Rh2BG309200
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0011813
Physical Location & Seq
Forward (+)
36044061 .. 36046275
2215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG309200.1

Sequence Viewer

Length: 552 bp
ATGACACATTACCTTACTGTGAATTTCATGTTCATATTGCAGCTTGATGATTGGGTGCTATGCCGAATTTACAACAAGAAGGGTAGCATTGAGAAGTATAATACTGCTACCATGGACCGGAATAAAGTGGCAACTTACTCGGAAATAATGGACCATGAGCAGAAGCCAGTATTGAAAAACATACAGTTCAATGTAGCACCATCACAAGGTCAACAAACGCCATTAGCTGCAGTACCAGTGTCACAGCACACAGATATGTTGTCCGGAGATTATTCAGCACCGAGATTGCAGCACACAACGGACTGTTCTAGCAGCTCGGATCATGTATTCTCGCCGGAGGTTCAGAGCGAGTTCCAGTGGAGTAGTCCTGAATTCAATGAATTGGACAAGTCGATGAACTTGAACTTCCTTGATAACAATGACGAGTTCAATTACATGGATGGCTTCTCACTAGCAGATATTAGTGACCCTTTTGGCAATCAAGCTCAAGCTCAGCCTCAGTATCAAATGGACCAGCAGGACCTGTTCATGTACCTGCAAAATCAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

183

Amino Acids

21.12

Weight (kDa)

4.41

Isoelectric Point (pI)

53.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011813)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08790 AT5G63790 AT5G63790
fragaria_vesca FvH4_1g25150
malus_domestica MD15G1136600.v1.1
prunus_persica Prupe.4G279600_v2.0.a1
pyrus_communis pycom15g12330 pycom15g12350 pycom520g00050
rosa_chinensis RchiOBHm_Chr2g0122871
rosa_laevigata RLG00000018719
rosa_multiflora Rmu_sc0000859.1_g000009
rosa_roxburghii Rroxscaffold_2G00121100
rosa_rugosa Rorug02G0242700
rosa_samantha Rh2AG301800 Rh2BG309200 Rh2CG287900 Rh2DG325900
rosa_wichuraiana Rw2G023930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 543
AccIII TCCGGA 1 cut(s) 263
AclWI GGATC 1 cut(s) 327
AcsI RAATTY 4 cut(s) 22, 66, 371, 546
AfaI GTAC 2 cut(s) 234, 533
AfiI CCNNNNNNNGG 2 cut(s) 117, 206
AgsI TTSAA 5 cut(s) 175, 190, 376, 403, 430
AluBI AGCT 5 cut(s) 43, 227, 315, 485, 491
AluI AGCT 5 cut(s) 43, 227, 315, 485, 491
AlwI GGATC 1 cut(s) 327
AlwNI CAGNNNCTG 1 cut(s) 523
Aor13HI TCCGGA 1 cut(s) 263
ApeKI GCWGC 4 cut(s) 40, 227, 289, 312
ApoI RAATTY 4 cut(s) 22, 66, 371, 546
AspS9I GGNCC 4 cut(s) 115, 151, 511, 520
AvaII GGWCC 4 cut(s) 115, 151, 511, 520
BbvI GCAGC 4 cut(s) 52, 214, 301, 324
BccI CCATC 2 cut(s) 208, 434
BcgI CGANNNNNNTGC 2 cut(s) 120, 154
BfaI CTAG 2 cut(s) 309, 452
BfmI CTRYAG 1 cut(s) 228
BfuAI ACCTGC 1 cut(s) 543
BisI GCNGC 4 cut(s) 41, 228, 290, 313
BlpI GCTNAGC 1 cut(s) 492
BlsI GCNGC 4 cut(s) 42, 229, 291, 314
Bme18I GGWCC 4 cut(s) 115, 151, 511, 520
BmgT120I GGNCC 4 cut(s) 115, 151, 511, 520
Bpu1102I GCTNAGC 1 cut(s) 492
BpuEI CTTGAG 1 cut(s) 471
BsaJI CCNNGG 1 cut(s) 111
BsaWI WCCGGW 2 cut(s) 117, 263
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 206
Bse1I ACTGG 3 cut(s) 167, 236, 355
BseAI TCCGGA 1 cut(s) 263
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 1 cut(s) 445
BseLI CCNNNNNNNGG 2 cut(s) 117, 206
BseMII CTCAG 2 cut(s) 506, 512
BseNI ACTGG 3 cut(s) 167, 236, 355
BseXI GCAGC 4 cut(s) 52, 214, 301, 324
BsiSI CCGG 3 cut(s) 118, 264, 335
BslI CCNNNNNNNGG 2 cut(s) 117, 206
Bsp13I TCCGGA 1 cut(s) 263
Bsp143I GATC 1 cut(s) 319
Bsp1720I GCTNAGC 1 cut(s) 492
Bsp19I CCATGG 1 cut(s) 111
BspCNI CTCAG 2 cut(s) 505, 511
BspEI TCCGGA 1 cut(s) 263
BspMAI CTGCAG 1 cut(s) 232
BspMI ACCTGC 1 cut(s) 543
BspPI GGATC 1 cut(s) 327
BsrI ACTGG 3 cut(s) 167, 236, 355
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 1 cut(s) 319
BssT1I CCWWGG 1 cut(s) 111
Bst4CI ACNGT 3 cut(s) 19, 186, 305
BstDEI CTNAG 2 cut(s) 492, 498
BstDSI CCRYGG 1 cut(s) 111
BstF5I GGATG 1 cut(s) 445
BstKTI GATC 1 cut(s) 322
BstMBI GATC 1 cut(s) 319
BstSFI CTRYAG 1 cut(s) 228
BstV1I GCAGC 4 cut(s) 52, 214, 301, 324
BtgI CCRYGG 1 cut(s) 111
BtsCI GGATG 1 cut(s) 445
BtsIMutI CAGTG 2 cut(s) 243, 362
BveI ACCTGC 1 cut(s) 543
CaiI CAGNNNCTG 1 cut(s) 523
Cfr13I GGNCC 4 cut(s) 115, 151, 511, 520
Csp6I GTAC 2 cut(s) 233, 532
CviAII CATG 6 cut(s) 28, 112, 155, 323, 436, 529
CviJI RGCY 8 cut(s) 43, 166, 227, 315, 444, 485, 491, 496
CviKI_1 RGCY 8 cut(s) 43, 166, 227, 315, 444, 485, 491, 496
CviQI GTAC 2 cut(s) 233, 532
DdeI CTNAG 2 cut(s) 492, 498
DpnI GATC 1 cut(s) 321
DpnII GATC 1 cut(s) 319
Eco130I CCWWGG 1 cut(s) 111
Eco47I GGWCC 4 cut(s) 115, 151, 511, 520
EcoO109I RGGNCCY 1 cut(s) 520
EcoRI GAATTC 1 cut(s) 371
EcoT14I CCWWGG 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 6 cut(s) 31, 115, 158, 326, 439, 532
FatI CATG 6 cut(s) 27, 111, 154, 322, 435, 528
Fnu4HI GCNGC 4 cut(s) 41, 228, 290, 313
FokI GGATG 1 cut(s) 452
Fsp4HI GCNGC 4 cut(s) 41, 228, 290, 313
FspBI CTAG 2 cut(s) 309, 452
GluI GCNGC 4 cut(s) 41, 228, 290, 313
HapII CCGG 3 cut(s) 118, 264, 335
Hin1II CATG 6 cut(s) 31, 115, 158, 326, 439, 532
HincII GTYRAC 1 cut(s) 212
HindII GTYRAC 1 cut(s) 212
HpaII CCGG 3 cut(s) 118, 264, 335
Hpy166II GTNNAC 1 cut(s) 212
Hpy188I TCNGA 3 cut(s) 142, 319, 345
Hpy188III TCNNGA 2 cut(s) 264, 368
Hpy8I GTNNAC 1 cut(s) 212
HpyAV CCTTC 1 cut(s) 73
HpyCH4III ACNGT 3 cut(s) 19, 186, 305
HpyCH4V TGCA 4 cut(s) 40, 230, 289, 538
HpyF3I CTNAG 2 cut(s) 492, 498
Hsp92II CATG 6 cut(s) 31, 115, 158, 326, 439, 532
Kpn2I TCCGGA 1 cut(s) 263
Kzo9I GATC 1 cut(s) 319
Lsp1109I GCAGC 4 cut(s) 52, 214, 301, 324
MaeI CTAG 2 cut(s) 309, 452
MaeIII GTNAC 2 cut(s) 240, 464
MalI GATC 1 cut(s) 321
MboI GATC 1 cut(s) 319
MluCI AATT 6 cut(s) 22, 66, 371, 380, 430, 546
MnlI CCTC 2 cut(s) 331, 507
MroI TCCGGA 1 cut(s) 263
MseI TTAA 1 cut(s) 550
MslI CAYNNNNRTG 1 cut(s) 254
MspI CCGG 3 cut(s) 118, 264, 335
NcoI CCATGG 1 cut(s) 111
NdeII GATC 1 cut(s) 319
NlaIII CATG 6 cut(s) 31, 115, 158, 326, 439, 532
NmuCI GTSAC 2 cut(s) 240, 464
PkrI GCNGC 4 cut(s) 42, 229, 291, 314
PpuMI RGGWCCY 1 cut(s) 520
Psp5II RGGWCCY 1 cut(s) 520
PspPI GGNCC 4 cut(s) 115, 151, 511, 520
PspPPI RGGWCCY 1 cut(s) 520
PstI CTGCAG 1 cut(s) 232
PstNI CAGNNNCTG 1 cut(s) 523
RsaI GTAC 2 cut(s) 234, 533
RsaNI GTAC 2 cut(s) 233, 532
RseI CAYNNNNRTG 1 cut(s) 254
SaqAI TTAA 1 cut(s) 550
SatI GCNGC 4 cut(s) 41, 228, 290, 313
Sau3AI GATC 1 cut(s) 319
Sau96I GGNCC 4 cut(s) 115, 151, 511, 520
SfcI CTRYAG 1 cut(s) 228
SinI GGWCC 4 cut(s) 115, 151, 511, 520
SmiMI CAYNNNNRTG 1 cut(s) 254
SmlI CTYRAG 1 cut(s) 486
SmoI CTYRAG 1 cut(s) 486
Sse9I AATT 6 cut(s) 22, 66, 371, 380, 430, 546
SspMI CTAG 2 cut(s) 309, 452
StyI CCWWGG 1 cut(s) 111
TaaI ACNGT 3 cut(s) 19, 186, 305
TaqI TCGA 1 cut(s) 392
TasI AATT 6 cut(s) 22, 66, 371, 380, 430, 546
Tru1I TTAA 1 cut(s) 550
Tru9I TTAA 1 cut(s) 550
TscAI CASTG 2 cut(s) 243, 362
TseFI GTSAC 2 cut(s) 240, 464
TseI GCWGC 4 cut(s) 40, 227, 289, 312
Tsp45I GTSAC 2 cut(s) 240, 464
TspDTI ATGAA 5 cut(s) 16, 22, 393, 410, 517
TspGWI ACGGA 1 cut(s) 314
TspRI CASTG 2 cut(s) 243, 362
VpaK11BI GGWCC 4 cut(s) 115, 151, 511, 520
XapI RAATTY 4 cut(s) 22, 66, 371, 546
XspI CTAG 2 cut(s) 309, 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.