 cut(s) 649, 672
BsuRI GGCC 1 cut(s) 235
BtgI CCRYGG 2 cut(s) 146, 507
BtsCI GGATG 1 cut(s) 793
BtsIMutI CAGTG 3 cut(s) 592, 710, 730
BveI ACCTGC 1 cut(s) 891
CaiI CAGNNNCTG 1 cut(s) 871
CfoI GCGC 1 cut(s) 169
Cfr10I RCCGGY 1 cut(s) 22
Cfr13I GGNCC 5 cut(s) 511, 547, 688, 859, 868
Csp6I GTAC 2 cut(s) 259, 880
CviAII CATG 6 cut(s) 376, 380, 551, 671, 784, 877
CviQI GTAC 2 cut(s) 259, 880
DdeI CTNAG 2 cut(s) 840, 846
DpnI GATC 5 cut(s) 129, 144, 314, 374, 669
DpnII GATC 5 cut(s) 127, 142, 312, 372, 667
EciI GGCGGA 1 cut(s) 23
Eco130I CCWWGG 1 cut(s) 203
Eco47I GGWCC 5 cut(s) 511, 547, 688, 859, 868
EcoO109I RGGNCCY 1 cut(s) 868
EcoRI GAATTC 1 cut(s) 719
EcoT14I CCWWGG 1 cut(s) 203
EcoT22I ATGCAT 1 cut(s) 381
ErhI CCWWGG 1 cut(s) 203
FaeI CATG 6 cut(s) 379, 383, 554, 674, 787, 880
FaqI GGGAC 1 cut(s) 221
FatI CATG 6 cut(s) 375, 379, 550, 670, 783, 876
FauI CCCGC 1 cut(s) 19
Fnu4HI GCNGC 3 cut(s) 246, 638, 661
FokI GGATG 1 cut(s) 800
Fsp4HI GCNGC 3 cut(s) 246, 638, 661
FspBI CTAG 2 cut(s) 657, 800
GlaI GCGC 1 cut(s) 168
GluI GCNGC 3 cut(s) 246, 638, 661
HaeII RGCGCY 1 cut(s) 170
HaeIII GGCC 1 cut(s) 235
HapII CCGG 8 cut(s) 23, 241, 255, 273, 339, 514, 613, 683
HhaI GCGC 1 cut(s) 169
Hin1II CATG 6 cut(s) 379, 383, 554, 674, 787, 880
Hin6I GCGC 1 cut(s) 167
HinP1I GCGC 1 cut(s) 167
HinfI GANTC 1 cut(s) 357
HpaII CCGG 8 cut(s) 23, 241, 255, 273, 339, 514, 613, 683
HphI GGTGA 2 cut(s) 32, 73
Hpy166II GTNNAC 2 cut(s) 64, 511
Hpy188I TCNGA 3 cut(s) 222, 538, 667
Hpy188III TCNNGA 4 cut(s) 361, 613, 691, 716
Hpy8I GTNNAC 2 cut(s) 64, 511
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 2 cut(s) 259, 469
HpyCH4III ACNGT 3 cut(s) 227, 508, 653
HpyCH4V TGCA 4 cut(s) 379, 395, 637, 886
HpyF10VI GCNNNNNNNGC 2 cut(s) 275, 344
HpyF3I CTNAG 2 cut(s) 840, 846
Hsp92II CATG 6 cut(s) 379, 383, 554, 674, 787, 880
HspAI GCGC 1 cut(s) 167
Kpn2I TCCGGA 1 cut(s) 612
Kzo9I GATC 5 cut(s) 127, 142, 312, 372, 667
LmnI GCTCC 1 cut(s) 275
Lsp1109I GCAGC 2 cut(s) 649, 672
MaeI CTAG 2 cut(s) 657, 800
MaeIII GTNAC 3 cut(s) 153, 589, 812
MalI GATC 5 cut(s) 129, 144, 314, 374, 669
MboI GATC 5 cut(s) 127, 142, 312, 372, 667
MfeI CAATTG 1 cut(s) 367
MluCI AATT 8 cut(s) 367, 462, 616, 719, 728, 736, 778, 894
MlyI GAGTC 1 cut(s) 366
MnlI CCTC 4 cut(s) 46, 429, 679, 855
Mph1103I ATGCAT 1 cut(s) 381
MroI TCCGGA 1 cut(s) 612
MseI TTAA 2 cut(s) 78, 898
MslI CAYNNNNRTG 2 cut(s) 585, 603
MspI CCGG 8 cut(s) 23, 241, 255, 273, 339, 514, 613, 683
MspR9I CCNGG 3 cut(s) 242, 256, 340
MunI CAATTG 1 cut(s) 367
MwoI GCNNNNNNNGC 2 cut(s) 275, 344
NciI CCSGG 3 cut(s) 242, 256, 340
NdeII GATC 5 cut(s) 127, 142, 312, 372, 667
NlaIII CATG 6 cut(s) 379, 383, 554, 674, 787, 880
NlaIV GGNNCC 2 cut(s) 108, 253
NmuCI GTSAC 2 cut(s) 589, 812
NsiI ATGCAT 1 cut(s) 381
PkrI GCNGC 3 cut(s) 247, 639, 662
PleI GAGTC 1 cut(s) 365
PpsI GAGTC 1 cut(s) 365
PpuMI RGGWCCY 1 cut(s) 868
Psp5II RGGWCCY 1 cut(s) 868
PspN4I GGNNCC 2 cut(s) 108, 253
PspPI GGNCC 5 cut(s) 511, 547, 688, 859, 868
PspPPI RGGWCCY 1 cut(s) 868
PstNI CAGNNNCTG 1 cut(s) 871
RsaI GTAC 2 cut(s) 260, 881
RsaNI GTAC 2 cut(s) 259, 880
RseI CAYNNNNRTG 2 cut(s) 585, 603
SaqAI TTAA 2 cut(s) 78, 898
SatI GCNGC 3 cut(s) 246, 638, 661
Sau3AI GATC 5 cut(s) 127, 142, 312, 372, 667
Sau96I GGNCC 5 cut(s) 511, 547, 688, 859, 868
SchI GAGTC 1 cut(s) 366
ScrFI CCNGG 3 cut(s) 242, 256, 340
SetI ASST 9 cut(s) 38, 160, 410, 665, 690, 835, 841, 873, 885
SinI GGWCC 5 cut(s) 511, 547, 688, 859, 868
SmiMI CAYNNNNRTG 2 cut(s) 585, 603
SmlI CTYRAG 2 cut(s) 433, 834
SmoI CTYRAG 2 cut(s) 433, 834
Sse9I AATT 8 cut(s) 367, 462, 616, 719, 728, 736, 778, 894
SsiI CCGC 3 cut(s) 8, 26, 245
SspI AATATT 1 cut(s) 100
SspMI CTAG 2 cut(s) 657, 800
StyD4I CCNGG 3 cut(s) 240, 254, 338
StyI CCWWGG 1 cut(s) 203
TaaI ACNGT 3 cut(s) 227, 508, 653
TaqI TCGA 3 cut(s) 141, 388, 740
TaqII GACCGA 1 cut(s) 62
TasI AATT 8 cut(s) 367, 462, 616, 719, 728, 736, 778, 894
TauI GCSGC 1 cut(s) 248
Tru1I TTAA 2 cut(s) 78, 898
Tru9I TTAA 2 cut(s) 78, 898
TscAI CASTG 3 cut(s) 592, 710, 730
TseFI GTSAC 2 cut(s) 589, 812
TseI GCWGC 2 cut(s) 637, 660
Tsp45I GTSAC 2 cut(s) 589, 812
TspDTI ATGAA 3 cut(s) 17, 758, 865
TspGWI ACGGA 2 cut(s) 135, 662
TspRI CASTG 3 cut(s) 592, 710, 730
VpaK11BI GGWCC 5 cut(s) 511, 547, 688, 859, 868
XapI RAATTY 3 cut(s) 462, 719, 894
XspI CTAG 2 cut(s) 657, 800
Zsp2I ATGCAT 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.