Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011813

Physical Location & Seq

Genomic Coordinates Reverse (-)

25526509 .. 25528281

Gene Structure 1773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G63790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGACTTTGCTCTCTTCTCCTCGATTTCAATCTTTGAGATAAACCACAAAGATCCTCCGATTCGAAGGTTTATAAAAACTCAAAATCGAATCTTATCCACAAGAAAACAACAAGGTACTTTTCCAAAAATGAAGGCGGAGTTGAATTTGCCGGCGGGATTCCGATTTCATCCGACGGACGAAGAGCTTGTCAAGTTCTATCTTTGCCGGAGATGTGCGTCAGAACCGATTAACGTTCCGGTTATCGCAGAGATTGACTTGTACAAATTCAATCCATGGGAGCTTCCAGAAATGGCGTTGTACGGTGAGAAAGAATGGTACTTCTTCTCGCATAGAGACCGGAAATACCCAAACGGGTCGAGACCAAACCGGGCAGCTGGAACCGGTTATTGGAAAGCGACTGGAGCTGATAAACCGATCGGAAAACCGAAGACGTTAGGGATTAAGAAAGCACTCGTCTTCTACGCAGGAAAAGCTCCGAAAGGGATTAAAACGAATTGGATTATGCACGAGTATCGTCTCGCTAATGTCGATCGATCTGCTTCTACCAACAAGAAGAACAACTTAAGACTTGATGATTGGGTTTTGTGTCGGATATACAATAAGAAAGGAACAATGGAGAAGTATTTACCGGCGGCGGCTGAGAAACCGACGGAAAAGATGAGTACGTCGGACTCAAGATGCTCAAGTCACGTGATTTCACCGGACGTCACGTGTTCTGATAACTGGGAGGTTGAGAGTGAGCCCAAATGGATTAATCTGGAAGACGCGTTAGAGGCATTTAATGATGACACGTCCATGTTTAGTTCCATTGGTTTGTTGCAAAATGACGCCTTTGTTCCTCAGTTTCAGTACCAGTCCTCCGATTTCGTCGATTCGTTTCAGGACCCGTTCGAGCAGAAACCGTTCTTGAATTGGAATTTTGCTCCTCAAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001666 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009611 GO:0009628 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0036293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070482 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

312

Amino Acids

36.0

Weight (kDa)

8.63

Isoelectric Point (pI)

42.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	51 - 174	1.6e-47	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08790 AT5G63790 AT5G63790
fragaria_vesca	FvH4_1g25150
malus_domestica	MD15G1136600.v1.1
prunus_persica	Prupe.4G279600_v2.0.a1
pyrus_communis	pycom15g12330 pycom15g12350 pycom520g00050
rosa_chinensis	RchiOBHm_Chr2g0122871
rosa_laevigata	RLG00000018719
rosa_multiflora	Rmu_sc0000859.1_g000009
rosa_roxburghii	Rroxscaffold_2G00121100
rosa_rugosa	Rorug02G0242700
rosa_samantha	Rh2AG301800 Rh2BG309200 Rh2CG287900 Rh2DG325900
rosa_wichuraiana	Rw2G023930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	74
AatII	GACGTC	1 cut(s)	711
AccII	CGCG	1 cut(s)	770
AciI	CCGC	4 cut(s)	137, 155, 635, 638
AclI	AACGTT	1 cut(s)	234
AclWI	GGATC	1 cut(s)	47
AcsI	RAATTY	3 cut(s)	145, 266, 919
AcvI	CACGTG	2 cut(s)	694, 714
AcyI	GRCGYC	2 cut(s)	708, 831
AfaI	GTAC	6 cut(s)	118, 263, 302, 320, 667, 854
AfiI	CCNNNNNNNGG	1 cut(s)	390
AflII	CTTAAG	1 cut(s)	565
AflIII	ACRYGT	3 cut(s)	713, 768, 792
AgeI	ACCGGT	1 cut(s)	383
AgsI	TTSAA	4 cut(s)	30, 145, 271, 913
AjiI	CACGTC	1 cut(s)	795
AjuI	GAANNNNNNNTTGG	2 cut(s)	373, 405
AluBI	AGCT	5 cut(s)	187, 283, 377, 407, 476
AluI	AGCT	5 cut(s)	187, 283, 377, 407, 476
Alw26I	GTCTC	3 cut(s)	330, 355, 524
AlwI	GGATC	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	374
ApoI	RAATTY	3 cut(s)	145, 266, 919
ArsI	GACNNNNNNTTYG	2 cut(s)	174, 206
AseI	ATTAAT	1 cut(s)	756
AsiGI	ACCGGT	1 cut(s)	383
Asp700I	GAANNNNTTC	1 cut(s)	905
AspS9I	GGNCC	1 cut(s)	886
AsuC2I	CCSGG	1 cut(s)	371
AsuHPI	GGTGA	2 cut(s)	317, 693
AsuII	TTCGAA	1 cut(s)	64
AvaII	GGWCC	1 cut(s)	886
BanII	GRGCYC	1 cut(s)	747
BauI	CACGAG	1 cut(s)	509
BbrPI	CACGTG	2 cut(s)	694, 714
BbsI	GAAGAC	3 cut(s)	437, 451, 771
BbvI	GCAGC	1 cut(s)	386
BcgI	CGANNNNNNTGC	4 cut(s)	497, 521, 531, 555
BcnI	CCSGG	1 cut(s)	371
BcoDI	GTCTC	3 cut(s)	330, 355, 524
BfrI	CTTAAG	1 cut(s)	565
BisI	GCNGC	3 cut(s)	375, 636, 639
BlsI	GCNGC	3 cut(s)	376, 637, 640
Bme1390I	CCNGG	1 cut(s)	371
Bme18I	GGWCC	1 cut(s)	886
BmgBI	CACGTC	1 cut(s)	795
BmgT120I	GGNCC	1 cut(s)	886
BmiI	GGNNCC	2 cut(s)	382, 888
BmrFI	CCNGG	1 cut(s)	371
BmrI	ACTGGG	1 cut(s)	736
BmsI	GCATC	1 cut(s)	671
BmuI	ACTGGG	1 cut(s)	736
BpiI	GAAGAC	3 cut(s)	437, 451, 771
BpmI	CTGGAG	1 cut(s)	423
Bpu14I	TTCGAA	1 cut(s)	64
BpuEI	CTTGAG	3 cut(s)	661, 670, 915
BpuMI	CCSGG	1 cut(s)	371
Bsa29I	ATCGAT	1 cut(s)	535
BsaAI	YACGTR	2 cut(s)	694, 714
BsaBI	GATNNNNATC	1 cut(s)	29
BsaHI	GRCGYC	2 cut(s)	708, 831
BsaI	GGTCTC	2 cut(s)	330, 355
BsaJI	CCNNGG	1 cut(s)	275
BsaWI	WCCGGW	4 cut(s)	238, 339, 383, 703
BsaXI	ACNNNNNCTCC	2 cut(s)	845, 875
Bsc4I	CCNNNNNNNGG	1 cut(s)	390
Bse118I	RCCGGY	3 cut(s)	151, 383, 631
Bse1I	ACTGG	3 cut(s)	406, 731, 856
Bse8I	GATNNNNATC	1 cut(s)	29
BseCI	ATCGAT	1 cut(s)	535
BseDI	CCNNGG	1 cut(s)	275
BseGI	GGATG	1 cut(s)	169
BseJI	GATNNNNATC	1 cut(s)	29
BseLI	CCNNNNNNNGG	1 cut(s)	390
BseMII	CTCAG	2 cut(s)	633, 857
BseNI	ACTGG	3 cut(s)	406, 731, 856
BseRI	GAGGAG	2 cut(s)	10, 918
BseXI	GCAGC	1 cut(s)	386
Bsh1236I	CGCG	1 cut(s)	770
Bsh1285I	CGRYCG	2 cut(s)	420, 535
BshTI	ACCGGT	1 cut(s)	383
BshVI	ATCGAT	1 cut(s)	535
BsiEI	CGRYCG	2 cut(s)	420, 535
BsiSI	CCGG	8 cut(s)	152, 208, 239, 340, 370, 384, 632, 704
BslI	CCNNNNNNNGG	1 cut(s)	390
BsmAI	GTCTC	3 cut(s)	330, 355, 524
BsmBI	CGTCTC	1 cut(s)	524
Bso31I	GGTCTC	2 cut(s)	330, 355
Bsp119I	TTCGAA	1 cut(s)	64
Bsp1286I	GDGCHC	1 cut(s)	747
Bsp1407I	TGTACA	1 cut(s)	261
Bsp143I	GATC	4 cut(s)	52, 417, 532, 536
Bsp19I	CCATGG	1 cut(s)	275
BspACI	CCGC	4 cut(s)	137, 155, 635, 638
BspCNI	CTCAG	2 cut(s)	634, 856
BspDI	ATCGAT	1 cut(s)	535
BspFNI	CGCG	1 cut(s)	770
BspLI	GGNNCC	2 cut(s)	382, 888
BspPI	GGATC	1 cut(s)	47
BspQI	GCTCTTC	1 cut(s)	177
BspT104I	TTCGAA	1 cut(s)	64
BspTI	CTTAAG	1 cut(s)	565
BspTNI	GGTCTC	2 cut(s)	330, 355
BsrFI	RCCGGY	3 cut(s)	151, 383, 631
BsrGI	TGTACA	1 cut(s)	261
BsrI	ACTGG	3 cut(s)	406, 731, 856
BssAI	RCCGGY	3 cut(s)	151, 383, 631
BssECI	CCNNGG	1 cut(s)	275
BssMI	GATC	4 cut(s)	52, 417, 532, 536
BssNI	GRCGYC	2 cut(s)	708, 831
BssSI	CACGAG	1 cut(s)	509
BssT1I	CCWWGG	1 cut(s)	275
Bst2BI	CACGAG	1 cut(s)	509
Bst4CI	ACNGT	2 cut(s)	305, 906
Bst6I	CTCTTC	2 cut(s)	20, 177
BstACI	GRCGYC	2 cut(s)	708, 831
BstAFI	CTTAAG	1 cut(s)	565
BstAUI	TGTACA	1 cut(s)	261
BstBAI	YACGTR	2 cut(s)	694, 714
BstBI	TTCGAA	1 cut(s)	64
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	2 cut(s)	642, 843
BstDSI	CCRYGG	1 cut(s)	275
BstF5I	GGATG	1 cut(s)	169
BstFNI	CGCG	1 cut(s)	770
BstKTI	GATC	4 cut(s)	55, 420, 535, 539
BstMAI	GTCTC	3 cut(s)	330, 355, 524
BstMBI	GATC	4 cut(s)	52, 417, 532, 536
BstMCI	CGRYCG	2 cut(s)	420, 535
BstMWI	GCNNNNNNNGC	3 cut(s)	404, 473, 776
BstSCI	CCNGG	1 cut(s)	369
BstUI	CGCG	1 cut(s)	770
BstV1I	GCAGC	1 cut(s)	386
BstV2I	GAAGAC	3 cut(s)	437, 451, 771
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
Bsu15I	ATCGAT	1 cut(s)	535
BsuTUI	ATCGAT	1 cut(s)	535
BtgI	CCRYGG	1 cut(s)	275
BtrI	CACGTC	1 cut(s)	795
BtsCI	GGATG	1 cut(s)	169
Cac8I	GCNNGC	1 cut(s)	153
Cfr10I	RCCGGY	3 cut(s)	151, 383, 631
Cfr13I	GGNCC	1 cut(s)	886
ClaI	ATCGAT	1 cut(s)	535
CseI	GACGC	3 cut(s)	207, 776, 839
Csp6I	GTAC	6 cut(s)	117, 262, 301, 319, 666, 853
CspAI	ACCGGT	1 cut(s)	383
CviAII	CATG	2 cut(s)	276, 799
CviJI	RGCY	7 cut(s)	187, 283, 377, 407, 476, 641, 745
CviKI_1	RGCY	7 cut(s)	187, 283, 377, 407, 476, 641, 745
CviQI	GTAC	6 cut(s)	117, 262, 301, 319, 666, 853
DdeI	CTNAG	2 cut(s)	642, 843
DpnI	GATC	4 cut(s)	54, 419, 534, 538
DpnII	GATC	4 cut(s)	52, 417, 532, 536
Eam1104I	CTCTTC	2 cut(s)	20, 177
EarI	CTCTTC	2 cut(s)	20, 177
EciI	GGCGGA	1 cut(s)	152
Eco130I	CCWWGG	1 cut(s)	275
Eco24I	GRGCYC	1 cut(s)	747
Eco31I	GGTCTC	2 cut(s)	330, 355
Eco47I	GGWCC	1 cut(s)	886
Eco72I	CACGTG	2 cut(s)	694, 714
EcoO109I	RGGNCCY	1 cut(s)	886
EcoT14I	CCWWGG	1 cut(s)	275
EcoT38I	GRGCYC	1 cut(s)	747
ErhI	CCWWGG	1 cut(s)	275
Esp3I	CGTCTC	1 cut(s)	524
FaeI	CATG	2 cut(s)	279, 802
FaiI	YATR	6 cut(s)	74, 277, 333, 506, 598, 800
FalI	AAGNNNNNCTT	2 cut(s)	548, 580
FatI	CATG	2 cut(s)	275, 798
FauI	CCCGC	1 cut(s)	148
Fnu4HI	GCNGC	3 cut(s)	375, 636, 639
FokI	GGATG	1 cut(s)	156
FriOI	GRGCYC	1 cut(s)	747
Fsp4HI	GCNGC	3 cut(s)	375, 636, 639
GluI	GCNGC	3 cut(s)	375, 636, 639
GsuI	CTGGAG	1 cut(s)	423
HapII	CCGG	8 cut(s)	152, 208, 239, 340, 370, 384, 632, 704
HgaI	GACGC	3 cut(s)	207, 776, 839
Hin1I	GRCGYC	2 cut(s)	708, 831
Hin1II	CATG	2 cut(s)	279, 802
HinfI	GANTC	5 cut(s)	61, 90, 159, 674, 875
HpaII	CCGG	8 cut(s)	152, 208, 239, 340, 370, 384, 632, 704
HphI	GGTGA	2 cut(s)	317, 693
Hpy188III	TCNNGA	6 cut(s)	287, 360, 678, 761, 884, 910
Hpy99I	CGWCG	4 cut(s)	178, 655, 673, 875
HpyAV	CCTTC	2 cut(s)	60, 127
HpyCH4III	ACNGT	2 cut(s)	305, 906
HpyCH4IV	ACGT	7 cut(s)	234, 434, 668, 693, 708, 713, 794
HpyCH4V	TGCA	2 cut(s)	508, 823
HpyF10VI	GCNNNNNNNGC	3 cut(s)	404, 473, 776
HpyF3I	CTNAG	2 cut(s)	642, 843
HpySE526I	ACGT	7 cut(s)	234, 434, 668, 693, 708, 713, 794
Hsp92I	GRCGYC	2 cut(s)	708, 831
Hsp92II	CATG	2 cut(s)	279, 802
KroI	GCCGGC	1 cut(s)	151
KroNI	GCCGGC	1 cut(s)	153
Kzo9I	GATC	4 cut(s)	52, 417, 532, 536
LguI	GCTCTTC	1 cut(s)	177
LmnI	GCTCC	4 cut(s)	280, 404, 481, 931
Lsp1109I	GCAGC	1 cut(s)	386
LweI	GCATC	1 cut(s)	671
MaeII	ACGT	7 cut(s)	234, 434, 668, 693, 708, 713, 794
MaeIII	GTNAC	2 cut(s)	689, 709
MalI	GATC	4 cut(s)	54, 419, 534, 538
MboI	GATC	4 cut(s)	52, 417, 532, 536
MboII	GAAGA	7 cut(s)	7, 194, 316, 442, 451, 568, 776
MflI	RGATCY	1 cut(s)	52
MhlI	GDGCHC	1 cut(s)	747
MluCI	AATT	5 cut(s)	145, 266, 496, 913, 919
MluI	ACGCGT	1 cut(s)	768
MlyI	GAGTC	1 cut(s)	668
MmeI	TCCRAC	3 cut(s)	197, 572, 651
MnlI	CCTC	7 cut(s)	31, 66, 724, 769, 852, 871, 939
MroNI	GCCGGC	1 cut(s)	151
MroXI	GAANNNNTTC	1 cut(s)	905
MseI	TTAA	6 cut(s)	231, 444, 489, 566, 756, 783
MslI	CAYNNNNRTG	1 cut(s)	797
MspA1I	CMGCKG	1 cut(s)	377
MspCI	CTTAAG	1 cut(s)	565
MspI	CCGG	8 cut(s)	152, 208, 239, 340, 370, 384, 632, 704
MspR9I	CCNGG	1 cut(s)	371
MvnI	CGCG	1 cut(s)	770
MwoI	GCNNNNNNNGC	3 cut(s)	404, 473, 776
NaeI	GCCGGC	1 cut(s)	153
NciI	CCSGG	1 cut(s)	371
NcoI	CCATGG	1 cut(s)	275
NdeII	GATC	4 cut(s)	52, 417, 532, 536
NgoMIV	GCCGGC	1 cut(s)	151
NlaIII	CATG	2 cut(s)	279, 802
NlaIV	GGNNCC	2 cut(s)	382, 888
NmuCI	GTSAC	2 cut(s)	689, 709
NspV	TTCGAA	1 cut(s)	64
PciSI	GCTCTTC	1 cut(s)	177
PcsI	WCGNNNNNNNCGW	1 cut(s)	528
PdiI	GCCGGC	1 cut(s)	153
PdmI	GAANNNNTTC	1 cut(s)	905
PfeI	GAWTC	4 cut(s)	61, 90, 159, 875
PinAI	ACCGGT	1 cut(s)	383
PkrI	GCNGC	3 cut(s)	376, 637, 640
Ple19I	CGATCG	2 cut(s)	420, 535
PleI	GAGTC	1 cut(s)	668
PmaCI	CACGTG	2 cut(s)	694, 714
PmlI	CACGTG	2 cut(s)	694, 714
PpsI	GAGTC	1 cut(s)	668
Ppu21I	YACGTR	2 cut(s)	694, 714
PpuMI	RGGWCCY	1 cut(s)	886
PshBI	ATTAAT	1 cut(s)	756
PsiI	TTATAA	1 cut(s)	74
Psp1406I	AACGTT	1 cut(s)	234
Psp5II	RGGWCCY	1 cut(s)	886
PspCI	CACGTG	2 cut(s)	694, 714
PspN4I	GGNNCC	2 cut(s)	382, 888
PspPI	GGNCC	1 cut(s)	886
PspPPI	RGGWCCY	1 cut(s)	886
PsuI	RGATCY	1 cut(s)	52
PvuI	CGATCG	2 cut(s)	420, 535
PvuII	CAGCTG	1 cut(s)	377
RsaI	GTAC	6 cut(s)	118, 263, 302, 320, 667, 854
RsaNI	GTAC	6 cut(s)	117, 262, 301, 319, 666, 853
RseI	CAYNNNNRTG	1 cut(s)	797
SapI	GCTCTTC	1 cut(s)	177
SaqAI	TTAA	6 cut(s)	231, 444, 489, 566, 756, 783
SatI	GCNGC	3 cut(s)	375, 636, 639
Sau3AI	GATC	4 cut(s)	52, 417, 532, 536
Sau96I	GGNCC	1 cut(s)	886
SchI	GAGTC	1 cut(s)	668
ScrFI	CCNGG	1 cut(s)	371
SduI	GDGCHC	1 cut(s)	747
SfaNI	GCATC	1 cut(s)	671
SfuI	TTCGAA	1 cut(s)	64
SinI	GGWCC	1 cut(s)	886
SmiMI	CAYNNNNRTG	1 cut(s)	797
SmlI	CTYRAG	4 cut(s)	565, 676, 685, 930
SmoI	CTYRAG	4 cut(s)	565, 676, 685, 930
Sse9I	AATT	5 cut(s)	145, 266, 496, 913, 919
SsiI	CCGC	4 cut(s)	137, 155, 635, 638
StyD4I	CCNGG	1 cut(s)	369
StyI	CCWWGG	1 cut(s)	275
TaaI	ACNGT	2 cut(s)	305, 906
TaiI	ACGT	7 cut(s)	237, 437, 671, 696, 711, 716, 797
TaqI	TCGA	8 cut(s)	23, 64, 88, 359, 531, 535, 873, 894
TasI	AATT	5 cut(s)	145, 266, 496, 913, 919
TatI	WGTACW	1 cut(s)	261
TauI	GCSGC	2 cut(s)	638, 641
TfiI	GAWTC	4 cut(s)	61, 90, 159, 875
Tru1I	TTAA	6 cut(s)	231, 444, 489, 566, 756, 783
Tru9I	TTAA	6 cut(s)	231, 444, 489, 566, 756, 783
TseFI	GTSAC	2 cut(s)	689, 709
TseI	GCWGC	1 cut(s)	374
Tsp45I	GTSAC	2 cut(s)	689, 709
TspDTI	ATGAA	2 cut(s)	146, 158
TspGWI	ACGGA	2 cut(s)	191, 668
Vha464I	CTTAAG	1 cut(s)	565
VpaK11BI	GGWCC	1 cut(s)	886
VspI	ATTAAT	1 cut(s)	756
XapI	RAATTY	3 cut(s)	145, 266, 919
XmnI	GAANNNNTTC	1 cut(s)	905
ZraI	GACGTC	1 cut(s)	709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.